Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010889

Physical Location & Seq

Genomic Coordinates Reverse (-)

24274876 .. 24276122

Gene Structure 1247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGAGACGTAACCGTGGGGTGACAAGGCGCGAAAGGCCGAACCTACTGATCACGGGGACTCCTGGTACCGGCAAATCGACGACGGCTTCTGCTCTAGCCGAAGCCACGAATCTCCGGTATATTTGCATCGGAGATCTGGTCAAAGAGAAAGAATTCTACCATGGCTGGGACAATGAGCTCGAGTGTCACTTCATCAACGAAGACTCGGTGATTGATGAGCTTGACGATGCTATGATAGAAGGAGGGAACATTGTGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTTTGATCGCGTTGTCGTGCTTCGAACCGAGAACTCCGTTTTGTATGACCGTTTAACGAATAGGGGTTATTCAGGAACCAAGCTTAGTAACAACCTTCAATGCGAAATGTATCAAGTCCTACTCGAAGAAGCACATGACAGTTATGATGAGGAAATTGTCACTGAACTACAAAGTAACACAATCGAAGATATCTCTAACAATGTCTCCACTTTGACGGATTGGATTAATGCATGGCAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0046939 GO:0046940 GO:0048589 GO:0048856 GO:0048869 GO:0050145 GO:0055086 GO:0060560 GO:0071704 GO:0071840 GO:0080186 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 ko03008 map00230 map01100 map01110 map01130 map03008

Pfam Domains

Protein Families

AAA_18

Protein Analysis

178

Amino Acids

20.44

Weight (kDa)

