Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010889

Physical Location & Seq

Genomic Coordinates Forward (+)

11198202 .. 11200257

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1078500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTGAGGACAAGGCCAAACATATTGGTGACGGGCACGCCAGGAACTGGGAAGACAACAACATCGTCCGCCTTAGCAGAGGCAACGCAGCTCCGCCACATCAATGTGGGTGATTTGGTGAAAGCGAAGAATCTTCATGACGGCTGGGATGATGAGCTAGACTGTTACGTCATCAATGAAGACCTGGTATGCGATGAGCTTGAGGATACAATGGAGGAAGGAGGGAACATAGTGGACTACCATGGTTGCGATTTCTTCCCCGAGAGATGGTTTGATCTTGTGGTTGTGCTTCAGACTGACAACACTGTCTTGTATGACCGTTTGACTCGAAGAGGGTATTCGAATTCGAAGCTCTCCAACAATATTGAATGTGAAATATTTCAAACTCTGCTCGAGGAGGCAAAGGAGAGCTACCCTCAGGATATCGTGATTCCTTTGAAGAGTGATAGTATTCAAGACATTTCGACAAATCTTACGACTTTGACGGACTGGGTCACGAGGTGGCAACCATCATCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0046939 GO:0046940 GO:0048589 GO:0048856 GO:0048869 GO:0050145 GO:0055086 GO:0060560 GO:0071704 GO:0071840 GO:0080186 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 ko03008 map00230 map01100 map01110 map01130 map03008

Pfam Domains

Protein Families

AAA_18

Protein Analysis

174

Amino Acids

19.6

Weight (kDa)

