Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010318

Physical Location & Seq

Genomic Coordinates Reverse (-)

4336736 .. 4340442

Gene Structure 3707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG062300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATTTTTCTTTTTCTATTTTGTTTGCATAAATTGAAGCAGCAGCTAACTTTAGTTGTCTCGTTCTTGTCTAAACTCCAAATCCACGATTCTTCTTCTTCATTTTTGTTGAGAGGCCTGGTTTTTGTTAGCAGCTCAAATTCTAGAATGGCCAGTCGGCCGTCTCCGTCGTCTCCACCGTCCTCTGCTTCCAACTCCGACCACTCCCCCACTCAACCCCCCTCTCTCACTCCCACAAATCCACACGCACAGGCCGAGGCTGGAATCAACAATGGGGTTCTCAATGTCGACGAGAAAAAGCCTGCATCTTTTGATGAGCTTCATACCGCAGACCACATCCAGAAGTTCAAGAAGTATGAAGCTGACTACACTCGTTGGTTGACTGCAAAATACTTCTCCAAGAAAACTCTTTATGGAGGCAACATATTTGATGAAAATATGATAATACAGGATGAGGTTATAAAGTCAAGCAGGTGGCCTTGTACCAGGTCATATGCAGACCCAGTGCAGGGCTTTGAAGACCAGACCAGCAGCTGCTCACCTTCTACAACTACAGCCGAAACCTCACCTAACTTATCAAATGGGAAGCATCCAGTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.17

Weight (kDa)

