Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000552.1

Orthogroup ID

OG0005621

Physical Location & Seq

Genomic Coordinates Forward (+)

90410 .. 98299

Gene Structure 7890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000552.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

atggatgagagcactagttttcggttcatcctcaggcgcgcatgggcgggggtgatggtgcagcggcgtcaaggtggagtccttgttctaatggcggtgatggtggctgatagtggtgctgctactagatctgcacagagagagaagcatggctggttctctctttaccatatcttcttcttcttcttcttcttcttcttcttcggcgacttcaatctactccactccgagcttcaagctcaggaggccatcaagaaaagttggggcgacatgggagagaagatgagtgaggatgagattgatgatcctaagcttaaggagtttttgcagactggttgcttcaggagccactacacatttgagtatggaggaggagctggctttggaagagagtttcgagaggctgagatggaggagaaatcggttcaggtcggtctttcgatcccagaaaatatcaagctcgacaccgacccgataaactttgaccagctccggcagcgttttgacctcaggcaagcaagtggccgccgccatcaagagcatcgtcaccatcagaatccacaccgccatcataagccacgccgtcatcccaaaacaccacctgcaaaccgctcgcccgaacctacactagttcgttactcgccatctggtcacttcagcctctccacaaaaccaccgacccggcttccattctgggtggttgaactcttggactttaaagtgacaagtgagagaatctatagctatgaggctatggtcaggattggcttgagcttggtatttgggtgcctcctcttggctcttgtggcagagctttactacttgctatggtggaagaaaagaatcacaaacagagagattgaagatgagaattacagcaaccagccaaaggtaccctttcaatttagttgctttaagaaacccaattgtctgcaaactacaaacaacaacaccacttctgaggataatgtgagaaacccagataccaattctagtgacccagatttggaactgggttccagcaaagattcgttgttgaaggccaattatggtgaagacaccgtggaatcagagctcatgagactgcacaatctggctggcccgccaaggtttctcttccccataaaagaggaagaaaaggaggatttggaatctgaagatgcaaaatctagaagagggtccagaacaaggagtttgagtgatctgattttggcagtggataacccatttctcactactcctttgccttctccaccattaaagtcttcacctttgaaccctctggactcttacaagcaccatggattcaaccctctctttgaatcctcaacagaggctgagatgaacaggctgagatcttcaccacctccaaagttcaagtttttaagggatgcagaggagaagttgctgaagagattgatggaagaagcagagaaaagggcatctagaaattcggggcctgctcaaaatcaagactttggggtaaaagctccatctatttcgacaatggggacagaagaaaaagatgggtcttttataagactcattgttggtaagaacaaggagagtcagagagagcttcatagtggtaatctgccacagtttccttcaagctcttccaaggtactcccactggcttcatctcctctaggcccttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

553

Amino Acids

63.3

Weight (kDa)

