AT5G60920

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013790
Physical Location & Seq
Reverse (-)
24511152 .. 24514338
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60920.2

Sequence Viewer

Length: 1371 bp
ATGGAGTCTTTCTTCTCCAGATCCACCTCCATCGTCTCCAAATTGAGTTTCTTGGCCTTATGGATCGTCTTCTTGATTTCTTCATCTTCTTTTACTTCGACAGAAGCATATGATGCGCTTGATCCAGAAGGCAACATTACAATGAAATGGGATGTTATGAGCTGGACTCCTGATGGCTATGTTGCCGTGGTTACGATGTTCAACTTCCAGAAATACAGACACATTCAATCTCCAGGATGGACATTAGGTTGGAAATGGGCAAAGAAGGAAGTTATATGGAGTATGGTTGGAGCACAAACAACTGAACAAGGTGATTGTTCAAAGTACAAAGGAAACATACCACATTGTTGTAAGAAGGATCCAACAGTTGTAGACTTGCTTCCAGGGACTCCTTATAATCAGCAGATTGCTAATTGCTGCAAGGGTGGTGTTATGAACTCATGGGTTCAAGACCCTGCCACTGCGGCTAGCTCCTTCCAGATTAGTGTTGGTGCTGCTGGAACCACAAACAAAACCGTTAGGGTCCCAAGAAACTTCACTCTCATGGGACCTGGTCCAGGTTACACTTGTGGTCCAGCAAAGATTGTCAGACCAACAAAATTTGTCACGACTGACACACGCAGAACCACTCAAGCTATGATGACATGGAACATTACGTGCACATACTCGCAGTTCCTTGCTCAAAGAACTCCAACTTGCTGTGTTTCTTTATCTTCTTTCTACAATGAAACCATTGTTGGATGTCCAACTTGTGCTTGCGGATGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGACCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGGAACGGTTTTACCACCATTAGTGCAATGCACGAGACACATGTGCCCGATCAGAGTGCATTGGCATGTAAAGCAGAACTACAAAGAGTATTGGCGTGTGAAGATCACAATCACAAACTTCAACTATCGCTTGAACTACACACAATGGAACCTTGTTGCTCAACATCCAAATCTCGACAACATCACTCAAATCTTCAGCTTCAACTACAAATCTCTTACTCCTTACGCTGGACTAAACGATACGGCGATGTTATGGGGAGTGAAGTTCTACAACGATTTCTTATCAGAAGCAGGTCCTCTTGGGAATGTTCAATCAGAGATTTTGTTCCGTAAAGACCAATCAACCTTCACATTCGAGAAAGGTTGGGCTTTTCCACGAAGGATTTACTTTAATGGAGACAATTGCGTCATGCCTCCTCCAGACTCTTACCCTTTTCTTCCCAACGGTGGTTCCCGGTCACAATTCTCATTCGTCGCCGCCGTGCTCCTCCCTCTTCTTGTCTTTTTCTTCTTCTCTGCCTAA

Protein Analysis

456

Amino Acids

51.2

Weight (kDa)

