Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005621

Physical Location & Seq

Genomic Coordinates Reverse (-)

7403915 .. 7404853

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACTTCTTTCAGTGGATTGGGAATTGGGTTGGGCATAGTTTTTGGGTGCCTGCTGTTGGCACTTGTTGCAGAGCTTTACTACCTGCTATGGGGGAAGAAGAGAATCACCAACAGAGAGATTGAGGAGGAAGAAGATGATGGTTACATCACCAGCCATGCAAAGGAAATCTTCCAATTTAATTGCTTCAAAAAACCCAATTCTTTTCACACCAGCAGCGATGGAAATTCAAATTCCCATGAGAATTTGAGAGAGCCAGATGTGAATGTCAATGGAAGTAGCGAGCCAGATTTGGAACTGGGTTCTAGCACGGATTTGCTGTTGAAGCTCAATGGGGAAGAAAATGTGGAAATCTCAGAGCTGATGAGGCTGCACAATCTTGCTGGCCCACCAAGGTTTTTGTTCACAATCAAGGAGGAAGAAAAGGAGGATTTGGAATCAGAAGATGGGAAGTCTAGAAGCAGCAGAAAAAGGTCAAGGACTAGAAGTTTGAGTGATCTGATTTTGGCAGTGGACACACCTTTTCTCTCCCCTATGCCTTCCCCATCAGTAAAGTCTTCACCTTTGAGCAATTTGGAGGCCTACAAACACCATGGATTCAACCCCCTCTTTGAATCCTCCACAGAAGCTGATATGAACAGGCTGAGATCTTCACCCCCTCCAAAGTTCAAGTTCTTGAGAGATGCAGAGGAGAAGCTGCTGAGGAGATTGATGGAGGAAGCTGAGAAAAGAGCAGCTAAAAATGGTGGGTCTGCAGCTTCTGCAGCTCAAGATTGTGGGGTGAAAGCTTCAACAAATTCAACAATGGCTGCAGAAGAGAGAGATGGGTCTTTTATAAGACTCATTGCTGGCAAGAACAAGGAGAATCATCAGAATCCTCCAAGCTCTTCCAAGGTACTTCCACTGGCTTCTTCTCCTACAATGTCCAAACCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

34.48

Weight (kDa)

