pycom06g18470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0010318
Physical Location & Seq
Reverse (-)
22233034 .. 22233511
478 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18470.2

Sequence Viewer

Length: 399 bp
ATGACCTTTGTTTGTGTTAGTGACCTCCATAGCGCGAGCCACAGAGAGAAGTTCAAGAAATATGAAGCTGACTATAGCCGTTGGTTGACTGCAAAATACTTCTCAAAAACAAACCTATATGGAGGCGACATCTTTGATGAGAGTGTGACAATACATGATCAGGTTATAAAGTCAAGCAGGTACAGTATACTGAACCTTGTTGTTCTAACTGAATTTCCTATGCTATTTCCGAAGCTAATCATGTTTCGTTCCTCTATGTCTAGATGGCCTCGCACCCTCTCATATGCAGACCCGGTCCAGTTTCTTGAAGAACAGAACAGCTTTTCAACTTTTACCGCTACAGCAGAAACCTCGCCTACCATCTCAAACGGGAAGCACCTGGTAAAGAAGAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.21

Weight (kDa)

9.01

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 187
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 3 cut(s) 55, 308, 327
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 3 cut(s) 68, 235, 321
AluI AGCT 3 cut(s) 68, 235, 321
AoxI GGCC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 295
BccI CCATC 2 cut(s) 258, 368
BceAI ACGGC 1 cut(s) 63
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 293
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 73, 339
BfuAI ACCTGC 1 cut(s) 168
Bme1390I CCNGG 2 cut(s) 293, 380
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmrFI CCNGG 2 cut(s) 293, 380
BpuMI CCSGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 293
BsnI GGCC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 336
BspANI GGCC 1 cut(s) 268
BspFNI CGCG 1 cut(s) 35
BspMI ACCTGC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 298
BssMI GATC 1 cut(s) 157
BssNAI GTATAC 1 cut(s) 188
Bst1107I GTATAC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 37
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 291, 378
BstSFI CTRYAG 2 cut(s) 73, 339
BstUI CGCG 1 cut(s) 35
BstZ17I GTATAC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 268
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 295
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 155, 241
CviJI RGCY 6 cut(s) 39, 68, 78, 235, 268, 321
CviKI_1 RGCY 6 cut(s) 39, 68, 78, 235, 268, 321
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 378
FaeI CATG 2 cut(s) 158, 244
FatI CATG 2 cut(s) 154, 240
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 187
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 293
HhaI GCGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 158, 244
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HpaII CCGG 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 87, 188
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 3 cut(s) 55, 261, 305
Hpy8I GTNNAC 2 cut(s) 87, 188
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 92, 287
Hsp92II CATG 2 cut(s) 158, 244
HspAI GCGC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 6 cut(s) 146, 163, 306, 311, 365, 392
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 20, 145
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 320
MluCI AATT 1 cut(s) 212
MnlI CCTC 6 cut(s) 35, 116, 262, 279, 287, 361
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 293, 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 35
NciI CCSGG 1 cut(s) 293
NdeI CATATG 1 cut(s) 283
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 158, 244
NmuCI GTSAC 2 cut(s) 20, 145
PflFI GACNNNGTC 1 cut(s) 293
PsiI TTATAA 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspPI GGNCC 1 cut(s) 295
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 2 cut(s) 293, 380
SexAI ACCWGGT 1 cut(s) 378
SfcI CTRYAG 2 cut(s) 73, 339
SinI GGWCC 1 cut(s) 295
Sse9I AATT 1 cut(s) 212
SsiI CCGC 1 cut(s) 336
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 291, 378
TaaI ACNGT 1 cut(s) 185
TasI AATT 1 cut(s) 212
TseFI GTSAC 2 cut(s) 20, 145
Tsp45I GTSAC 2 cut(s) 20, 145
TspDTI ATGAA 1 cut(s) 78
Tth111I GACNNNGTC 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 212
XbaI TCTAGA 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.