8.93

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 13 - 176 1.9e-69 COBRA-like protein
COB_C PF25079 185 - 380 8.6e-63 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60920 AT5G60920
fragaria_vesca FvH4_5g13550
malus_domestica MD06G1203700.v1.1 MD14G1214800.v1.1
prunus_persica Prupe.5G207800_v2.0.a1
pyrus_communis pycom06g18190 pycom14g17790
rosa_chinensis RchiOBHm_Chr7g0183381
rosa_laevigata RLG00000005051
rosa_multiflora Rmu_sc0000951.1_g000012
rosa_roxburghii Rroxscaffold_3G00270490
rosa_rugosa Rorug06G0457600
rosa_samantha Rh7AG058700 Rh7BG058700 Rh7DG058400
rosa_wichuraiana Rw7G004830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AasI GACNNNNNNGTC 1 cut(s) 1253
Acc36I ACCTGC 1 cut(s) 1130
AccB1I GGYRCC 1 cut(s) 788
AccI GTMKAC 1 cut(s) 372
AciI CCGC 3 cut(s) 464, 759, 1326
AclWI GGATC 5 cut(s) 15, 71, 116, 353, 366
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 1027
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 4 cut(s) 557, 802, 1076, 1295
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 8 cut(s) 202, 227, 321, 449, 970, 982, 1051, 1160
AjnI CCWGG 4 cut(s) 232, 382, 550, 556
AjuI GAANNNNNNNTTGG 4 cut(s) 32, 64, 720, 752
AluBI AGCT 4 cut(s) 162, 471, 635, 1047
AluI AGCT 4 cut(s) 162, 471, 635, 1047
Alw21I GWGCWC 3 cut(s) 295, 662, 1335
Alw26I GTCTC 3 cut(s) 40, 877, 1239
Alw44I GTGCAC 1 cut(s) 658
AlwI GGATC 5 cut(s) 15, 71, 116, 353, 366
AoxI GGCC 1 cut(s) 54
ApaLI GTGCAC 1 cut(s) 658
ApeKI GCWGC 2 cut(s) 417, 494
ApoI RAATTY 1 cut(s) 599
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 5 cut(s) 523, 548, 554, 572, 1142
AsuC2I CCSGG 2 cut(s) 803, 1303
AsuHPI GGTGA 2 cut(s) 323, 825
AsuNHI GCTAGC 1 cut(s) 467
AvaII GGWCC 5 cut(s) 523, 548, 554, 572, 1142
BaeGI GKGCMC 2 cut(s) 662, 896
BamHI GGATCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 788
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BauI CACGAG 1 cut(s) 880
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 3 cut(s) 295, 662, 1335
BbvI GCAGC 2 cut(s) 404, 481
BccI CCATC 3 cut(s) 38, 167, 231
BceAI ACGGC 3 cut(s) 170, 1107, 1313
BcgI CGANNNNNNTGC 2 cut(s) 886, 920
BciT130I CCWGG 4 cut(s) 234, 384, 552, 558
BcnI CCSGG 2 cut(s) 803, 1303
BcoDI GTCTC 3 cut(s) 40, 877, 1239
BfaI CTAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 1130
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 4 cut(s) 418, 465, 495, 1326
BlsI GCNGC 4 cut(s) 419, 466, 496, 1327
Bme1390I CCNGG 6 cut(s) 234, 384, 552, 558, 803, 1303
Bme18I GGWCC 5 cut(s) 523, 548, 554, 572, 1142
BmgT120I GGNCC 5 cut(s) 523, 548, 554, 572, 1142
BmiI GGNNCC 8 cut(s) 360, 502, 524, 525, 549, 790, 998, 1300
BmrFI CCNGG 6 cut(s) 234, 384, 552, 558, 803, 1303
BmsI GCATC 1 cut(s) 103
BmtI GCTAGC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 2 cut(s) 216, 1251
BpuEI CTTGAG 1 cut(s) 615
BpuMI CCSGG 2 cut(s) 803, 1303
BsaAI YACGTR 1 cut(s) 657
BsaBI GATNNNNATC 1 cut(s) 956
BsaJI CCNNGG 3 cut(s) 186, 383, 822
BsaWI WCCGGW 1 cut(s) 785
Bsc4I CCNNNNNNNGG 4 cut(s) 557, 802, 1076, 1295
Bse3DI GCAATG 1 cut(s) 881
Bse8I GATNNNNATC 1 cut(s) 956
BseBI CCWGG 4 cut(s) 234, 384, 552, 558
BseDI CCNNGG 3 cut(s) 186, 383, 822
BseGI GGATG 5 cut(s) 157, 242, 746, 767, 1012
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 4 cut(s) 557, 802, 1076, 1295
BseMI GCAATG 1 cut(s) 881
BseRI GAGGAG 2 cut(s) 1254, 1325
BseSI GKGCMC 2 cut(s) 662, 896
BseXI GCAGC 2 cut(s) 404, 481
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 788
BsiHKAI GWGCWC 3 cut(s) 295, 662, 1335