8.4

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60840 AT5G60840
fragaria_vesca	FvH4_5g13250 FvH4_5g13250
malus_domestica	MD06G1206900.v1.1 MD14G1217500.v1.1
prunus_persica	Prupe.5G211300_v2.0.a1 Prupe.5G211300_v2.0.a1
pyrus_communis	pycom06g18470 pycom14g18020
rosa_chinensis	RchiOBHm_Chr7g0183911
rosa_laevigata	RLG00000005011
rosa_multiflora	Rmu_sc0004712.1_g000031 Rmu_sc0007533.1_g000007
rosa_roxburghii	Rroxscaffold_3G00270080
rosa_rugosa	Rorug06G0461300
rosa_samantha	Rh7AG062300 Rh7BG062500 Rh7CG063900 Rh7DG062400
rosa_wichuraiana	Rw7G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AarI	CACCTGC	1 cut(s)	462
Acc36I	ACCTGC	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	1 cut(s)	327
AcoI	YGGCCR	2 cut(s)	150, 158
AcsI	RAATTY	1 cut(s)	139
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	2 cut(s)	508, 509
AgsI	TTSAA	3 cut(s)	37, 349, 518
AjnI	CCWGG	2 cut(s)	117, 485
AluBI	AGCT	5 cut(s)	46, 135, 319, 362, 534
AluI	AGCT	5 cut(s)	46, 135, 319, 362, 534
Alw26I	GTCTC	3 cut(s)	64, 168, 177
AlwNI	CAGNNNCTG	1 cut(s)	534
AoxI	GGCC	5 cut(s)	115, 150, 158, 252, 476
ApeKI	GCWGC	5 cut(s)	40, 43, 132, 531, 534
ApoI	RAATTY	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	531, 558
BalI	TGGCCA	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	525
BbvI	GCAGC	5 cut(s)	52, 55, 144, 521, 543
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	119, 487
BcoDI	GTCTC	3 cut(s)	64, 168, 177
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	462
BisI	GCNGC	5 cut(s)	41, 44, 133, 532, 535
BlsI	GCNGC	5 cut(s)	42, 45, 134, 533, 536
Bme1390I	CCNGG	2 cut(s)	119, 487
BmrFI	CCNGG	2 cut(s)	119, 487
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	314, 598
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 509
Bse1I	ACTGG	3 cut(s)	153, 503, 593
BseBI	CCWGG	2 cut(s)	119, 487
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	3 cut(s)	336, 457, 589
BseLI	CCNNNNNNNGG	2 cut(s)	508, 509
BseNI	ACTGG	3 cut(s)	153, 503, 593
BseX3I	CGGCCG	1 cut(s)	158
BseXI	GCAGC	5 cut(s)	52, 55, 144, 521, 543
BsgI	GTGCAG	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	5 cut(s)	117, 152, 160, 254, 478
BsiEI	CGRYCG	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	508, 509
BsmAI	GTCTC	3 cut(s)	64, 168, 177
BsmBI	CGTCTC	2 cut(s)	168, 177
BsnI	GGCC	5 cut(s)	117, 152, 160, 254, 478
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	5 cut(s)	117, 152, 160, 254, 478
BspMI	ACCTGC	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	153, 503, 593
BssECI	CCNNGG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	119, 487
Bst4CI	ACNGT	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	336, 457, 589
BstMAI	GTCTC	3 cut(s)	64, 168, 177
BstMCI	CGRYCG	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	119, 487
BstSCI	CCNGG	2 cut(s)	117, 485
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	5 cut(s)	52, 55, 144, 521, 543
BstV2I	GAAGAC	1 cut(s)	525
BstZI	CGGCCG	1 cut(s)	158
BsuRI	GGCC	5 cut(s)	117, 152, 160, 254, 478
BtsCI	GGATG	3 cut(s)	336, 457, 589
BtsIMutI	CAGTG	1 cut(s)	510
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	303
CaiI	CAGNNNCTG	1 cut(s)	534
CsiI	ACCWGGT	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	483
CviQI	GTAC	1 cut(s)	483
EaeI	YGGCCR	2 cut(s)	150, 158
EagI	CGGCCG	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	158
Eco147I	AGGCCT	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	117, 485
Esp3I	CGTCTC	2 cut(s)	168, 177
FaiI	YATR	9 cut(s)	30, 324, 357, 414, 425, 440, 461, 493, 495
FauNDI	CATATG	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	5 cut(s)	41, 44, 133, 532, 535
FokI	GGATG	3 cut(s)	323, 464, 576
Fsp4HI	GCNGC	5 cut(s)	41, 44, 133, 532, 535
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	5 cut(s)	41, 44, 133, 532, 535
HaeIII	GGCC	5 cut(s)	117, 152, 160, 254, 478
HincII	GTYRAC	2 cut(s)	289, 381
HindII	GTYRAC	2 cut(s)	289, 381
HinfI	GANTC	2 cut(s)	89, 264
HphI	GGTGA	2 cut(s)	531, 558
Hpy166II	GTNNAC	2 cut(s)	289, 381
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	3 cut(s)	144, 340, 349
Hpy8I	GTNNAC	2 cut(s)	289, 381
Hpy99I	CGWCG	2 cut(s)	172, 293
HpyAV	CCTTC	1 cut(s)	552
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	28, 305, 386, 497, 508
Lsp1109I	GCAGC	5 cut(s)	52, 55, 144, 521, 543
LweI	GCATC	2 cut(s)	314, 598
MabI	ACCWGGT	1 cut(s)	485
MaeI	CTAG	1 cut(s)	144
MboII	GAAGA	4 cut(s)	84, 87, 90, 530
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	2 cut(s)	32, 139
MluNI	TGGCCA	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	216, 222
MnlI	CCTC	7 cut(s)	107, 193, 232, 250, 410, 448, 574
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	534
MspR9I	CCNGG	2 cut(s)	119, 487
MvaI	CCWGG	2 cut(s)	119, 487
NdeI	CATATG	1 cut(s)	493
NmeAIII	GCCGAG	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	2 cut(s)	176, 252
PfeI	GAWTC	2 cut(s)	89, 264
PkrI	GCNGC	5 cut(s)	42, 45, 134, 533, 536
PsiI	TTATAA	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	117, 485
PspGI	CCWGG	2 cut(s)	117, 485
PstNI	CAGNNNCTG	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	534
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SalI	GTCGAC	1 cut(s)	287
SatI	GCNGC	5 cut(s)	41, 44, 133, 532, 535
ScrFI	CCNGG	2 cut(s)	119, 487
SexAI	ACCWGGT	1 cut(s)	485
SfaNI	GCATC	2 cut(s)	314, 598
SfcI	CTRYAG	1 cut(s)	552
Sse9I	AATT	2 cut(s)	32, 139
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	117, 485
TaaI	ACNGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	32, 139
TfiI	GAWTC	2 cut(s)	89, 264
TscAI	CASTG	1 cut(s)	510
TseI	GCWGC	5 cut(s)	40, 43, 132, 531, 534
TspDTI	ATGAA	4 cut(s)	90, 311, 372, 447
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.