FvH4_5g29720

Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
20653416 .. 20655179
1764 bp
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UTR
Exon/CDS
Intron
FvH4_5g29720.t1

Sequence Viewer

Length: 543 bp
ATGGCAAGGCAGAGGCCGAATATATTGGTAACCGGCACACCAGGCACAGGGAAGACAACAATGTCGTCAGTCTTAGCAGAAGAGACACAGCTTCGGCACATCAACATAGGGGACTTGGTCAAGGAAAAGAGCCTCCATGATGGCTGGGACGACGAGCTTGACTGTTACGTCATCAATGAAGACCTGGTGTGTGATGAGCTTGAAGATATGATGGAACAAGGAGGGAACATAGTGGACTACCACGGCTGCGATTTCTTCCCGGAGAGATGGTTTGATCTCGTAGTTGTGCTTCAGACTGACAACACTGTCTTGTATGACCGTTTGGCTCAGAGAGGGTACTCTGGCTCGAAGCTTTCGAACAATGTTGAATGTGAAATATTTCAAACTCTGCTGGAGGAGGCGAAAGAGAGCTACCCGGAAGATATCGTACGACCTCTGAAGAGTGATAGCATTGAAGACATTTCTGCAAATCTCACTTCTTTGACTGATTGGGTGAGGAGGTGGCAACCATCGACTGAGTCTGCACGGTGTAGTTCTGCTTGA

Protein Analysis

181

Amino Acids

20.43

Weight (kDa)

4.36

Isoelectric Point (pI)

63.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_18 PF13238 8 - 128 3.4e-35 AAA domain
AAA_17 PF13207 11 - 110 1e-07 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 61, 167, 305
AcuI CTGAAG 2 cut(s) 275, 458
AfaI GTAC 2 cut(s) 338, 429
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 4 cut(s) 203, 368, 383, 455
AjnI CCWGG 2 cut(s) 40, 183
AluBI AGCT 5 cut(s) 91, 157, 199, 352, 411
AluI AGCT 5 cut(s) 91, 157, 199, 352, 411
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 378
AsuC2I CCSGG 2 cut(s) 260, 416
AsuHPI GGTGA 1 cut(s) 505
AsuII TTCGAA 1 cut(s) 356
BarI GAAGNNNNNNTAC 4 cut(s) 273, 305, 411, 443
BbsI GAAGAC 3 cut(s) 59, 186, 462
BbvI GCAGC 1 cut(s) 233
BccI CCATC 4 cut(s) 134, 205, 261, 517
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 42, 185
BcnI CCSGG 2 cut(s) 260, 416
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 4 cut(s) 42, 185, 260, 416
BmrFI CCNGG 4 cut(s) 42, 185, 260, 416
BpiI GAAGAC 3 cut(s) 59, 186, 462
BpmI CTGGAG 1 cut(s) 413
Bpu14I TTCGAA 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 260, 416
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 32
BseBI CCWGG 2 cut(s) 42, 185
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 341, 507
BseRI GAGGAG 2 cut(s) 410, 511
BseXI GCAGC 1 cut(s) 233
BseYI CCCAGC 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 3 cut(s) 33, 260, 416
BsiWI CGTACG 1 cut(s) 427
BslFI GGGAC 2 cut(s) 125, 161
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 125, 161
BsnI GGCC 1 cut(s) 16
Bsp119I TTCGAA 1 cut(s) 356
Bsp143I GATC 1 cut(s) 274
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 340, 508
BspT104I TTCGAA 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 42, 185
Bst4CI ACNGT 4 cut(s) 164, 307, 320, 528
Bst6I CTCTTC 2 cut(s) 75, 434
BstBI TTCGAA 1 cut(s) 356
BstDEI CTNAG 3 cut(s) 73, 327, 516
BstDSI CCRYGG 1 cut(s) 241
BstEII GGTNACC 1 cut(s) 28
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 2 cut(s) 42, 185
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 4 cut(s) 40, 183, 258, 414
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 3 cut(s) 59, 186, 462
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 32
CsiI ACCWGGT 1 cut(s) 183
Csp6I GTAC 2 cut(s) 337, 428
CviAII CATG 1 cut(s) 137
CviQI GTAC 2 cut(s) 337, 428
DdeI CTNAG 3 cut(s) 73, 327, 516
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DrdI GACNNNNNNGTC 3 cut(s) 61, 167, 305
DseDI GACNNNNNNGTC 3 cut(s) 61, 167, 305
Eam1104I CTCTTC 2 cut(s) 75, 434
EarI CTCTTC 2 cut(s) 75, 434
Eco32I GATATC 1 cut(s) 424
Eco57I CTGAAG 2 cut(s) 275, 458
Eco91I GGTNACC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 40, 183
EcoRV GATATC 1 cut(s) 424
FaeI CATG 1 cut(s) 140
FaiI YATR 6 cut(s) 23, 107, 138, 209, 230, 315
FaqI GGGAC 2 cut(s) 125, 161
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 247
GsaI CCCAGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 1 cut(s) 16
HapII CCGG 3 cut(s) 33, 260, 416
Hin1II CATG 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 518
HpaII CCGG 3 cut(s) 33, 260, 416
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 294, 330, 438
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 4 cut(s) 164, 307, 320, 528
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 467, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 73, 327, 516
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 233
MabI ACCWGGT 1 cut(s) 183
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 28, 164
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 8 cut(s) 64, 92, 191, 215, 247, 431, 451, 467
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 9 cut(s) 6, 143, 215, 326, 388, 391, 444, 489, 492
MroXI GAANNNNTTC 1 cut(s) 378
MspI CCGG 3 cut(s) 33, 260, 416
MspR9I CCNGG 4 cut(s) 42, 185, 260, 416
MvaI CCWGG 2 cut(s) 42, 185
MwoI GCNNNNNNNGC 1 cut(s) 42
NciI CCSGG 2 cut(s) 260, 416
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 140
NspV TTCGAA 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 378
Pfl23II CGTACG 1 cut(s) 427
PflFI GACNNNGTC 2 cut(s) 116, 517
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 1 cut(s) 248
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 40, 183
PspEI GGTNACC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 2 cut(s) 40, 183
PspLI CGTACG 1 cut(s) 427
PsyI GACNNNGTC 2 cut(s) 116, 517
RsaI GTAC 2 cut(s) 338, 429
RsaNI GTAC 2 cut(s) 337, 428
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 4 cut(s) 42, 185, 260, 416
SetI ASST 9 cut(s) 93, 159, 171, 186, 201, 354, 413, 436, 503
SexAI ACCWGGT 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 356
SspI AATATT 1 cut(s) 378
StyD4I CCNGG 4 cut(s) 40, 183, 258, 414
TaaI ACNGT 4 cut(s) 164, 307, 320, 528
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 347, 356, 512
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 310
Tth111I GACNNNGTC 2 cut(s) 116, 517
XmnI GAANNNNTTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.