7.72

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59350 AT5G59350 AT5G59350
fragaria_vesca	FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750
malus_domestica	MD00G1137200.v1.1 MD11G1111600.v1.1
prunus_persica	Prupe.6G080000_v2.0.a1 Prupe.6G080000_v2.0.a1
pyrus_communis	pycom03g07910 pycom11g09220 pycom16g22780
rosa_chinensis	RchiOBHm_Chr5g0063921
rosa_laevigata	RLG00000035689
rosa_multiflora	Rmu_sc0000552.1_g000025
rosa_roxburghii	Rroxscaffold_1G00016850
rosa_rugosa	Rorug05G0361100 Rorug05G0361100 Rorug05G0361100
rosa_samantha	Rh5AG419600 Rh5BG435500 Rh5CG458600 Rh5DG448600
rosa_wichuraiana	Rw5G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1538
AarI	CACCTGC	1 cut(s)	610
Acc36I	ACCTGC	1 cut(s)	610
Acc65I	GGTACC	1 cut(s)	892
AccB1I	GGYRCC	2 cut(s)	786, 892
AccBSI	CCGCTC	1 cut(s)	612
AccII	CGCG	1 cut(s)	39
AciI	CCGC	8 cut(s)	47, 64, 95, 526, 529, 565, 610, 1103
AclWI	GGATC	2 cut(s)	299, 436
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	1450
AcuI	CTGAAG	4 cut(s)	325, 640, 1176, 1430
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	894, 1626
AfiI	CCNNNNNNNGG	4 cut(s)	796, 889, 1006, 1188
AflII	CTTAAG	1 cut(s)	314
AhlI	ACTAGT	2 cut(s)	14, 628
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
Alw21I	GWGCWC	2 cut(s)	14, 1077
Alw26I	GTCTC	1 cut(s)	1075
AlwI	GGATC	2 cut(s)	299, 436
AlwNI	CAGNNNCTG	1 cut(s)	1337
AoxI	GGCC	6 cut(s)	246, 523, 1041, 1099, 1457, 1651
ApeKI	GCWGC	3 cut(s)	61, 119, 496
ApoI	RAATTY	1 cut(s)	1450
Asp718I	GGTACC	1 cut(s)	892
AspLEI	GCGC	2 cut(s)	39, 41
AspS9I	GGNCC	4 cut(s)	1100, 1179, 1457, 1652
AsuC2I	CCSGG	1 cut(s)	682
AsuHPI	GGTGA	6 cut(s)	64, 109, 539, 1064, 1260, 1353
AvaII	GGWCC	1 cut(s)	1179
AxyI	CCTNAGG	2 cut(s)	32, 509
BanI	GGYRCC	2 cut(s)	786, 892
BanII	GRGCYC	1 cut(s)	1077
BbsI	GAAGAC	2 cut(s)	1062, 1257
Bbv12I	GWGCWC	2 cut(s)	14, 1077
BbvI	GCAGC	3 cut(s)	73, 106, 508
BceAI	ACGGC	1 cut(s)	567
BcgI	CGANNNNNNTGC	2 cut(s)	594, 628
BcnI	CCSGG	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	1075
BcuI	ACTAGT	2 cut(s)	14, 628
BfaI	CTAG	7 cut(s)	15, 126, 629, 993, 1170, 1446, 1649
BfmI	CTRYAG	1 cut(s)	739
BfrI	CTTAAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	610
BglII	AGATCT	2 cut(s)	128, 1355
BisI	GCNGC	6 cut(s)	62, 65, 120, 497, 526, 529
BlsI	GCNGC	6 cut(s)	63, 66, 121, 498, 527, 530
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	1 cut(s)	1179
BmgT120I	GGNCC	4 cut(s)	1100, 1179, 1457, 1652
BmiI	GGNNCC	6 cut(s)	347, 788, 894, 1018, 1180, 1458
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	1022
BmsI	GCATC	4 cut(s)	550, 1150, 1381, 1451
BmuI	ACTGGG	1 cut(s)	1022
BpiI	GAAGAC	2 cut(s)	1062, 1257
Bpu10I	CCTNAGC	2 cut(s)	240, 309
BpuEI	CTTGAG	1 cut(s)	790
BpuMI	CCSGG	1 cut(s)	682
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	4 cut(s)	1062, 1106, 1300, 1620
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 1183, 1213
