Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009034.1

Orthogroup ID

OG0010889

Physical Location & Seq

Genomic Coordinates Reverse (-)

5347 .. 5959

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009034.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggcaaggcagaggccgaatatattggtgactggcacgcccggaacagggaagacaacaatgtcgtctgccttagcagaagagacacagcttcgccacatcaacataggtgagttggtcaaggcaaagagcctccatgatggctgggacaatgagcttgactgttacgtcattaatgaagacctggtgtgcgacgagcttgaagatatgatggaagaaggagggaacatagtggactaccacggttgcgatttcttccctgagagatggtttgatcttgtggttgtgcttcagactgacaacactgtcttgtatgaccgtttgactcaaagagggtattccggctctaaactttccaacaatgttgaatgtgaaatatttcaaactctgcttgaggaggcaaaagagagctacccggaaaatattgtacaacctctgaagagtgatagcattgaagacatttcaacgaatctcgcttctttgactgattgggtgaggaggtggcaaccatcaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0046939 GO:0046940 GO:0048589 GO:0048856 GO:0048869 GO:0050145 GO:0055086 GO:0060560 GO:0071704 GO:0071840 GO:0080186 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 ko03008 map00230 map01100 map01110 map01130 map03008

Pfam Domains

Protein Families

AAA_18

Protein Analysis

172

Amino Acids

19.56

Weight (kDa)

4.36

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60340
fragaria_vesca	FvH4_5g29720
malus_domestica	MD10G1078500.v1.1
prunus_persica	Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.8G100300_v2.0.a1
pyrus_communis	pycom10g06170
rosa_chinensis	RchiOBHm_Chr7g0223211
rosa_multiflora	Rmu_sc0002192.1_g000010 Rmu_sc0009034.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236020
rosa_rugosa	Rorug07G0213500 Rorug07G0213600.1 Rorug07G0213700
rosa_samantha	Rh7AG358800 Rh7BG346700 Rh7CG377200 Rh7DG354100
rosa_wichuraiana	Rw7G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
AcuI	CTGAAG	2 cut(s)	275, 458
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	47, 48
AgsI	TTSAA	5 cut(s)	203, 368, 383, 455, 465
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	91, 157, 199, 411
AluI	AGCT	4 cut(s)	91, 157, 199, 411
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	14
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuC2I	CCSGG	2 cut(s)	42, 416
AsuHPI	GGTGA	3 cut(s)	40, 122, 505
BbsI	GAAGAC	3 cut(s)	59, 186, 462
BccI	CCATC	4 cut(s)	134, 205, 261, 517
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	2 cut(s)	42, 416
BcoDI	GTCTC	1 cut(s)	77
Bme1390I	CCNGG	3 cut(s)	42, 185, 416
BmrFI	CCNGG	3 cut(s)	42, 185, 416
BpiI	GAAGAC	3 cut(s)	59, 186, 462
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	42, 416
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 48
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	47, 48
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	410, 511
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	42, 342, 416
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	47, 48
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	4 cut(s)	164, 245, 307, 320
Bst6I	CTCTTC	2 cut(s)	75, 434
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	73, 261, 516
BstDSI	CCRYGG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	3 cut(s)	40, 183, 414
BstV2I	GAAGAC	3 cut(s)	59, 186, 462
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	8 cut(s)	16, 91, 132, 144, 157, 199, 345, 411
CviKI_1	RGCY	8 cut(s)	16, 91, 132, 144, 157, 199, 345, 411
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	3 cut(s)	73, 261, 516
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DrdI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
DseDI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
Eam1104I	CTCTTC	2 cut(s)	75, 434
EarI	CTCTTC	2 cut(s)	75, 434
Eco57I	CTGAAG	2 cut(s)	275, 458
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	140
FaiI	YATR	6 cut(s)	23, 107, 138, 209, 230, 315
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	136
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	3 cut(s)	42, 342, 416
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	2 cut(s)	325, 469
HpaII	CCGG	3 cut(s)	42, 342, 416
HphI	GGTGA	3 cut(s)	40, 122, 505
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	294, 438
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	4 cut(s)	164, 245, 307, 320
HpyCH4IV	ACGT	1 cut(s)	168
HpyF3I	CTNAG	3 cut(s)	73, 261, 516
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	18, 33, 55, 130, 170, 197, 273, 355, 429
MabI	ACCWGGT	1 cut(s)	183
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	28, 164
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	8 cut(s)	64, 92, 191, 215, 227, 247, 451, 467
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	9 cut(s)	6, 143, 215, 326, 388, 391, 444, 489, 492
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	174
MspI	CCGG	3 cut(s)	42, 342, 416
MspR9I	CCNGG	3 cut(s)	42, 185, 416
MvaI	CCWGG	1 cut(s)	185
NciI	CCSGG	2 cut(s)	42, 416
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	183
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	3 cut(s)	42, 185, 416
SetI	ASST	9 cut(s)	93, 112, 159, 171, 186, 201, 413, 436, 503
SexAI	ACCWGGT	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SspI	AATATT	2 cut(s)	378, 424
StyD4I	CCNGG	3 cut(s)	40, 183, 414
TaaI	ACNGT	4 cut(s)	164, 245, 307, 320
TaiI	ACGT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.