4.35

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	8 - 128	1e-34	AAA domain
AAA_17	PF13207	11 - 83	8.1e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60340
fragaria_vesca	FvH4_5g29720
malus_domestica	MD10G1078500.v1.1
prunus_persica	Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.8G100300_v2.0.a1
pyrus_communis	pycom10g06170
rosa_chinensis	RchiOBHm_Chr7g0223211
rosa_multiflora	Rmu_sc0002192.1_g000010 Rmu_sc0009034.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236020
rosa_rugosa	Rorug07G0213500 Rorug07G0213600.1 Rorug07G0213700
rosa_samantha	Rh7AG358800 Rh7BG346700 Rh7CG377200 Rh7DG354100
rosa_wichuraiana	Rw7G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	167, 305
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	2 cut(s)	69, 94
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	47, 267
AgsI	TTSAA	4 cut(s)	368, 383, 439, 455
AjnI	CCWGG	2 cut(s)	40, 183
AluBI	AGCT	5 cut(s)	91, 157, 199, 352, 411
AluI	AGCT	5 cut(s)	91, 157, 199, 352, 411
AlwNI	CAGNNNCTG	1 cut(s)	47
Ama87I	CYCGRG	2 cut(s)	260, 392
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuHPI	GGTGA	4 cut(s)	16, 40, 122, 130
AsuII	TTCGAA	2 cut(s)	341, 347
AvaI	CYCGRG	2 cut(s)	260, 392
AxyI	CCTNAGG	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	496
BbsI	GAAGAC	2 cut(s)	59, 186
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	261, 517
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	42, 185
BciVI	GTATCC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	42, 185
BmeT110I	CYCGRG	2 cut(s)	260, 392
BmrFI	CCNGG	2 cut(s)	42, 185
BmrI	ACTGGG	2 cut(s)	57, 499
BmuI	ACTGGG	2 cut(s)	57, 499
BpiI	GAAGAC	2 cut(s)	59, 186
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu14I	TTCGAA	2 cut(s)	341, 347
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 267
Bse1I	ACTGG	2 cut(s)	52, 494
Bse21I	CCTNAGG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	42, 185
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	47, 267
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	52, 494
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	16
BsiHKCI	CYCGRG	2 cut(s)	260, 392
BslI	CCNNNNNNNGG	2 cut(s)	47, 267
BsnI	GGCC	1 cut(s)	16
BsoBI	CYCGRG	2 cut(s)	260, 392
Bsp119I	TTCGAA	2 cut(s)	341, 347
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	2 cut(s)	69, 94
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	136
BspT104I	TTCGAA	2 cut(s)	341, 347
BsrI	ACTGG	2 cut(s)	52, 494
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	274
BssSI	CACGAG	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	496
Bst2UI	CCWGG	2 cut(s)	42, 185
Bst4CI	ACNGT	3 cut(s)	164, 307, 320
Bst6I	CTCTTC	2 cut(s)	325, 434
BstBI	TTCGAA	2 cut(s)	341, 347
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	73, 417, 519
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	42, 185
BstSCI	CCNGG	2 cut(s)	40, 183
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	2 cut(s)	59, 186
Bsu36I	CCTNAGG	1 cut(s)	417
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	47
CciI	TCATGA	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	183
CviAII	CATG	2 cut(s)	137, 242
CviJI	RGCY	7 cut(s)	16, 91, 144, 157, 199, 352, 411
CviKI_1	RGCY	7 cut(s)	16, 91, 144, 157, 199, 352, 411
DdeI	CTNAG	3 cut(s)	73, 417, 519
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraIII	CACNNNGTG	1 cut(s)	501
DrdI	GACNNNNNNGTC	2 cut(s)	167, 305
DseDI	GACNNNNNNGTC	2 cut(s)	167, 305
Eam1104I	CTCTTC	2 cut(s)	325, 434
EarI	CTCTTC	2 cut(s)	325, 434
EciI	GGCGGA	2 cut(s)	58, 83
Eco130I	CCWWGG	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	2 cut(s)	260, 392
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	40, 183
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	140, 245
FaiI	YATR	6 cut(s)	23, 138, 190, 230, 243, 315
FatI	CATG	2 cut(s)	136, 241
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	89
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	140, 245
HinfI	GANTC	3 cut(s)	130, 325, 430
HphI	GGTGA	4 cut(s)	16, 40, 122, 130
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	5 cut(s)	137, 419, 427, 455, 496
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	164, 307, 320
HpyCH4IV	ACGT	1 cut(s)	168
HpyF3I	CTNAG	3 cut(s)	73, 417, 519
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	140, 245
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	8 cut(s)	27, 33, 54, 130, 170, 197, 404, 475
Lsp1109I	GCAGC	1 cut(s)	100
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	28, 164, 493
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	7 cut(s)	64, 125, 139, 191, 247, 342, 451
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	9 cut(s)	73, 196, 208, 215, 326, 388, 391, 426, 492
MroXI	GAANNNNTTC	1 cut(s)	378
MslI	CAYNNNNRTG	3 cut(s)	26, 102, 104
MspR9I	CCNGG	2 cut(s)	42, 185
MvaI	CCWGG	2 cut(s)	42, 185
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	140, 245
NmuCI	GTSAC	2 cut(s)	28, 493
NspV	TTCGAA	2 cut(s)	341, 347
PaeR7I	CTCGAG	1 cut(s)	392
PagI	TCATGA	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	130, 430
PflFI	GACNNNGTC	1 cut(s)	491
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	40, 183
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	40, 183
PspXI	VCTCGAGB	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	491
RseI	CAYNNNNRTG	3 cut(s)	26, 102, 104
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	42, 185
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	93, 159, 171, 186, 201, 354, 413, 503
SexAI	ACCWGGT	1 cut(s)	183
Sfr274I	CTCGAG	1 cut(s)	392
SfuI	TTCGAA	2 cut(s)	341, 347
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	3 cut(s)	26, 102, 104
SmlI	CTYRAG	2 cut(s)	200, 392
SmoI	CTYRAG	2 cut(s)	200, 392
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	2 cut(s)	69, 94
SspI	AATATT	2 cut(s)	364, 378
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	40, 183
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	3 cut(s)	164, 307, 320
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	5 cut(s)	328, 341, 347, 393, 464
TasI	AATT	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	130, 430
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	28, 493
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	2 cut(s)	28, 493
TspDTI	ATGAA	2 cut(s)	125, 192
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	491
Van91I	CCANNNNNTGG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.