Bsc4I	CCNNNNNNNGG	4 cut(s)	796, 889, 1006, 1188
Bse1I	ACTGG	3 cut(s)	337, 1017, 1638
Bse21I	CCTNAGG	2 cut(s)	32, 509
BseDI	CCNNGG	4 cut(s)	1062, 1106, 1300, 1620
BseGI	GGATG	5 cut(s)	10, 27, 298, 586, 1396
BseLI	CCNNNNNNNGG	4 cut(s)	796, 889, 1006, 1188
BseMII	CTCAG	7 cut(s)	46, 254, 396, 523, 951, 1329, 1343
BseNI	ACTGG	3 cut(s)	337, 1017, 1638
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	6 cut(s)	384, 387, 428, 782, 1412, 1635
BseXI	GCAGC	3 cut(s)	73, 106, 508
BsgI	GTGCAG	3 cut(s)	80, 117, 1070
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	6 cut(s)	248, 525, 1043, 1101, 1459, 1653
BshNI	GGYRCC	2 cut(s)	786, 892
BsiHKAI	GWGCWC	2 cut(s)	14, 1077
BsiSI	CCGG	2 cut(s)	493, 682
BslFI	GGGAC	1 cut(s)	1525
BslI	CCNNNNNNNGG	4 cut(s)	796, 889, 1006, 1188
BsmAI	GTCTC	1 cut(s)	1075
BsmFI	GGGAC	1 cut(s)	1525
BsnI	GGCC	6 cut(s)	248, 525, 1043, 1101, 1459, 1653
Bsp1286I	GDGCHC	2 cut(s)	14, 1077
Bsp143I	GATC	5 cut(s)	128, 304, 441, 1201, 1355
Bsp19I	CCATGG	1 cut(s)	1300
BspACI	CCGC	8 cut(s)	47, 64, 95, 526, 529, 565, 610, 1103
BspANI	GGCC	6 cut(s)	248, 525, 1043, 1101, 1459, 1653
BspCNI	CTCAG	7 cut(s)	45, 253, 397, 522, 952, 1330, 1344
BspFNI	CGCG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	1077
BspLI	GGNNCC	6 cut(s)	347, 788, 894, 1018, 1180, 1458
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	2 cut(s)	299, 436
BspQI	GCTCTTC	1 cut(s)	1621
BspT107I	GGYRCC	2 cut(s)	786, 892
BspTI	CTTAAG	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	612
BsrI	ACTGG	3 cut(s)	337, 1017, 1638
BssECI	CCNNGG	4 cut(s)	1062, 1106, 1300, 1620
BssHII	GCGCGC	1 cut(s)	37
BssMI	GATC	5 cut(s)	128, 304, 441, 1201, 1355
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	3 cut(s)	1106, 1300, 1620
Bst4CI	ACNGT	2 cut(s)	1063, 1602
Bst6I	CTCTTC	5 cut(s)	382, 1121, 1168, 1406, 1621
BstACI	GRCGYC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	7 cut(s)	39, 379, 516, 614, 1099, 1103, 1461
BstDEI	CTNAG	8 cut(s)	32, 240, 309, 405, 509, 960, 1338, 1352
BstDSI	CCRYGG	2 cut(s)	1062, 1300
BstF5I	GGATG	5 cut(s)	10, 27, 298, 586, 1396
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	39, 41
BstKTI	GATC	5 cut(s)	131, 307, 444, 1204, 1358
BstMAI	GTCTC	1 cut(s)	1075
BstMBI	GATC	5 cut(s)	128, 304, 441, 1201, 1355
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 345, 496, 806
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	1 cut(s)	739
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	73, 106, 508
BstV2I	GAAGAC	2 cut(s)	1062, 1257
BstX2I	RGATCY	2 cut(s)	128, 1355
BstYI	RGATCY	2 cut(s)	128, 1355
Bsu36I	CCTNAGG	2 cut(s)	32, 509
BsuRI	GGCC	6 cut(s)	248, 525, 1043, 1101, 1459, 1653
BtgI	CCRYGG	2 cut(s)	1062, 1300
BtsCI	GGATG	5 cut(s)	10, 27, 298, 586, 1396
BtsI	GCAGTG	1 cut(s)	1221
BtsIMutI	CAGTG	2 cut(s)	1221, 1631
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	7 cut(s)	39, 379, 516, 614, 1099, 1103, 1461
