Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010889

Physical Location & Seq

Genomic Coordinates Forward (+)

13169093 .. 13170586

Gene Structure 1494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G100300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTGAGGAAGAGGCCAAACATATTGGTGACGGGCACACCAGGAACGGGGAAGACAACAACATCGTCTGCCTTAGCAGAGGCAACACAGCTCCACCACATCAACGTCGGTGATTTGGTGAAGGCCAAGAATCTCCATGATGGGTGGGATGATGAGCTAGACTGTTACATCATCAATGAAGACCTGGTATGCGACGAGCTTGAGGATACCATGGAAGAAGGAGGGAACATTGTGGACTACCATGGTTGCGATTTCTTCCCTGAGAGATGGTTTGATCTTGTGGTTGTGCTCCAAACTGACAACACCGTCTTGTATGACCGCTTGACTCGAAGAGGATATTCGGAGTCAAAGCTCTCCAACAATATTGAATGTGAAATATTTCAAACTTTGCTTGAGGAGGCAAAAGAGAGCTACCCAGAAGATATCGTGCTTCCCTTAAAGAGTGATAGCATCCAAGACATTTCGACTAATCTTTCTACTTTGGCAGAATGGGTCCGGAGGTGGCAACCTTCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0046939 GO:0046940 GO:0048589 GO:0048856 GO:0048869 GO:0050145 GO:0055086 GO:0060560 GO:0071704 GO:0071840 GO:0080186 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 ko03008 map00230 map01100 map01110 map01130 map03008

Pfam Domains

Protein Families

AAA_18

Protein Analysis

173

Amino Acids

19.58

Weight (kDa)