BsiSI CCGG 3 cut(s) 786, 803, 1303
BslFI GGGAC 3 cut(s) 400, 509, 561
BslI CCNNNNNNNGG 4 cut(s) 557, 802, 1076, 1295
BsmAI GTCTC 3 cut(s) 40, 877, 1239
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 3 cut(s) 400, 509, 561
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 4 cut(s) 295, 662, 896, 1335
Bsp143I GATC 6 cut(s) 20, 63, 121, 358, 897, 951
BspACI CCGC 3 cut(s) 464, 759, 1326
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 8 cut(s) 360, 502, 524, 525, 549, 790, 998, 1300
BspMI ACCTGC 1 cut(s) 1130
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 5 cut(s) 15, 71, 116, 353, 366
BspT107I GGYRCC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 881
BssECI CCNNGG 3 cut(s) 186, 383, 822
BssMI GATC 6 cut(s) 20, 63, 121, 358, 897, 951
BssSI CACGAG 1 cut(s) 880
Bst2BI CACGAG 1 cut(s) 880
Bst2UI CCWGG 4 cut(s) 234, 384, 552, 558
Bst4CI ACNGT 4 cut(s) 367, 517, 856, 1295
Bst6I CTCTTC 1 cut(s) 1347
BstAPI GCANNNNNTGC 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 657
BstC8I GCNNGC 3 cut(s) 469, 757, 793
BstDEI CTNAG 1 cut(s) 817
BstDSI CCRYGG 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 5 cut(s) 157, 242, 746, 767, 1012
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 6 cut(s) 23, 66, 124, 361, 900, 954
BstMAI GTCTC 3 cut(s) 40, 877, 1239
BstMBI GATC 6 cut(s) 20, 63, 121, 358, 897, 951
BstMWI GCNNNNNNNGC 3 cut(s) 113, 464, 919
BstNI CCWGG 4 cut(s) 234, 384, 552, 558
BstNSI RCATGY 2 cut(s) 892, 917
BstSCI CCNGG 6 cut(s) 232, 382, 550, 556, 801, 1301
BstSLI GKGCMC 2 cut(s) 662, 896
BstV1I GCAGC 2 cut(s) 404, 481
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 20, 358
BstYI RGATCY 2 cut(s) 20, 358
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 1109
BtsCI GGATG 5 cut(s) 157, 242, 746, 767, 1012
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 459
BveI ACCTGC 1 cut(s) 1130
Cac8I GCNNGC 3 cut(s) 469, 757, 793
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 5 cut(s) 523, 548, 554, 572, 1142
CseI GACGC 1 cut(s) 1243
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 1 cut(s) 325
CviAII CATG 6 cut(s) 441, 544, 645, 889, 914, 1258
CviJI RGCY 9 cut(s) 56, 162, 177, 467, 471, 635, 821, 1047, 1217
CviKI_1 RGCY 9 cut(s) 56, 162, 177, 467, 471, 635, 821, 1047, 1217
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 817
DpnI GATC 6 cut(s) 22, 65, 123, 360, 899, 953
DpnII GATC 6 cut(s) 20, 63, 121, 358, 897, 951
DrdI GACNNNNNNGTC 1 cut(s) 1253
DseDI GACNNNNNNGTC 1 cut(s) 1253
Eam1104I CTCTTC 1 cut(s) 1347
EarI CTCTTC 1 cut(s) 1347
Eco47I GGWCC 5 cut(s) 523, 548, 554, 572, 1142
Eco57I CTGAAG 1 cut(s) 1027
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoO109I RGGNCCY 3 cut(s) 523, 548, 1142
EcoRII CCWGG 4 cut(s) 232, 382, 550, 556
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 6 cut(s) 444, 547, 648, 892, 917, 1261
FaqI GGGAC 3 cut(s) 400, 509, 561
FatI CATG 6 cut(s) 440, 543, 644, 888, 913, 1257
FauNDI CATATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 4 cut(s) 418, 465, 495, 1326
FokI GGATG 5 cut(s) 164, 249, 753, 774, 999
Fsp4HI GCNGC 4 cut(s) 418, 465, 495, 1326
FspBI CTAG 1 cut(s) 468
GlaI GCGC 1 cut(s) 117
GluI GCNGC 4 cut(s) 418, 465, 495, 1326
GsuI CTGGAG 2 cut(s) 216, 1251
HaeIII GGCC 1 cut(s) 56
HapII CCGG 3 cut(s) 786, 803, 1303
HgaI GACGC 1 cut(s) 1243
HhaI GCGC 1 cut(s) 118
Hin1II CATG 6 cut(s) 444, 547, 648, 892, 917, 1261
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 5 cut(s) 5, 166, 388, 782, 1271
HpaII CCGG 3 cut(s) 786, 803, 1303
