Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010889

Physical Location & Seq

Genomic Coordinates Reverse (-)

18880575 .. 18881516

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0213500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGACGACGACGACTACTCCAGTACCGACTCGTCTTCCGATTCCAGTACTACTATTCCGGCAGCCTCCGCCGGAATCGTCATGCTCTCTCTCCCGGACAGTTTCGATGAGGATGCAGCCGAGGACAAGAGCAGCGCCGACCAGGACGTTTTCGAGACCCCGCCGGAGTCCGCGCTCGTCGTAACCTCCCAGGAGAAGACTCCCTTGCTCGATCTTGATCAGATCGGCGATGACGACGACGACGATGATCGTGATTTCGAGGGAGTTGGAGATATAGGAGATGGGAGCGGCGTCATCGTGGCCGTCGGTGGTTGCGGTGAGGAAGGTGACGGCGCTTTGGATTTGGGGCGGGATGCTGATCTGGTGACTTCGGAGGTGGAATCGGTGGAATTTAGGGTTTCAAAGAGGGATTTGTCGATGGAAGGGAGTTCGGAGGAGTCTTCGCCGCCGTCGAAGAAATTGAGGGTTTCGCAGCAGGAATCGGGGAAATCAGAGGAGGAATTGGAGACTGAGCGGCTCAGTCTGAGCAACCTCGGCTCTGATTCCGATCAAACTCTCGAAATTGCAGGGGATGATGCCAAATCAGTTGAGGAAAGCTCAGGAAAGAAGAATGCTGAGTATTCAGACAGCGAGAGTGAGAATTCTACTGAAGAGACTCAACAGGTTACTGAAGAAAGCGGTAGCCCATCCGGCGTGGAGTATTCCTATCAGGAAGGCGGTGAAATTGATTCCGGAGATTTGCGAGTGCTGCCTCTATCCTTCTTCTGCCCACCAGCGGACTCGAGTGAGAGGCATGCCGAGGAGGGGCATAGCTGGTCTAGTCTGTTGGAGATGTTGAAACGTGTGAGAGAAATAACTCGTCAAGACTGTAAAAATGAGGTTGATAAATGTAGCTTTTTGGAGATAGCTAAGCGTCGCGGCATGAATTTCCCTCAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0046939 GO:0046940 GO:0048589 GO:0048856 GO:0048869 GO:0050145 GO:0055086 GO:0060560 GO:0071704 GO:0071840 GO:0080186 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 ko03008 map00230 map01100 map01110 map01130 map03008

Pfam Domains

Protein Families

AAA_18

Protein Analysis

313

Amino Acids

33.72

Weight (kDa)

