Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010318

Physical Location & Seq

Genomic Coordinates Reverse (-)

34158503 .. 34161237

Gene Structure 2735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1206900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGAGTTTGCCGTCTCCGTCGTCTCCGGTGTCGCCATCCCCCTCTGCTTCCAGCTCTGACAACTCCGCCACTCAACCCATCTCTCACTCTCCTCCAAATCCACAGGTTGAAGCAGGAGTCAACAATGGAGCTCTCGATGCCGAGGAGAAGAAGCCTGGTATTATTTCTGCATATTTCGATGACCTCCATAGTGCGAGCCACAGAGAGAAGTTCAAGAAATATGATGCTGACTATAGCCGTTGGTTGACTGCAAAATACTTCTCAAAAACAAACCTATATGGAGGCGACATCTTTGATGAGAGTGTGACAATACATGATCAGGTTATAAAGTCAAGCAGATGGCCTTGCACCCTCTCATATGCAGACCCGGTCCAGTTTCTTGAAGAACAGAACAGCTTTTCAACTTTTACTACTACAGCAGAAACCTCGCCTGGCATCTCAAACGGGAAGCACCTAGTAAAGAAGAGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.15

Weight (kDa)

5.67

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60840 AT5G60840
fragaria_vesca	FvH4_5g13250 FvH4_5g13250
malus_domestica	MD06G1206900.v1.1 MD14G1217500.v1.1
prunus_persica	Prupe.5G211300_v2.0.a1 Prupe.5G211300_v2.0.a1
pyrus_communis	pycom06g18470 pycom14g18020
rosa_chinensis	RchiOBHm_Chr7g0183911
rosa_laevigata	RLG00000005011
rosa_multiflora	Rmu_sc0004712.1_g000031 Rmu_sc0007533.1_g000007
rosa_roxburghii	Rroxscaffold_3G00270080
rosa_rugosa	Rorug06G0461300
rosa_samantha	Rh7AG062300 Rh7BG062500 Rh7CG063900 Rh7DG062400
rosa_wichuraiana	Rw7G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	471
AciI	CCGC	2 cut(s)	69, 471
AgsI	TTSAA	4 cut(s)	113, 217, 386, 405
AjnI	CCWGG	2 cut(s)	157, 433
AluBI	AGCT	3 cut(s)	57, 134, 399
AluI	AGCT	3 cut(s)	57, 134, 399
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	21, 30
AoxI	GGCC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	3 cut(s)	46, 89, 336
BceAI	ACGGC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	2 cut(s)	159, 435
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	21, 30
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	2 cut(s)	235, 417
Bme1390I	CCNGG	3 cut(s)	159, 371, 435
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	3 cut(s)	159, 371, 435
BmsI	GCATC	3 cut(s)	130, 217, 447
BpuMI	CCSGG	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	159, 435
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	2 cut(s)	84, 161
BshFI	GGCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	29, 371
BsmAI	GTCTC	2 cut(s)	21, 30
BsmBI	CGTCTC	2 cut(s)	21, 30
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	2 cut(s)	69, 471
BspANI	GGCC	1 cut(s)	346
BspQI	GCTCTTC	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	319
Bst2UI	CCWGG	2 cut(s)	159, 435
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	2 cut(s)	21, 30
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	159, 435
BstSCI	CCNGG	3 cut(s)	157, 369, 433
BstSFI	CTRYAG	2 cut(s)	235, 417
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	373
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	7 cut(s)	57, 134, 157, 201, 240, 346, 399
CviKI_1	RGCY	7 cut(s)	57, 134, 157, 201, 240, 346, 399
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	157, 433
EcoT38I	GRGCYC	1 cut(s)	136
Esp3I	CGTCTC	2 cut(s)	21, 30
FaeI	CATG	1 cut(s)	320
FatI	CATG	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	319
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	2 cut(s)	29, 371
Hin1II	CATG	1 cut(s)	320
HincII	GTYRAC	2 cut(s)	124, 249
HindII	GTYRAC	2 cut(s)	124, 249
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	29, 371
Hpy166II	GTNNAC	2 cut(s)	124, 249
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	3 cut(s)	137, 217, 383
Hpy8I	GTNNAC	2 cut(s)	124, 249
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	173, 254, 351, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	319
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	131
LweI	GCATC	3 cut(s)	130, 217, 447
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	321
MbiI	CCGCTC	1 cut(s)	471
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	163, 398
MhlI	GDGCHC	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	7 cut(s)	55, 105, 139, 197, 278, 365, 439
MspI	CCGG	2 cut(s)	29, 371
MspR9I	CCNGG	3 cut(s)	159, 371, 435
MvaI	CCWGG	2 cut(s)	159, 435
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	371
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	320
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	461
PflFI	GACNNNGTC	1 cut(s)	371
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	157, 433
PspGI	CCWGG	2 cut(s)	157, 433
PspPI	GGNCC	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	461
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	159, 371, 435
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	9 cut(s)	59, 111, 136, 189, 279, 327, 401, 431, 459
SfaNI	GCATC	3 cut(s)	130, 217, 447
SfcI	CTRYAG	2 cut(s)	235, 417
SinI	GGWCC	1 cut(s)	373
SsiI	CCGC	2 cut(s)	69, 471
SspMI	CTAG	1 cut(s)	458
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	3 cut(s)	157, 369, 433
TaqI	TCGA	2 cut(s)	138, 180
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	9
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	373
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.