Rroxscaffold_3G00236020

Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
23240313 .. 23242819
2507 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00236020.1

Sequence Viewer

Length: 519 bp
ATGGCAAGGCAGAGGCCGAATATATTGGTGACTGGTACGCCCGGAACAGGGAAGACAACAATGTCGTCTGCCTTAGCAGAAGAGACACAGCTTCGCCACATCAACATAGGTGAGTTGGTCAAGGCAAAGAGCCTCCATGATGGCTGGGACAATGAGCTCGACTGTTATGTCATTAATGAAGACCTGGTGTGCGACGAGCTTGAAGATATGATGGAAGAAGGAGGGAACATAGTGGACTACCACGGTTGCGATTTCTTCCCTGAGAGATGGTTTGATCTTGTGGTTGTGCTTCAGACTGACAACACTGTCTTGTATGACCGTTTGACTCAAAGAGGGTATTCCGGCTCTAAACTTTCCAACAATGTTGAATGTGAAATATTTCAAACTCTGCTTGAGGAGGCAAAAGAGAGCTACCCGGAAAATATTGTACAACCTCTGAAGAGTGATAGCATTGAAGACATTTCAACGAATCTTGCTTCTTTGACTGATTGGGTGAGGAGGTGGCAACCATCAACTTAG

Protein Analysis

172

Amino Acids

19.56

Weight (kDa)

4.36

Isoelectric Point (pI)

63.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_18 PF13238 8 - 128 3.7e-34 AAA domain
AAA_17 PF13207 11 - 81 6.2e-07 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 61, 167, 305
AcuI CTGAAG 2 cut(s) 275, 458
AfaI GTAC 2 cut(s) 37, 429
AfiI CCNNNNNNNGG 2 cut(s) 47, 48
AgsI TTSAA 5 cut(s) 203, 368, 383, 455, 465
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 4 cut(s) 91, 157, 199, 411
AluI AGCT 4 cut(s) 91, 157, 199, 411
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 14
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 378
AsuC2I CCSGG 2 cut(s) 42, 416
AsuHPI GGTGA 3 cut(s) 40, 122, 505
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 3 cut(s) 59, 186, 462
Bbv12I GWGCWC 1 cut(s) 159
BccI CCATC 4 cut(s) 134, 205, 261, 517
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 2 cut(s) 42, 416
BcoDI GTCTC 1 cut(s) 77
Bme1390I CCNGG 3 cut(s) 42, 185, 416
BmrFI CCNGG 3 cut(s) 42, 185, 416
BpiI GAAGAC 3 cut(s) 59, 186, 462
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 42, 416
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 48
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 47, 48
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 410, 511
BseYI CCCAGC 1 cut(s) 144
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 3 cut(s) 42, 342, 416
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 47, 48
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 159
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 1 cut(s) 274
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 253
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 4 cut(s) 164, 245, 307, 320
Bst6I CTCTTC 2 cut(s) 75, 434
BstAUI TGTACA 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 73, 261, 516
BstDSI CCRYGG 1 cut(s) 241
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 274
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 3 cut(s) 40, 183, 414
BstV2I GAAGAC 3 cut(s) 59, 186, 462
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 303
CsiI ACCWGGT 1 cut(s) 183
Csp6I GTAC 2 cut(s) 36, 428
CviAII CATG 1 cut(s) 137
CviJI RGCY 8 cut(s) 16, 91, 132, 144, 157, 199, 345, 411
CviKI_1 RGCY 8 cut(s) 16, 91, 132, 144, 157, 199, 345, 411
CviQI GTAC 2 cut(s) 36, 428
DdeI CTNAG 3 cut(s) 73, 261, 516
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DrdI GACNNNNNNGTC 3 cut(s) 61, 167, 305
DseDI GACNNNNNNGTC 3 cut(s) 61, 167, 305
Eam1104I CTCTTC 2 cut(s) 75, 434
EarI CTCTTC 2 cut(s) 75, 434
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 275, 458
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 1 cut(s) 140
FaiI YATR 7 cut(s) 23, 107, 138, 168, 209, 230, 315
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 16
HapII CCGG 3 cut(s) 42, 342, 416
Hin1II CATG 1 cut(s) 140
HinfI GANTC 2 cut(s) 325, 469
HpaII CCGG 3 cut(s) 42, 342, 416
HphI GGTGA 3 cut(s) 40, 122, 505
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 294, 438
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 4 cut(s) 164, 245, 307, 320
HpyF3I CTNAG 3 cut(s) 73, 261, 516
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 9 cut(s) 18, 33, 55, 130, 170, 197, 273, 355, 429
MabI ACCWGGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 8 cut(s) 64, 92, 191, 215, 227, 247, 451, 467
MhlI GDGCHC 1 cut(s) 159
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 9 cut(s) 6, 143, 215, 326, 388, 391, 444, 489, 492
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 1 cut(s) 174
MspI CCGG 3 cut(s) 42, 342, 416
MspR9I CCNGG 3 cut(s) 42, 185, 416
MvaI CCWGG 1 cut(s) 185
NciI CCSGG 2 cut(s) 42, 416
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 469
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 1 cut(s) 183
RsaI GTAC 2 cut(s) 37, 429
RsaNI GTAC 2 cut(s) 36, 428
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 3 cut(s) 42, 185, 416
SduI GDGCHC 1 cut(s) 159
SetI ASST 8 cut(s) 93, 112, 159, 186, 201, 413, 436, 503
SexAI ACCWGGT 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
SspI AATATT 2 cut(s) 378, 424
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 3 cut(s) 40, 183, 414
TaaI ACNGT 4 cut(s) 164, 245, 307, 320
TaqI TCGA 1 cut(s) 159
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 310
VspI ATTAAT 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.