4.05

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60340
fragaria_vesca	FvH4_5g29720
malus_domestica	MD10G1078500.v1.1
prunus_persica	Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.8G100300_v2.0.a1
pyrus_communis	pycom10g06170
rosa_chinensis	RchiOBHm_Chr7g0223211
rosa_multiflora	Rmu_sc0002192.1_g000010 Rmu_sc0009034.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236020
rosa_rugosa	Rorug07G0213500 Rorug07G0213600.1 Rorug07G0213700
rosa_samantha	Rh7AG358800 Rh7BG346700 Rh7CG377200 Rh7DG354100
rosa_wichuraiana	Rw7G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	288, 514
AccII	CGCG	2 cut(s)	173, 918
AccIII	TCCGGA	1 cut(s)	731
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	389, 640, 925
AcuI	CTGAAG	2 cut(s)	669, 690
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	25, 49
AfiI	CCNNNNNNNGG	2 cut(s)	775, 804
AflIII	ACRYGT	1 cut(s)	841
AgsI	TTSAA	2 cut(s)	402, 838
AjnI	CCWGG	2 cut(s)	141, 189
AluBI	AGCT	5 cut(s)	597, 813, 894, 908, 937
AluI	AGCT	5 cut(s)	597, 813, 894, 908, 937
Alw26I	GTCTC	3 cut(s)	149, 500, 647
Ama87I	CYCGRG	1 cut(s)	781
Aor13HI	TCCGGA	1 cut(s)	731
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	5 cut(s)	62, 116, 132, 472, 748
ApoI	RAATTY	3 cut(s)	389, 640, 925
AspLEI	GCGC	3 cut(s)	137, 175, 335
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	4 cut(s)	329, 338, 376, 731
AvaI	CYCGRG	1 cut(s)	781
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BbsI	GAAGAC	3 cut(s)	27, 203, 432
BbvCI	CCTCAGC	1 cut(s)	933
BbvI	GCAGC	5 cut(s)	74, 128, 144, 484, 735
BccI	CCATC	3 cut(s)	275, 412, 694
BceAI	ACGGC	3 cut(s)	287, 346, 433
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	2 cut(s)	143, 191
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	149, 500, 647
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	1 cut(s)	938
BfoI	RGCGCY	2 cut(s)	138, 336
BglI	GCCNNNNNGGC	1 cut(s)	690
BisI	GCNGC	9 cut(s)	63, 117, 133, 289, 446, 473, 515, 749, 919
BlpI	GCTNAGC	1 cut(s)	909
BlsI	GCNGC	9 cut(s)	64, 118, 134, 290, 447, 474, 516, 750, 920
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	95, 143, 191
BmeT110I	CYCGRG	1 cut(s)	781
BmrFI	CCNGG	3 cut(s)	95, 143, 191
BmsI	GCATC	3 cut(s)	103, 343, 565
BpiI	GAAGAC	3 cut(s)	27, 203, 432
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	1 cut(s)	4
Bpu10I	CCTNAGC	2 cut(s)	598, 933
Bpu1102I	GCTNAGC	1 cut(s)	909
BpuMI	CCSGG	1 cut(s)	95
BsaBI	GATNNNNATC	3 cut(s)	216, 357, 546
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	120, 189, 532, 798
BsaWI	WCCGGW	1 cut(s)	731
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	775, 804
Bse1I	ACTGG	2 cut(s)	21, 45
Bse8I	GATNNNNATC	3 cut(s)	216, 357, 546
BseAI	TCCGGA	1 cut(s)	731
BseBI	CCWGG	2 cut(s)	143, 191
BseDI	CCNNGG	4 cut(s)	120, 189, 532, 798
BseGI	GGATG	4 cut(s)	118, 358, 577, 686
BseJI	GATNNNNATC	3 cut(s)	216, 357, 546
BseLI	CCNNNNNNNGG	2 cut(s)	775, 804
BseMII	CTCAG	5 cut(s)	501, 515, 532, 606, 612
BseNI	ACTGG	2 cut(s)	21, 45
BseRI	GAGGAG	3 cut(s)	449, 509, 815
BseXI	GCAGC	5 cut(s)	74, 128, 144, 484, 735
Bsh1236I	CGCG	2 cut(s)	173, 918
BshFI	GGCC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	781
BsiSI	CCGG	6 cut(s)	59, 72, 95, 164, 690, 732
BslI	CCNNNNNNNGG	2 cut(s)	775, 804