5.77

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59350 AT5G59350 AT5G59350
fragaria_vesca	FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750
malus_domestica	MD00G1137200.v1.1 MD11G1111600.v1.1
prunus_persica	Prupe.6G080000_v2.0.a1 Prupe.6G080000_v2.0.a1
pyrus_communis	pycom03g07910 pycom11g09220 pycom16g22780
rosa_chinensis	RchiOBHm_Chr5g0063921
rosa_laevigata	RLG00000035689
rosa_multiflora	Rmu_sc0000552.1_g000025
rosa_roxburghii	Rroxscaffold_1G00016850
rosa_rugosa	Rorug05G0361100 Rorug05G0361100 Rorug05G0361100
rosa_samantha	Rh5AG419600 Rh5BG435500 Rh5CG458600 Rh5DG448600
rosa_wichuraiana	Rw5G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
Acc36I	ACCTGC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	48
AcsI	RAATTY	4 cut(s)	226, 232, 244, 796
AfaI	GTAC	1 cut(s)	897
AfiI	CCNNNNNNNGG	3 cut(s)	58, 91, 163
AgsI	TTSAA	8 cut(s)	190, 231, 325, 601, 614, 670, 792, 801
AlwNI	CAGNNNCTG	2 cut(s)	629, 761
AoxI	GGCC	2 cut(s)	385, 579
ApeKI	GCWGC	8 cut(s)	216, 370, 462, 697, 734, 755, 764, 809
ApoI	RAATTY	4 cut(s)	226, 232, 244, 796
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	5 cut(s)	100, 142, 552, 645, 793
BanI	GGYRCC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	549
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	8 cut(s)	228, 357, 474, 684, 746, 767, 776, 796
BccI	CCATC	6 cut(s)	134, 215, 440, 553, 706, 818
BfaI	CTAG	3 cut(s)	306, 456, 483
BfmI	CTRYAG	3 cut(s)	753, 762, 810
BfuAI	ACCTGC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	8 cut(s)	217, 371, 463, 698, 735, 756, 765, 810
BlsI	GCNGC	8 cut(s)	218, 372, 464, 699, 736, 757, 766, 811
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	673
BmuI	ACTGGG	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	2 cut(s)	697, 753
BsaJI	CCNNGG	3 cut(s)	392, 592, 891
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 91, 163
Bse1I	ACTGG	2 cut(s)	303, 909
Bse3DI	GCAATG	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	392, 592, 891
BseLI	CCNNNNNNNGG	3 cut(s)	58, 91, 163
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	4 cut(s)	369, 635, 692, 714
BseNI	ACTGG	2 cut(s)	303, 909
BseRI	GAGGAG	3 cut(s)	140, 704, 718
BseXI	GCAGC	8 cut(s)	228, 357, 474, 684, 746, 767, 776, 796
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	2 cut(s)	387, 581
BshNI	GGYRCC	1 cut(s)	48
BslI	CCNNNNNNNGG	3 cut(s)	58, 91, 163
BsnI	GGCC	2 cut(s)	387, 581
Bsp143I	GATC	2 cut(s)	496, 647
Bsp19I	CCATGG	1 cut(s)	592
BspANI	GGCC	2 cut(s)	387, 581
BspCNI	CTCAG	4 cut(s)	368, 636, 693, 715
BspLI	GGNNCC	1 cut(s)	50
BspMAI	CTGCAG	3 cut(s)	757, 766, 814
BspMI	ACCTGC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	892
BspT107I	GGYRCC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	843
BsrI	ACTGG	2 cut(s)	303, 909
BssECI	CCNNGG	3 cut(s)	392, 592, 891
BssMI	GATC	2 cut(s)	496, 647
BssT1I	CCWWGG	3 cut(s)	392, 592, 891
Bst6I	CTCTTC	3 cut(s)	95, 810, 892
BstAPI	GCANNNNNTGC	2 cut(s)	68, 761
BstC8I	GCNNGC	4 cut(s)	53, 284, 385, 850
BstDEI	CTNAG	4 cut(s)	355, 644, 701, 723
BstDSI	CCRYGG	1 cut(s)	592
BstKTI	GATC	2 cut(s)	499, 650
BstMBI	GATC	2 cut(s)	496, 647
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 325, 367, 761, 764
BstSFI	CTRYAG	3 cut(s)	753, 762, 810
BstV1I	GCAGC	8 cut(s)	228, 357, 474, 684, 746, 767, 776, 796
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	2 cut(s)	387, 581
BtgI	CCRYGG	1 cut(s)	592
BtgZI	GCGATG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	3 cut(s)	19, 516, 902