CaiI	CAGNNNCTG	1 cut(s)	1337
CciI	TCATGA	1 cut(s)	1077
CfoI	GCGC	2 cut(s)	39, 41
Cfr13I	GGNCC	4 cut(s)	1100, 1179, 1457, 1652
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	893, 1625
CviAII	CATG	5 cut(s)	42, 149, 271, 1078, 1301
CviQI	GTAC	2 cut(s)	893, 1625
DdeI	CTNAG	8 cut(s)	32, 240, 309, 405, 509, 960, 1338, 1352
DpnI	GATC	5 cut(s)	130, 306, 443, 1203, 1357
DpnII	GATC	5 cut(s)	128, 304, 441, 1201, 1355
DraI	TTTAAA	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	5 cut(s)	382, 1121, 1168, 1406, 1621
EarI	CTCTTC	5 cut(s)	382, 1121, 1168, 1406, 1621
Ecl136II	GAGCTC	1 cut(s)	1075
Eco130I	CCWWGG	3 cut(s)	1106, 1300, 1620
Eco24I	GRGCYC	1 cut(s)	1077
Eco47I	GGWCC	1 cut(s)	1179
Eco53kI	GAGCTC	1 cut(s)	1075
Eco57I	CTGAAG	4 cut(s)	325, 640, 1176, 1430
Eco81I	CCTNAGG	2 cut(s)	32, 509
EcoICRI	GAGCTC	1 cut(s)	1075
EcoO109I	RGGNCCY	2 cut(s)	1457, 1652
EcoT14I	CCWWGG	3 cut(s)	1106, 1300, 1620
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	3 cut(s)	1106, 1300, 1620
FaeI	CATG	5 cut(s)	45, 152, 274, 1081, 1304
FalI	AAGNNNNNCTT	2 cut(s)	881, 913
FaqI	GGGAC	1 cut(s)	1525
FatI	CATG	5 cut(s)	41, 148, 270, 1077, 1300
FauI	CCCGC	2 cut(s)	40, 1110
Fnu4HI	GCNGC	6 cut(s)	62, 65, 120, 497, 526, 529
FokI	GGATG	5 cut(s)	14, 17, 305, 573, 1403
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	6 cut(s)	62, 65, 120, 497, 526, 529
FspBI	CTAG	7 cut(s)	15, 126, 629, 993, 1170, 1446, 1649
GlaI	GCGC	2 cut(s)	38, 40
GluI	GCNGC	6 cut(s)	62, 65, 120, 497, 526, 529
HaeIII	GGCC	6 cut(s)	248, 525, 1043, 1101, 1459, 1653
HapII	CCGG	2 cut(s)	493, 682
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	2 cut(s)	39, 41
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	5 cut(s)	45, 152, 274, 1081, 1304
Hin6I	GCGC	2 cut(s)	37, 39
HinP1I	GCGC	2 cut(s)	37, 39
HindIII	AAGCTT	1 cut(s)	311
HpaII	CCGG	2 cut(s)	493, 682
HphI	GGTGA	6 cut(s)	64, 109, 539, 1064, 1260, 1353
Hpy188I	TCNGA	7 cut(s)	229, 555, 961, 1072, 1156, 1206, 1572
HpyAV	CCTTC	3 cut(s)	1033, 1257, 1617
HpyCH4III	ACNGT	2 cut(s)	1063, 1602
HpyCH4V	TGCA	8 cut(s)	61, 134, 328, 605, 934, 1087, 1163, 1394
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 345, 496, 806
HpyF3I	CTNAG	8 cut(s)	32, 240, 309, 405, 509, 960, 1338, 1352
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	45, 152, 274, 1081, 1304
HspAI	GCGC	2 cut(s)	37, 39
KpnI	GGTACC	1 cut(s)	896
Kzo9I	GATC	5 cut(s)	128, 304, 441, 1201, 1355
LguI	GCTCTTC	1 cut(s)	1621
LmnI	GCTCC	4 cut(s)	345, 374, 495, 1495
Lsp1109I	GCAGC	3 cut(s)	73, 106, 508
LweI	GCATC	4 cut(s)	550, 1150, 1381, 1451
MaeI	CTAG	7 cut(s)	15, 126, 629, 993, 1170, 1446, 1649
MaeIII	GTNAC	5 cut(s)	545, 635, 650, 721, 995
MalI	GATC	5 cut(s)	130, 306, 443, 1203, 1357
MbiI	CCGCTC	1 cut(s)	612
MboI	GATC	5 cut(s)	128, 304, 441, 1201, 1355
MfeI	CAATTG	1 cut(s)	925
MflI	RGATCY	2 cut(s)	128, 1355
MhlI	GDGCHC	2 cut(s)	14, 1077