BsmAI	GTCTC	3 cut(s)	149, 500, 647
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	781
Bsp13I	TCCGGA	1 cut(s)	731
Bsp143I	GATC	6 cut(s)	211, 217, 222, 247, 358, 547
Bsp1720I	GCTNAGC	1 cut(s)	909
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	5 cut(s)	502, 516, 531, 607, 611
BspEI	TCCGGA	1 cut(s)	731
BspFNI	CGCG	2 cut(s)	173, 918
BspTNI	GGTCTC	1 cut(s)	149
BsrBI	CCGCTC	2 cut(s)	288, 514
BsrI	ACTGG	2 cut(s)	21, 45
BssECI	CCNNGG	4 cut(s)	120, 189, 532, 798
BssMI	GATC	6 cut(s)	211, 217, 222, 247, 358, 547
BssNI	GRCGYC	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	143, 191
Bst4CI	ACNGT	2 cut(s)	101, 869
Bst6I	CTCTTC	1 cut(s)	645
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	7 cut(s)	510, 518, 524, 598, 615, 909, 933
BstF5I	GGATG	4 cut(s)	118, 358, 577, 686
BstFNI	CGCG	2 cut(s)	173, 918
BstH2I	RGCGCY	2 cut(s)	138, 336
BstHHI	GCGC	3 cut(s)	137, 175, 335
BstKTI	GATC	6 cut(s)	214, 220, 225, 250, 361, 550
BstMAI	GTCTC	3 cut(s)	149, 500, 647
BstMBI	GATC	6 cut(s)	211, 217, 222, 247, 358, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 534, 690, 748
BstNI	CCWGG	2 cut(s)	143, 191
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	3 cut(s)	93, 141, 189
BstSFI	CTRYAG	1 cut(s)	938
BstUI	CGCG	2 cut(s)	173, 918
BstV1I	GCAGC	5 cut(s)	74, 128, 144, 484, 735
BstV2I	GAAGAC	3 cut(s)	27, 203, 432
BsuRI	GGCC	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	4 cut(s)	118, 358, 577, 686
Cac8I	GCNNGC	1 cut(s)	795
CfoI	GCGC	3 cut(s)	137, 175, 335
CseI	GACGC	2 cut(s)	280, 902
Csp6I	GTAC	2 cut(s)	24, 48
CviAII	CATG	3 cut(s)	82, 794, 922
CviQI	GTAC	2 cut(s)	24, 48
DdeI	CTNAG	7 cut(s)	510, 518, 524, 598, 615, 909, 933
DpnI	GATC	6 cut(s)	213, 219, 224, 249, 360, 549
DpnII	GATC	6 cut(s)	211, 217, 222, 247, 358, 547
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	669, 690
Eco88I	CYCGRG	1 cut(s)	781
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	2 cut(s)	141, 189
FaeI	CATG	3 cut(s)	85, 797, 925
FaiI	YATR	5 cut(s)	83, 275, 795, 810, 923
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	3 cut(s)	81, 793, 921
FauI	CCCGC	2 cut(s)	168, 342
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	9 cut(s)	63, 117, 133, 289, 446, 473, 515, 749, 919
FokI	GGATG	4 cut(s)	125, 365, 584, 673
Fsp4HI	GCNGC	9 cut(s)	63, 117, 133, 289, 446, 473, 515, 749, 919
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	3 cut(s)	136, 174, 334
GluI	GCNGC	9 cut(s)	63, 117, 133, 289, 446, 473, 515, 749, 919
GsuI	CTGGAG	1 cut(s)	4
HaeII	RGCGCY	2 cut(s)	138, 336
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	6 cut(s)	59, 72, 95, 164, 690, 732
HgaI	GACGC	2 cut(s)	280, 902
HhaI	GCGC	3 cut(s)	137, 175, 335
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	85, 797, 925
Hin6I	GCGC	3 cut(s)	135, 173, 333
HinP1I	GCGC	3 cut(s)	135, 173, 333
HpaII	CCGG	6 cut(s)	59, 72, 95, 164, 690, 732
HphI	GGTGA	4 cut(s)	329, 338, 376, 731
Hpy188I	TCNGA	9 cut(s)	40, 222, 373, 433, 493, 525, 541, 547, 625
Hpy188III	TCNNGA	8 cut(s)	154, 215, 251, 557, 600, 710, 732, 863
Hpy99I	CGWCG	9 cut(s)	11, 14, 182, 239, 242, 245, 308, 454, 918
HpyAV	CCTTC	4 cut(s)	317, 416, 707, 769
HpyCH4III	ACNGT	2 cut(s)	101, 869
HpyCH4IV	ACGT	2 cut(s)	147, 841