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	4 cut(s)	53, 284, 385, 850
CaiI	CAGNNNCTG	2 cut(s)	629, 761
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	896
CviAII	CATG	3 cut(s)	158, 239, 593
CviQI	GTAC	1 cut(s)	896
DdeI	CTNAG	4 cut(s)	355, 644, 701, 723
DpnI	GATC	2 cut(s)	498, 649
DpnII	GATC	2 cut(s)	496, 647
Eam1104I	CTCTTC	3 cut(s)	95, 810, 892
EarI	CTCTTC	3 cut(s)	95, 810, 892
Eco130I	CCWWGG	3 cut(s)	392, 592, 891
Eco147I	AGGCCT	1 cut(s)	581
EcoT14I	CCWWGG	3 cut(s)	392, 592, 891
ErhI	CCWWGG	3 cut(s)	392, 592, 891
FaeI	CATG	3 cut(s)	161, 242, 596
FaiI	YATR	8 cut(s)	38, 91, 159, 240, 536, 594, 635, 836
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	3 cut(s)	157, 238, 592
Fnu4HI	GCNGC	8 cut(s)	217, 371, 463, 698, 735, 756, 765, 810
Fsp4HI	GCNGC	8 cut(s)	217, 371, 463, 698, 735, 756, 765, 810
FspBI	CTAG	3 cut(s)	306, 456, 483
GluI	GCNGC	8 cut(s)	217, 371, 463, 698, 735, 756, 765, 810
HaeIII	GGCC	2 cut(s)	387, 581
Hin1II	CATG	3 cut(s)	161, 242, 596
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	7 cut(s)	105, 437, 597, 614, 840, 865, 874
HphI	GGTGA	5 cut(s)	100, 142, 552, 645, 793
Hpy166II	GTNNAC	2 cut(s)	405, 514
Hpy188I	TCNGA	4 cut(s)	358, 442, 501, 873
Hpy188III	TCNNGA	3 cut(s)	456, 676, 770
Hpy8I	GTNNAC	2 cut(s)	405, 514
HpyAV	CCTTC	1 cut(s)	549
HpyCH4V	TGCA	7 cut(s)	71, 161, 373, 686, 755, 764, 812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 325, 367, 761, 764
HpyF3I	CTNAG	4 cut(s)	355, 644, 701, 723
Hsp92II	CATG	3 cut(s)	161, 242, 596
Kzo9I	GATC	2 cut(s)	496, 647
LguI	GCTCTTC	1 cut(s)	892
Lsp1109I	GCAGC	8 cut(s)	228, 357, 474, 684, 746, 767, 776, 796
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	3 cut(s)	306, 456, 483
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	498, 649
MboI	GATC	2 cut(s)	496, 647
MflI	RGATCY	1 cut(s)	647
MluCI	AATT	9 cut(s)	24, 176, 181, 199, 226, 232, 244, 571, 796
MlyI	GAGTC	1 cut(s)	834
MseI	TTAA	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	68, 325, 367, 761, 764
NcoI	CCATGG	1 cut(s)	592
NdeII	GATC	2 cut(s)	496, 647
NlaIII	CATG	3 cut(s)	161, 242, 596
NlaIV	GGNNCC	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	892
PfeI	GAWTC	6 cut(s)	105, 437, 597, 614, 865, 874
PkrI	GCNGC	8 cut(s)	218, 372, 464, 699, 736, 757, 766, 811
PleI	GAGTC	1 cut(s)	834
PpsI	GAGTC	1 cut(s)	834
PsiI	TTATAA	1 cut(s)	836
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	3 cut(s)	757, 766, 814
PstNI	CAGNNNCTG	2 cut(s)	629, 761
PsuI	RGATCY	1 cut(s)	647
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	8 cut(s)	217, 371, 463, 698, 735, 756, 765, 810
Sau3AI	GATC	2 cut(s)	496, 647
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	834
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	3 cut(s)	753, 762, 810
SmlI	CTYRAG	2 cut(s)	676, 768
SmoI	CTYRAG	2 cut(s)	676, 768
Sse9I	AATT	9 cut(s)	24, 176, 181, 199, 226, 232, 244, 571, 796
SseBI	AGGCCT	1 cut(s)	581
SspMI	CTAG	3 cut(s)	306, 456, 483
StuI	AGGCCT	1 cut(s)	581
StyI	CCWWGG	3 cut(s)	392, 592, 891
TasI	AATT	9 cut(s)	24, 176, 181, 199, 226, 232, 244, 571, 796
TfiI	GAWTC	6 cut(s)	105, 437, 597, 614, 865, 874
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	19, 516, 909
TseI	GCWGC	8 cut(s)	216, 370, 462, 697, 734, 755, 764, 809
TspDTI	ATGAA	1 cut(s)	650
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	3 cut(s)	19, 516, 909
XapI	RAATTY	4 cut(s)	226, 232, 244, 796
XbaI	TCTAGA	1 cut(s)	455
XspI	CTAG	3 cut(s)	306, 456, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.