4.42

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60340
fragaria_vesca	FvH4_5g29720
malus_domestica	MD10G1078500.v1.1
prunus_persica	Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.1G205700_v2.0.a1 Prupe.8G100300_v2.0.a1
pyrus_communis	pycom10g06170
rosa_chinensis	RchiOBHm_Chr7g0223211
rosa_multiflora	Rmu_sc0002192.1_g000010 Rmu_sc0009034.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236020
rosa_rugosa	Rorug07G0213500 Rorug07G0213600.1 Rorug07G0213700
rosa_samantha	Rh7AG358800 Rh7BG346700 Rh7CG377200 Rh7DG354100
rosa_wichuraiana	Rw7G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccIII	TCCGGA	1 cut(s)	495
AciI	CCGC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	368, 383, 513
AjnI	CCWGG	2 cut(s)	40, 183
AluBI	AGCT	5 cut(s)	91, 157, 199, 352, 411
AluI	AGCT	5 cut(s)	91, 157, 199, 352, 411
Alw21I	GWGCWC	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	495
AoxI	GGCC	2 cut(s)	14, 123
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	4 cut(s)	16, 40, 122, 130
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	59, 186
Bbv12I	GWGCWC	1 cut(s)	291
BccI	CCATC	2 cut(s)	134, 261
BciT130I	CCWGG	2 cut(s)	42, 185
BciVI	GTATCC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	42, 185
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	2 cut(s)	42, 185
BmsI	GCATC	1 cut(s)	459
BpiI	GAAGAC	2 cut(s)	59, 186
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	2 cut(s)	221, 413
BsaJI	CCNNGG	2 cut(s)	210, 241
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	42, 185
BseDI	CCNNGG	2 cut(s)	210, 241
BseGI	GGATG	2 cut(s)	154, 450
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	16, 125
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	2 cut(s)	16, 125
Bsp1286I	GDGCHC	2 cut(s)	38, 291
Bsp13I	TCCGGA	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	274
Bsp19I	CCATGG	2 cut(s)	210, 241
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	2 cut(s)	16, 125
BspCNI	CTCAG	1 cut(s)	253
BspEI	TCCGGA	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	210, 241
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	2 cut(s)	210, 241
Bst2UI	CCWGG	2 cut(s)	42, 185
Bst4CI	ACNGT	2 cut(s)	164, 307
Bst6I	CTCTTC	2 cut(s)	5, 325
BstDEI	CTNAG	3 cut(s)	73, 261, 516
BstDSI	CCRYGG	2 cut(s)	210, 241
BstF5I	GGATG	2 cut(s)	154, 450
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	42, 185
BstSCI	CCNGG	2 cut(s)	40, 183
BstSLI	GKGCMC	1 cut(s)	38
BstV2I	GAAGAC	2 cut(s)	59, 186
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	16, 125
BtgI	CCRYGG	2 cut(s)	210, 241
BtsCI	GGATG	2 cut(s)	154, 450
Cfr13I	GGNCC	1 cut(s)	493
CsiI	ACCWGGT	1 cut(s)	183
CviAII	CATG	3 cut(s)	137, 211, 242
CviJI	RGCY	7 cut(s)	16, 91, 125, 157, 199, 352, 411
CviKI_1	RGCY	7 cut(s)	16, 91, 125, 157, 199, 352, 411
DdeI	CTNAG	3 cut(s)	73, 261, 516
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
Eam1104I	CTCTTC	2 cut(s)	5, 325
EarI	CTCTTC	2 cut(s)	5, 325
Eco130I	CCWWGG	2 cut(s)	210, 241
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	40, 183
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	210, 241
ErhI	CCWWGG	2 cut(s)	210, 241
FaeI	CATG	3 cut(s)	140, 214, 245
FaiI	YATR	6 cut(s)	23, 138, 190, 212, 243, 315
FatI	CATG	3 cut(s)	136, 210, 241
FokI	GGATG	2 cut(s)	161, 437
FspBI	CTAG	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	16, 125
HapII	CCGG	1 cut(s)	496
Hin1II	CATG	3 cut(s)	140, 214, 245
HinfI	GANTC	3 cut(s)	130, 325, 344
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	4 cut(s)	16, 40, 122, 130
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	496
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	2 cut(s)	110, 197
HpyAV	CCTTC	3 cut(s)	115, 212, 519
HpyCH4III	ACNGT	2 cut(s)	164, 307
HpyCH4IV	ACGT	1 cut(s)	105
HpyF3I	CTNAG	3 cut(s)	73, 261, 516
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	140, 214, 245
Kpn2I	TCCGGA	1 cut(s)	495
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	96, 294
LpnPI	CCDG	7 cut(s)	27, 54, 170, 197, 273, 429, 509
LweI	GCATC	1 cut(s)	459
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	28, 164
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	7 cut(s)	22, 64, 191, 227, 247, 342, 431
MhlI	GDGCHC	2 cut(s)	38, 291
MlyI	GAGTC	2 cut(s)	319, 353
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	8 cut(s)	6, 73, 196, 215, 326, 388, 391, 492
MroI	TCCGGA	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	2 cut(s)	42, 185
MvaI	CCWGG	2 cut(s)	42, 185
NcoI	CCATGG	2 cut(s)	210, 241
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	3 cut(s)	140, 214, 245
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	130
PleI	GAGTC	2 cut(s)	319, 352
PpsI	GAGTC	2 cut(s)	319, 352
Psp6I	CCWGG	2 cut(s)	40, 183
PspGI	CCWGG	2 cut(s)	40, 183
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	437
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	319, 353
ScrFI	CCNGG	2 cut(s)	42, 185
SduI	GDGCHC	2 cut(s)	38, 291
SetI	ASST	9 cut(s)	93, 108, 159, 186, 201, 354, 413, 503, 511
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	459
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	200, 392
SmoI	CTYRAG	2 cut(s)	200, 392
SsiI	CCGC	1 cut(s)	319
SspI	AATATT	2 cut(s)	364, 378
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	40, 183
StyI	CCWWGG	2 cut(s)	210, 241
TaaI	ACNGT	2 cut(s)	164, 307
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	328, 464
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.