Prupe.5G211300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010318
Physical Location & Seq
Reverse (-)
16771659 .. 16775106
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G211300.1

Sequence Viewer

Length: 474 bp
ATGGCGAGTGTGCCGTCTCCGTCGTCTCCTCCAGCCTCGCCGTCTTCTGCTTCCAGCTCCGACAACTCCGCCACTGAACCCATCTCTCACTCTCCTCCAAATCCACAGGTTGATGCTGGGGTTAACAATGGGGTTCTCAATGTCGACGAGAAAAAGCCTGATATTTCTGCATATTTTGATGATCTTCACAGTGCCAACCACATTGAAAAGTTCAAGAAATATGAAGCTGACTACAGTCGTTGGTTGACTGCAAAATACTTCTCAAAGAAGAATCTGTATGGAGGCAACATCTTTGATGAAGATATGACAATCCAGGATGAGATTATTAAGTCAAGCAGGTGGCCTTGTACCCGATCATATGCAGACCCAGTGCAGGGTTTTGAAGAACAGAGCAACAGCTGTTCAACTACTACTATAGCCGAGACCCCATCTAACATCTCAAATGGGAAGCACCTAGCAAAGAAGAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.15

Weight (kDa)

5.3

Isoelectric Point (pI)

74.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 327
Acc36I ACCTGC 1 cut(s) 327
AccI GTMKAC 1 cut(s) 144
AciI CCGC 1 cut(s) 69
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 2 cut(s) 373, 374
AgsI TTSAA 4 cut(s) 206, 214, 383, 405
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 3 cut(s) 57, 227, 399
AluI AGCT 3 cut(s) 57, 227, 399
Alw26I GTCTC 3 cut(s) 21, 30, 416
AoxI GGCC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 36
BccI CCATC 2 cut(s) 89, 436
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 314
BcoDI GTCTC 3 cut(s) 21, 30, 416
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 2 cut(s) 232, 414
BfuAI ACCTGC 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 314
BmrFI CCNGG 1 cut(s) 314
BmrI ACTGGG 1 cut(s) 362
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 362
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 416
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 374
Bse1I ACTGG 1 cut(s) 368
BseBI CCWGG 1 cut(s) 314
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 373, 374
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 2 cut(s) 18, 84
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 392
BshFI GGCC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 373, 374
BsmAI GTCTC 3 cut(s) 21, 30, 416
BsmBI CGTCTC 2 cut(s) 21, 30
BsnI GGCC 1 cut(s) 343
Bso31I GGTCTC 1 cut(s) 416
Bsp143I GATC 2 cut(s) 181, 353
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 416
BsrI ACTGG 1 cut(s) 368
BssMI GATC 2 cut(s) 181, 353
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 191, 236, 470
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 2 cut(s) 184, 356
BstMAI GTCTC 3 cut(s) 21, 30, 416
BstMBI GATC 2 cut(s) 181, 353
BstNI CCWGG 1 cut(s) 314
BstPAI GACNNNNGTC 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 2 cut(s) 232, 414
BstV2I GAAGAC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 3 cut(s) 72, 196, 375
BveI ACCTGC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 348
CviJI RGCY 7 cut(s) 35, 57, 157, 227, 343, 399, 419
CviKI_1 RGCY 7 cut(s) 35, 57, 157, 227, 343, 399, 419
CviQI GTAC 1 cut(s) 348
DpnI GATC 2 cut(s) 183, 355
DpnII GATC 2 cut(s) 181, 353
EciI GGCGGA 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 312
Esp3I CGTCTC 2 cut(s) 21, 30
FaiI YATR 7 cut(s) 172, 222, 279, 305, 358, 360, 416
FauNDI CATATG 1 cut(s) 358
FblI GTMKAC 1 cut(s) 144
FokI GGATG 1 cut(s) 329
FspBI CTAG 1 cut(s) 455
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 1 cut(s) 343
HincII GTYRAC 3 cut(s) 124, 145, 246
HindII GTYRAC 3 cut(s) 124, 145, 246
HinfI GANTC 1 cut(s) 271
HpaI GTTAAC 1 cut(s) 124
Hpy166II GTNNAC 3 cut(s) 124, 145, 246
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 3 cut(s) 124, 145, 246
Hpy99I CGWCG 2 cut(s) 25, 149
HpyCH4III ACNGT 3 cut(s) 191, 236, 470
HpyCH4V TGCA 4 cut(s) 170, 251, 362, 373
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 181, 353
LmnI GCTCC 1 cut(s) 62
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 455
MalI GATC 2 cut(s) 183, 355
MboI GATC 2 cut(s) 181, 353
MboII GAAGA 5 cut(s) 36, 176, 280, 311, 395
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 4 cut(s) 39, 46, 105, 275
MseI TTAA 2 cut(s) 123, 327
MspA1I CMGCKG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
NdeI CATATG 1 cut(s) 358
NdeII GATC 2 cut(s) 181, 353
NmeAIII GCCGAG 1 cut(s) 445
PaqCI CACCTGC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 271
PfoI TCCNGGA 1 cut(s) 312
PshAI GACNNNNGTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 399
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 123, 327
Sau3AI GATC 2 cut(s) 181, 353
ScrFI CCNGG 1 cut(s) 314
SetI ASST 6 cut(s) 59, 111, 229, 341, 401, 456
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 2 cut(s) 232, 414
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 191, 236, 470
TaqI TCGA 1 cut(s) 144
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 123, 327
Tru9I TTAA 2 cut(s) 123, 327
TscAI CASTG 3 cut(s) 79, 196, 375
TspDTI ATGAA 2 cut(s) 237, 312
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 3 cut(s) 79, 196, 375
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.