4.54

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	17 - 135	1.7e-29	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60340
fragaria_vesca	FvH4_5g29720
malus_domestica	MD10G1078500.v1.1
prunus_persica	Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.8G100300_v2.0.a1
pyrus_communis	pycom10g06170
rosa_chinensis	RchiOBHm_Chr7g0223211
rosa_multiflora	Rmu_sc0002192.1_g000010 Rmu_sc0009034.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236020
rosa_rugosa	Rorug07G0213500 Rorug07G0213600.1 Rorug07G0213700
rosa_samantha	Rh7AG358800 Rh7BG346700 Rh7CG377200 Rh7DG354100
rosa_wichuraiana	Rw7G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AccII	CGCG	2 cut(s)	33, 303
AcsI	RAATTY	1 cut(s)	155
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	2 cut(s)	71, 169
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	3 cut(s)	181, 223, 376
AluI	AGCT	3 cut(s)	181, 223, 376
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	155
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	34, 223
AsuII	TTCGAA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	285
BccI	CCATC	1 cut(s)	285
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	70, 370
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	138, 220
BpiI	GAAGAC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	16, 163, 265
BsaWI	WCCGGW	1 cut(s)	117
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 126, 156, 482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 169
Bse118I	RCCGGY	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	16, 163, 265
BseLI	CCNNNNNNNGG	2 cut(s)	71, 169
BseMII	CTCAG	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	2 cut(s)	33, 303
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	72, 118
BslFI	GGGAC	2 cut(s)	73, 185
BslI	CCNNNNNNNGG	2 cut(s)	71, 169
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	2 cut(s)	73, 185
BsnI	GGCC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	51, 136, 298
Bsp19I	CCATGG	2 cut(s)	163, 265
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	2 cut(s)	33, 303
BspLI	GGNNCC	2 cut(s)	70, 370
BspT104I	TTCGAA	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	16, 163, 265
BssMI	GATC	3 cut(s)	51, 136, 298
BssT1I	CCWWGG	2 cut(s)	163, 265
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	17, 344, 434
BstBI	TTCGAA	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	285, 377
BstDSI	CCRYGG	3 cut(s)	16, 163, 265
BstFNI	CGCG	2 cut(s)	33, 303
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	54, 139, 301
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	3 cut(s)	51, 136, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	2 cut(s)	33, 303
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	3 cut(s)	16, 163, 265
BtgZI	GCGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	453
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	4 cut(s)	164, 266, 428, 525
CviJI	RGCY	9 cut(s)	40, 89, 101, 107, 168, 181, 223, 270, 376
CviKI_1	RGCY	9 cut(s)	40, 89, 101, 107, 168, 181, 223, 270, 376
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	2 cut(s)	285, 377
DpnI	GATC	3 cut(s)	53, 138, 300
DpnII	GATC	3 cut(s)	51, 136, 298
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	2 cut(s)	163, 265
Eco24I	GRGCYC	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	163, 265
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	2 cut(s)	163, 265
FaeI	CATG	4 cut(s)	167, 269, 431, 528
FaiI	YATR	8 cut(s)	123, 165, 236, 267, 339, 429, 438, 526
FaqI	GGGAC	2 cut(s)	73, 185
FatI	CATG	4 cut(s)	163, 265, 427, 524
FbaI	TGATCA	1 cut(s)	51
FriOI	GRGCYC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	32
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	2 cut(s)	72, 118
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	167, 269, 431, 528
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	3 cut(s)	61, 112, 206
HpaII	CCGG	2 cut(s)	72, 118
HphI	GGTGA	2 cut(s)	34, 223
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	2 cut(s)	85, 88
HpyAV	CCTTC	2 cut(s)	236, 398
HpyCH4III	ACNGT	3 cut(s)	17, 344, 434
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	129, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	285, 377
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	167, 269, 431, 528
HspAI	GCGC	1 cut(s)	31
KpnI	GGTACC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	51, 136, 298
LpnPI	CCDG	7 cut(s)	51, 78, 85, 125, 131, 154, 351
LweI	GCATC	2 cut(s)	138, 220
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	7 cut(s)	11, 22, 188, 272, 380, 451, 467
MalI	GATC	3 cut(s)	53, 138, 300
MboI	GATC	3 cut(s)	51, 136, 298
MboII	GAAGA	3 cut(s)	215, 431, 491
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	155, 447
MlyI	GAGTC	2 cut(s)	55, 200
MnlI	CCTC	3 cut(s)	239, 294, 436
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	2 cut(s)	347, 519
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	72, 118
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	2 cut(s)	33, 303
MwoI	GCNNNNNNNGC	1 cut(s)	37
NcoI	CCATGG	2 cut(s)	163, 265
NdeII	GATC	3 cut(s)	51, 136, 298
NlaIII	CATG	4 cut(s)	167, 269, 431, 528
NlaIV	GGNNCC	2 cut(s)	70, 370
NmuCI	GTSAC	4 cut(s)	22, 188, 272, 451
NsiI	ATGCAT	1 cut(s)	526
NspV	TTCGAA	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	55, 200
PpsI	GAGTC	2 cut(s)	55, 200
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	70, 370
PspXI	VCTCGAGB	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	347, 519
Sau3AI	GATC	3 cut(s)	51, 136, 298
SchI	GAGTC	2 cut(s)	55, 200
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	6 cut(s)	13, 48, 183, 225, 378, 390
SfaNI	GCATC	2 cut(s)	138, 220
Sfr274I	CTCGAG	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	316
SlaI	CTCGAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	155, 447
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	2 cut(s)	163, 265
TaaI	ACNGT	3 cut(s)	17, 344, 434
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	5 cut(s)	80, 183, 316, 417, 477
TasI	AATT	2 cut(s)	155, 447
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	347, 519
Tru9I	TTAA	2 cut(s)	347, 519
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	4 cut(s)	22, 188, 272, 451
Tsp45I	GTSAC	4 cut(s)	22, 188, 272, 451
TspDTI	ATGAA	1 cut(s)	184
TspGWI	ACGGA	2 cut(s)	319, 524
TspRI	CASTG	1 cut(s)	460
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	1 cut(s)	155
XhoI	CTCGAG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.