HpyCH4V	TGCA	2 cut(s)	116, 566
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 534, 690, 748
HpyF3I	CTNAG	7 cut(s)	510, 518, 524, 598, 615, 909, 933
HpySE526I	ACGT	2 cut(s)	147, 841
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	85, 797, 925
HspAI	GCGC	3 cut(s)	135, 173, 333
Kpn2I	TCCGGA	1 cut(s)	731
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	6 cut(s)	211, 217, 222, 247, 358, 547
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	5 cut(s)	74, 128, 144, 484, 735
LweI	GCATC	3 cut(s)	103, 343, 565
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	2 cut(s)	147, 841
MaeIII	GTNAC	4 cut(s)	181, 326, 364, 664
MalI	GATC	6 cut(s)	213, 219, 224, 249, 360, 549
MbiI	CCGCTC	2 cut(s)	288, 514
MboI	GATC	6 cut(s)	211, 217, 222, 247, 358, 547
MboII	GAAGA	8 cut(s)	27, 208, 432, 466, 619, 662, 683, 754
MluCI	AATT	7 cut(s)	389, 458, 500, 561, 640, 723, 925
MlyI	GAGTC	6 cut(s)	23, 176, 193, 446, 649, 773
MmeI	TCCRAC	2 cut(s)	247, 807
MroI	TCCGGA	1 cut(s)	731
MspA1I	CMGCKG	2 cut(s)	776, 937
MspI	CCGG	6 cut(s)	59, 72, 95, 164, 690, 732
MspR9I	CCNGG	3 cut(s)	95, 143, 191
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	143, 191
MvnI	CGCG	2 cut(s)	173, 918
MwoI	GCNNNNNNNGC	4 cut(s)	68, 534, 690, 748
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	6 cut(s)	211, 217, 222, 247, 358, 547
NlaIII	CATG	3 cut(s)	85, 797, 925
NmeAIII	GCCGAG	3 cut(s)	145, 513, 823
NmuCI	GTSAC	2 cut(s)	326, 364
NspI	RCATGY	1 cut(s)	797
PaeI	GCATGC	1 cut(s)	797
PaeR7I	CTCGAG	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	3 cut(s)	231, 240, 449
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	6 cut(s)	41, 75, 380, 479, 542, 728
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	9 cut(s)	64, 118, 134, 290, 447, 474, 516, 750, 920
PleI	GAGTC	6 cut(s)	23, 175, 193, 445, 649, 773
PpsI	GAGTC	6 cut(s)	23, 175, 193, 445, 649, 773
Psp6I	CCWGG	2 cut(s)	141, 189
PspGI	CCWGG	2 cut(s)	141, 189
PspXI	VCTCGAGB	1 cut(s)	781
PvuII	CAGCTG	1 cut(s)	937
RsaI	GTAC	2 cut(s)	25, 49
RsaNI	GTAC	2 cut(s)	24, 48
SatI	GCNGC	9 cut(s)	63, 117, 133, 289, 446, 473, 515, 749, 919
Sau3AI	GATC	6 cut(s)	211, 217, 222, 247, 358, 547
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	6 cut(s)	23, 176, 193, 446, 649, 773
ScrFI	CCNGG	3 cut(s)	95, 143, 191
SfaNI	GCATC	3 cut(s)	103, 343, 565
SfcI	CTRYAG	1 cut(s)	938
Sfr274I	CTCGAG	1 cut(s)	781
SlaI	CTCGAG	1 cut(s)	781
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SphI	GCATGC	1 cut(s)	797
Sse9I	AATT	7 cut(s)	389, 458, 500, 561, 640, 723, 925
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	3 cut(s)	93, 141, 189
TaaI	ACNGT	2 cut(s)	101, 869
TaiI	ACGT	2 cut(s)	150, 844
TaqI	TCGA	8 cut(s)	105, 153, 210, 258, 416, 452, 558, 782
TasI	AATT	7 cut(s)	389, 458, 500, 561, 640, 723, 925
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	4 cut(s)	291, 448, 517, 921
TfiI	GAWTC	6 cut(s)	41, 75, 380, 479, 542, 728
TseFI	GTSAC	2 cut(s)	326, 364
TseI	GCWGC	5 cut(s)	62, 116, 132, 472, 748
Tsp45I	GTSAC	2 cut(s)	326, 364
TspDTI	ATGAA	1 cut(s)	938
XapI	RAATTY	3 cut(s)	389, 640, 925
XceI	RCATGY	1 cut(s)	797
XhoI	CTCGAG	1 cut(s)	781
XspI	CTAG	1 cut(s)	819
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.