Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010318

Physical Location & Seq

Genomic Coordinates Reverse (-)

24473202 .. 24474524

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACGACGACCGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGAGAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAATTACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGACCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGAAGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTGAAGAAGAAGAAGTAGGAGAAGTAGAAGAAATGGAAGAGGTAGAAGAGGTTGAAGAAGAAGTAGATGAAGTAGGAGAAGTAGAAGAAGAACAAGAAGAGGTCATAGATTCAGCTTCTGCAGAGATACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCGAGAAACCAGATTTTCCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

4.05

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60840 AT5G60840
fragaria_vesca	FvH4_5g13250 FvH4_5g13250
malus_domestica	MD06G1206900.v1.1 MD14G1217500.v1.1
prunus_persica	Prupe.5G211300_v2.0.a1 Prupe.5G211300_v2.0.a1
pyrus_communis	pycom06g18470 pycom14g18020
rosa_chinensis	RchiOBHm_Chr7g0183911
rosa_laevigata	RLG00000005011
rosa_multiflora	Rmu_sc0004712.1_g000031 Rmu_sc0007533.1_g000007
rosa_roxburghii	Rroxscaffold_3G00270080
rosa_rugosa	Rorug06G0461300
rosa_samantha	Rh7AG062300 Rh7BG062500 Rh7CG063900 Rh7DG062400
rosa_wichuraiana	Rw7G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	7 cut(s)	38, 44, 102, 116, 119, 122, 401
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	19, 571
AgsI	TTSAA	3 cut(s)	345, 419, 470
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	246, 254, 530
AluI	AGCT	3 cut(s)	246, 254, 530
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	305
Alw44I	GTGCAC	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	533
ApaLI	GTGCAC	1 cut(s)	360
ApoI	RAATTY	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	51, 341, 563
BaeGI	GKGCMC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	364
BccI	CCATC	3 cut(s)	133, 202, 320
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	577
BisI	GCNGC	2 cut(s)	119, 122
BlsI	GCNGC	2 cut(s)	120, 123
Bme1390I	CCNGG	2 cut(s)	78, 380
BmrFI	CCNGG	2 cut(s)	78, 380
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	380
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 558, 588
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	304, 388
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	96, 323
BseSI	GKGCMC	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	29, 380
BsmAI	GTCTC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	7 cut(s)	38, 44, 102, 116, 119, 122, 401
BspCNI	CTCAG	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	104
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	4 cut(s)	216, 447, 456, 507
BstDEI	CTNAG	2 cut(s)	231, 577
BstF5I	GGATG	2 cut(s)	304, 388
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	76, 378
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	304, 388
BveI	ACCTGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	18, 570
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	4 cut(s)	76, 246, 254, 530
CviKI_1	RGCY	4 cut(s)	76, 246, 254, 530
CviQI	GTAC	2 cut(s)	18, 570
DdeI	CTNAG	2 cut(s)	231, 577
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	4 cut(s)	216, 447, 456, 507
EarI	CTCTTC	4 cut(s)	216, 447, 456, 507
EciI	GGCGGA	2 cut(s)	27, 105
Eco57I	CTGAAG	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	413
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	228, 275, 306, 372, 521
FatI	CATG	1 cut(s)	273
FauI	CCCGC	2 cut(s)	109, 408
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	2 cut(s)	119, 122
FokI	GGATG	2 cut(s)	311, 395
Fsp4HI	GCNGC	2 cut(s)	119, 122
GluI	GCNGC	2 cut(s)	119, 122
HapII	CCGG	2 cut(s)	29, 380
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	2 cut(s)	34, 524
HpaII	CCGG	2 cut(s)	29, 380
HphI	GGTGA	3 cut(s)	51, 341, 563
Hpy166II	GTNNAC	3 cut(s)	18, 362, 397
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	3 cut(s)	18, 362, 397
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	4 cut(s)	362, 374, 411, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	231, 577
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	2 cut(s)	52, 109
LpnPI	CCDG	7 cut(s)	32, 42, 53, 63, 90, 197, 393
LweI	GCATC	1 cut(s)	373
MaeII	ACGT	1 cut(s)	364
MalI	GATC	1 cut(s)	174
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	172
MfeI	CAATTG	2 cut(s)	176, 321
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	4 cut(s)	129, 162, 176, 321
MnlI	CCTC	9 cut(s)	51, 117, 121, 301, 448, 457, 508, 560, 574
Mph1103I	ATGCAT	1 cut(s)	413
MseI	TTAA	1 cut(s)	167
MspI	CCGG	2 cut(s)	29, 380
MspR9I	CCNGG	2 cut(s)	78, 380
MunI	CAATTG	2 cut(s)	176, 321
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	34, 524
PkrI	GCNGC	2 cut(s)	120, 123
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	533
RsaI	GTAC	2 cut(s)	19, 571
RsaNI	GTAC	2 cut(s)	18, 570
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	2 cut(s)	119, 122
Sau3AI	GATC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	78, 380
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	9 cut(s)	51, 248, 256, 367, 459, 468, 519, 532, 571
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	534
Sse9I	AATT	4 cut(s)	129, 162, 176, 321
SsiI	CCGC	7 cut(s)	38, 44, 102, 116, 119, 122, 401
StyD4I	CCNGG	2 cut(s)	76, 378
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	241
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	4 cut(s)	129, 162, 176, 321
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	2 cut(s)	121, 124
TfiI	GAWTC	2 cut(s)	34, 524
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	201, 315, 498
TspGWI	ACGGA	1 cut(s)	174
VneI	GTGCAC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.