Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010889

Physical Location & Seq

Genomic Coordinates Reverse (-)

46073459 .. 46074071

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG358800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAAGGCAGCGGCCGAATATATTGGTGACTGGCACACCCGGAACAGGGAAGACAACAATGTCGTCTGCCTTAGCAGAAGAGACACAGCTTCGCCATATCAACATAGGTGAGTTGGTCAAGGCAAAGAGCCTCCATGATGGCTGGGACAATGAGCTTGACTGTTACGTCATTAATGAAGACCTGGTGTGCGACGAGCTTGAAGATATGATGGAAGAAGGAGGGAACATAGTGGACTACCACGGTTGCGATTTCTTCCCTGAGAGATGGTTTGATCTTGTGGTTGTGCTTCAGACTGACAACACTGTCTTGTATGACCGTTTGACTCAAAGAGGGTATTCCGGCTCTAAACTTTCCAACAATGTTGAATGTGAAATATTTCAAACTCTGCTTGAGGAGGCAAAAGAGAGCTACCCGGAAAATATTGTACAACCTCTGAAGAGTGATAGCATTGAAGACATTTCAACGAATCTCGCTTCTTTGACTGATTGGGTGAGGAGGTGGCAACCATCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0046939 GO:0046940 GO:0048589 GO:0048856 GO:0048869 GO:0050145 GO:0055086 GO:0060560 GO:0071704 GO:0071840 GO:0080186 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 ko03008 map00230 map01100 map01110 map01130 map03008

Pfam Domains

Protein Families

AAA_18

Protein Analysis

172

Amino Acids

19.56

Weight (kDa)

4.36

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	8 - 128	3.7e-34	AAA domain
AAA_17	PF13207	11 - 81	6.2e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60340
fragaria_vesca	FvH4_5g29720
malus_domestica	MD10G1078500.v1.1
prunus_persica	Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.8G100300_v2.0.a1
pyrus_communis	pycom10g06170
rosa_chinensis	RchiOBHm_Chr7g0223211
rosa_multiflora	Rmu_sc0002192.1_g000010 Rmu_sc0009034.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236020
rosa_rugosa	Rorug07G0213500 Rorug07G0213600.1 Rorug07G0213700
rosa_samantha	Rh7AG358800 Rh7BG346700 Rh7CG377200 Rh7DG354100
rosa_wichuraiana	Rw7G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
AciI	CCGC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	14
AcuI	CTGAAG	2 cut(s)	275, 458
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	47, 48
AgsI	TTSAA	5 cut(s)	203, 368, 383, 455, 465
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	91, 157, 199, 411
AluI	AGCT	4 cut(s)	91, 157, 199, 411
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	10
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuC2I	CCSGG	2 cut(s)	42, 416
AsuHPI	GGTGA	3 cut(s)	40, 122, 505
BbsI	GAAGAC	3 cut(s)	59, 186, 462
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	4 cut(s)	134, 205, 261, 517
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	2 cut(s)	42, 416
BcoDI	GTCTC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	11, 14
BlsI	GCNGC	2 cut(s)	12, 15
Bme1390I	CCNGG	3 cut(s)	42, 185, 416
BmrFI	CCNGG	3 cut(s)	42, 185, 416
BpiI	GAAGAC	3 cut(s)	59, 186, 462
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	42, 416
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 48
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	47, 48
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	410, 511
BseX3I	CGGCCG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	16
BsiEI	CGRYCG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	42, 342, 416
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	47, 48
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	4 cut(s)	164, 245, 307, 320
Bst6I	CTCTTC	2 cut(s)	75, 434
BstAUI	TGTACA	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	73, 261, 516
BstDSI	CCRYGG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	3 cut(s)	40, 183, 414
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	3 cut(s)	59, 186, 462
BstZI	CGGCCG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	8 cut(s)	16, 91, 132, 144, 157, 199, 345, 411
CviKI_1	RGCY	8 cut(s)	16, 91, 132, 144, 157, 199, 345, 411
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	3 cut(s)	73, 261, 516
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DrdI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
DseDI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
EaeI	YGGCCR	1 cut(s)	14
EagI	CGGCCG	1 cut(s)	14
Eam1104I	CTCTTC	2 cut(s)	75, 434
EarI	CTCTTC	2 cut(s)	75, 434
EclXI	CGGCCG	1 cut(s)	14
Eco52I	CGGCCG	1 cut(s)	14
Eco57I	CTGAAG	2 cut(s)	275, 458
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	140
FaiI	YATR	7 cut(s)	23, 99, 107, 138, 209, 230, 315
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	11, 14
Fsp4HI	GCNGC	2 cut(s)	11, 14
GluI	GCNGC	2 cut(s)	11, 14
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	3 cut(s)	42, 342, 416
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	2 cut(s)	325, 469
HpaII	CCGG	3 cut(s)	42, 342, 416
HphI	GGTGA	3 cut(s)	40, 122, 505
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	294, 438
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	4 cut(s)	164, 245, 307, 320
HpyCH4IV	ACGT	1 cut(s)	168
HpyF3I	CTNAG	3 cut(s)	73, 261, 516
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	18, 33, 55, 130, 170, 197, 273, 355, 429
Lsp1109I	GCAGC	1 cut(s)	22
MabI	ACCWGGT	1 cut(s)	183
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	28, 164
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	8 cut(s)	64, 92, 191, 215, 227, 247, 451, 467
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	8 cut(s)	143, 215, 326, 388, 391, 444, 489, 492
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	3 cut(s)	42, 342, 416
MspR9I	CCNGG	3 cut(s)	42, 185, 416
MvaI	CCWGG	1 cut(s)	185
NciI	CCSGG	2 cut(s)	42, 416
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	12, 15
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	183
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	11, 14
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	3 cut(s)	42, 185, 416
SetI	ASST	9 cut(s)	93, 112, 159, 171, 186, 201, 413, 436, 503
SexAI	ACCWGGT	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SsiI	CCGC	1 cut(s)	13
SspI	AATATT	2 cut(s)	378, 424
StyD4I	CCNGG	3 cut(s)	40, 183, 414
TaaI	ACNGT	4 cut(s)	164, 245, 307, 320
TaiI	ACGT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.