Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010318

Physical Location & Seq

Genomic Coordinates Reverse (-)

30098058 .. 30101877

Gene Structure 3820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1217500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGAGCTTGCCGTCTCCGGCGTCTCCGGCGTCGCCATCCTCCTCTGCTTCCAGCTCCGACAACTCCGCCACTCGACCCATCTCTCACTCTCCTCCAAATCCACAGGCTGAAGCTGGAGCCAACAATGGAGTTCTGGATGCCGAGGAGACGAAGCCTGGTATTGTTTCTGCATATTATGATGACCTCCATAGCGCAAACCACATTGAGAAGTTCAAGAAATATGAAGTGGACTACAGTCGTTGGTTGACTGCAAAATACTTCACAAAGACGAACCTATATGGAGGCAACATCTTCGATGAGAGTTTGACAATACGTGATCAGGTTATAAAGTCGAGCAGATGGCCTTGCACCCTCTCATATGCAGACCCGGTCCAGGGTTTTGAAGAACAGAGCAACTTCTTTTCGACTTTTACCACTACAGCAGAAACCTCGCTTAACATCTCAAATGGGAAGCATCCAGTAAAGAAAAGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.29

Weight (kDa)

5.77

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60840 AT5G60840
fragaria_vesca	FvH4_5g13250 FvH4_5g13250
malus_domestica	MD06G1206900.v1.1 MD14G1217500.v1.1
prunus_persica	Prupe.5G211300_v2.0.a1 Prupe.5G211300_v2.0.a1
pyrus_communis	pycom06g18470 pycom14g18020
rosa_chinensis	RchiOBHm_Chr7g0183911
rosa_laevigata	RLG00000005011
rosa_multiflora	Rmu_sc0004712.1_g000031 Rmu_sc0007533.1_g000007
rosa_roxburghii	Rroxscaffold_3G00270080
rosa_rugosa	Rorug06G0461300
rosa_samantha	Rh7AG062300 Rh7BG062500 Rh7CG063900 Rh7DG062400
rosa_wichuraiana	Rw7G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AciI	CCGC	2 cut(s)	69, 474
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	2 cut(s)	23, 32
AfiI	CCNNNNNNNGG	2 cut(s)	376, 377
AgsI	TTSAA	2 cut(s)	217, 386
AjnI	CCWGG	2 cut(s)	157, 375
AluBI	AGCT	3 cut(s)	9, 57, 116
AluI	AGCT	3 cut(s)	9, 57, 116
Alw26I	GTCTC	3 cut(s)	21, 30, 143
AoxI	GGCC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	373
BccI	CCATC	3 cut(s)	46, 89, 336
BcgI	CGANNNNNNTGC	4 cut(s)	277, 311, 414, 448
BciT130I	CCWGG	2 cut(s)	159, 377
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	21, 30, 143
BfmI	CTRYAG	2 cut(s)	235, 420
Bme1390I	CCNGG	3 cut(s)	159, 371, 377
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	3 cut(s)	159, 371, 377
BmsI	GCATC	2 cut(s)	130, 466
BoxI	GACNNNNGTC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	371
BsaAI	YACGTR	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	23, 32
BsaJI	CCNNGG	2 cut(s)	144, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 377
Bse1I	ACTGG	1 cut(s)	461
BseBI	CCWGG	2 cut(s)	159, 377
BseDI	CCNNGG	2 cut(s)	144, 376
BseGI	GGATG	3 cut(s)	38, 145, 457
BseLI	CCNNNNNNNGG	2 cut(s)	376, 377
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	3 cut(s)	34, 84, 161
BshFI	GGCC	1 cut(s)	346
BsiSI	CCGG	3 cut(s)	20, 29, 371
BslI	CCNNNNNNNGG	2 cut(s)	376, 377
BsmAI	GTCTC	3 cut(s)	21, 30, 143
BsmBI	CGTCTC	3 cut(s)	21, 30, 143
BsnI	GGCC	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	2 cut(s)	69, 474
BspANI	GGCC	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	144, 376
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	2 cut(s)	23, 32
Bst2UI	CCWGG	2 cut(s)	159, 377
Bst4CI	ACNGT	1 cut(s)	239
BstACI	GRCGYC	2 cut(s)	23, 32
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	7, 11
BstF5I	GGATG	3 cut(s)	38, 145, 457
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	3 cut(s)	21, 30, 143
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	2 cut(s)	159, 377
BstPAI	GACNNNNGTC	1 cut(s)	237
BstSCI	CCNGG	3 cut(s)	157, 369, 375
BstSFI	CTRYAG	2 cut(s)	235, 420
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	38, 145, 457
Cac8I	GCNNGC	2 cut(s)	7, 11
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	373
CseI	GACGC	2 cut(s)	12, 21
CviJI	RGCY	7 cut(s)	9, 57, 110, 116, 122, 157, 346
CviKI_1	RGCY	7 cut(s)	9, 57, 110, 116, 122, 157, 346
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	157, 375
Esp3I	CGTCTC	3 cut(s)	21, 30, 143
FaiI	YATR	9 cut(s)	175, 180, 192, 225, 280, 282, 329, 361, 363
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	319
FokI	GGATG	3 cut(s)	25, 152, 444
GlaI	GCGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	3 cut(s)	20, 29, 371
HgaI	GACGC	2 cut(s)	12, 21
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	2 cut(s)	23, 32
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HpaII	CCGG	3 cut(s)	20, 29, 371
Hpy166II	GTNNAC	2 cut(s)	232, 249
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	137, 217
Hpy8I	GTNNAC	2 cut(s)	232, 249
Hpy99I	CGWCG	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	4 cut(s)	173, 254, 351, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	2 cut(s)	23, 32
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	62, 119
LweI	GCATC	2 cut(s)	130, 466
MaeII	ACGT	1 cut(s)	316
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	286, 398
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	52, 55, 105, 139, 197, 278, 365, 442
MseI	TTAA	1 cut(s)	438
MspI	CCGG	3 cut(s)	20, 29, 371
MspR9I	CCNGG	3 cut(s)	159, 371, 377
MvaI	CCWGG	2 cut(s)	159, 377
MwoI	GCNNNNNNNGC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	371
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	371
Ppu21I	YACGTR	1 cut(s)	317
PshAI	GACNNNNGTC	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	157, 375
PspGI	CCWGG	2 cut(s)	157, 375
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	438
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	3 cut(s)	159, 371, 377
SetI	ASST	8 cut(s)	11, 59, 118, 189, 279, 319, 327, 434
SfaNI	GCATC	2 cut(s)	130, 466
SfcI	CTRYAG	2 cut(s)	235, 420
SinI	GGWCC	1 cut(s)	373
SsiI	CCGC	2 cut(s)	69, 474
StyD4I	CCNGG	3 cut(s)	157, 369, 375
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	4 cut(s)	76, 297, 335, 407
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TspDTI	ATGAA	1 cut(s)	240
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.