MluCI	AATT	6 cut(s)	871, 902, 925, 988, 1045, 1450
MlyI	GAGTC	4 cut(s)	87, 1280, 1536, 1576
MseI	TTAA	6 cut(s)	315, 717, 915, 1259, 1385, 1660
MspA1I	CMGCKG	1 cut(s)	64
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	2 cut(s)	493, 682
MspR9I	CCNGG	1 cut(s)	682
MunI	CAATTG	1 cut(s)	925
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	245, 345, 496, 806
NciI	CCSGG	1 cut(s)	682
NcoI	CCATGG	1 cut(s)	1300
NdeII	GATC	5 cut(s)	128, 304, 441, 1201, 1355
NlaIII	CATG	5 cut(s)	45, 152, 274, 1081, 1304
NlaIV	GGNNCC	6 cut(s)	347, 788, 894, 1018, 1180, 1458
NmuCI	GTSAC	4 cut(s)	545, 650, 721, 995
PagI	TCATGA	1 cut(s)	1077
PaqCI	CACCTGC	1 cut(s)	610
PauI	GCGCGC	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	1621
PfeI	GAWTC	8 cut(s)	556, 735, 843, 1028, 1067, 1151, 1305, 1322
PkrI	GCNGC	6 cut(s)	63, 66, 121, 498, 527, 530
PleI	GAGTC	4 cut(s)	86, 1280, 1536, 1575
PpsI	GAGTC	4 cut(s)	86, 1280, 1536, 1575
PsiI	TTATAA	1 cut(s)	1538
Psp124BI	GAGCTC	1 cut(s)	1077
PspN4I	GGNNCC	6 cut(s)	347, 788, 894, 1018, 1180, 1458
PspPI	GGNCC	4 cut(s)	1100, 1179, 1457, 1652
PstNI	CAGNNNCTG	1 cut(s)	1337
PsuI	RGATCY	2 cut(s)	128, 1355
PteI	GCGCGC	1 cut(s)	37
RsaI	GTAC	2 cut(s)	894, 1626
RsaNI	GTAC	2 cut(s)	893, 1625
SacI	GAGCTC	1 cut(s)	1077
SapI	GCTCTTC	1 cut(s)	1621
SaqAI	TTAA	6 cut(s)	315, 717, 915, 1259, 1385, 1660
SatI	GCNGC	6 cut(s)	62, 65, 120, 497, 526, 529
Sau3AI	GATC	5 cut(s)	128, 304, 441, 1201, 1355
Sau96I	GGNCC	4 cut(s)	1100, 1179, 1457, 1652
SchI	GAGTC	4 cut(s)	87, 1280, 1536, 1576
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	2 cut(s)	14, 1077
SfaNI	GCATC	4 cut(s)	550, 1150, 1381, 1451
SfcI	CTRYAG	1 cut(s)	739
SinI	GGWCC	1 cut(s)	1179
SmlI	CTYRAG	2 cut(s)	314, 769
SmoI	CTYRAG	2 cut(s)	314, 769
SpeI	ACTAGT	2 cut(s)	14, 628
Sse9I	AATT	6 cut(s)	871, 902, 925, 988, 1045, 1450
SsiI	CCGC	8 cut(s)	47, 64, 95, 526, 529, 565, 610, 1103
SspMI	CTAG	7 cut(s)	15, 126, 629, 993, 1170, 1446, 1649
SstI	GAGCTC	1 cut(s)	1077
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	3 cut(s)	1106, 1300, 1620
TaaI	ACNGT	2 cut(s)	1063, 1602
TaqI	TCGA	4 cut(s)	397, 440, 462, 1502
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	6 cut(s)	871, 902, 925, 988, 1045, 1450
TauI	GCSGC	3 cut(s)	67, 528, 531
TfiI	GAWTC	8 cut(s)	556, 735, 843, 1028, 1067, 1151, 1305, 1322
Tru1I	TTAA	6 cut(s)	315, 717, 915, 1259, 1385, 1660
Tru9I	TTAA	6 cut(s)	315, 717, 915, 1259, 1385, 1660
TscAI	CASTG	2 cut(s)	1221, 1638
TseFI	GTSAC	4 cut(s)	545, 650, 721, 995
TseI	GCWGC	3 cut(s)	61, 119, 496
Tsp45I	GTSAC	4 cut(s)	545, 650, 721, 995
TspDTI	ATGAA	4 cut(s)	16, 1358, 1571, 1629
TspRI	CASTG	2 cut(s)	1221, 1638
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	1179
XapI	RAATTY	1 cut(s)	1450
XbaI	TCTAGA	2 cut(s)	1169, 1445
XspI	CTAG	7 cut(s)	15, 126, 629, 993, 1170, 1446, 1649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.