HphI GGTGA 2 cut(s) 323, 825
Hpy166II GTNNAC 2 cut(s) 373, 660
Hpy188I TCNGA 4 cut(s) 590, 902, 1135, 1165
Hpy8I GTNNAC 2 cut(s) 373, 660
Hpy99I CGWCG 1 cut(s) 1325
HpyAV CCTTC 6 cut(s) 122, 259, 349, 484, 1204, 1221
HpyCH4III ACNGT 4 cut(s) 367, 517, 856, 1295
HpyCH4IV ACGT 1 cut(s) 656
HpyCH4V TGCA 5 cut(s) 420, 660, 874, 879, 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 464, 919
HpyF3I CTNAG 1 cut(s) 817
HpySE526I ACGT 1 cut(s) 656
Hsp92II CATG 6 cut(s) 444, 547, 648, 892, 917, 1261
HspAI GCGC 1 cut(s) 116
KflI GGGWCCC 1 cut(s) 523
Kzo9I GATC 6 cut(s) 20, 63, 121, 358, 897, 951
LmnI GCTCC 3 cut(s) 290, 476, 1338
Lsp1109I GCAGC 2 cut(s) 404, 481
LweI GCATC 1 cut(s) 103
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 656
MaeIII GTNAC 5 cut(s) 190, 560, 604, 831, 1305
MalI GATC 6 cut(s) 22, 65, 123, 360, 899, 953
MboI GATC 6 cut(s) 20, 63, 121, 358, 897, 951
MfeI CAATTG 1 cut(s) 1249
MflI RGATCY 2 cut(s) 20, 358
MhlI GDGCHC 4 cut(s) 295, 662, 896, 1335
MluCI AATT 5 cut(s) 41, 412, 599, 1249, 1310
MlyI GAGTC 4 cut(s) 14, 160, 382, 1265
MmeI TCCRAC 6 cut(s) 230, 268, 386, 716, 718, 770
MnlI CCTC 8 cut(s) 37, 806, 832, 1155, 1272, 1275, 1346, 1350
MseI TTAA 1 cut(s) 1239
MslI CAYNNNNRTG 3 cut(s) 140, 542, 912
MspI CCGG 3 cut(s) 786, 803, 1303
MspR9I CCNGG 6 cut(s) 234, 384, 552, 558, 803, 1303
MunI CAATTG 1 cut(s) 1249
MvaI CCWGG 4 cut(s) 234, 384, 552, 558
MwoI GCNNNNNNNGC 3 cut(s) 113, 464, 919
NciI CCSGG 2 cut(s) 803, 1303
NdeI CATATG 1 cut(s) 109
NdeII GATC 6 cut(s) 20, 63, 121, 358, 897, 951
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 6 cut(s) 444, 547, 648, 892, 917, 1261
NlaIV GGNNCC 8 cut(s) 360, 502, 524, 525, 549, 790, 998, 1300
NmuCI GTSAC 3 cut(s) 604, 831, 1305
NspI RCATGY 2 cut(s) 892, 917
PciI ACATGT 1 cut(s) 888
PcsI WCGNNNNNNNCGW 1 cut(s) 1326
PfeI GAWTC 1 cut(s) 782
PflFI GACNNNGTC 1 cut(s) 552
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 4 cut(s) 419, 466, 496, 1327
PleI GAGTC 4 cut(s) 13, 160, 382, 1265
PpsI GAGTC 4 cut(s) 13, 160, 382, 1265
Ppu21I YACGTR 1 cut(s) 657
PpuMI RGGWCCY 3 cut(s) 523, 548, 1142
PscI ACATGT 1 cut(s) 888
PsiI TTATAA 1 cut(s) 396
Psp5II RGGWCCY 3 cut(s) 523, 548, 1142
Psp6I CCWGG 4 cut(s) 232, 382, 550, 556
PspGI CCWGG 4 cut(s) 232, 382, 550, 556
PspN4I GGNNCC 8 cut(s) 360, 502, 524, 525, 549, 790, 998, 1300
PspPI GGNCC 5 cut(s) 523, 548, 554, 572, 1142
PspPPI RGGWCCY 3 cut(s) 523, 548, 1142
PsuI RGATCY 2 cut(s) 20, 358
PsyI GACNNNGTC 1 cut(s) 552
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 3 cut(s) 140, 542, 912
SaqAI TTAA 1 cut(s) 1239
SatI GCNGC 4 cut(s) 418, 465, 495, 1326
Sau3AI GATC 6 cut(s) 20, 63, 121, 358, 897, 951
Sau96I GGNCC 5 cut(s) 523, 548, 554, 572, 1142
SchI GAGTC 4 cut(s) 14, 160, 382, 1265
ScrFI CCNGG 6 cut(s) 234, 384, 552, 558, 803, 1303
SduI GDGCHC 4 cut(s) 295, 662, 896, 1335
SexAI ACCWGGT 1 cut(s) 550
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 5 cut(s) 523, 548, 554, 572, 1142
SmiMI CAYNNNNRTG 3 cut(s) 140, 542, 912
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
Sse9I AATT 5 cut(s) 41, 412, 599, 1249, 1310
SsiI CCGC 3 cut(s) 464, 759, 1326
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 6 cut(s) 232, 382, 550, 556, 801, 1301
TaaI ACNGT 4 cut(s) 367, 517, 856, 1295
TaiI ACGT 1 cut(s) 659
TaqI TCGA 4 cut(s) 98, 798, 1023, 1203
TasI AATT 5 cut(s) 41, 412, 599, 1249, 1310
TatI WGTACW 1 cut(s) 324
TauI GCSGC 2 cut(s) 467, 1328
TfiI GAWTC 1 cut(s) 782
Tru1I TTAA 1 cut(s) 1239
Tru9I TTAA 1 cut(s) 1239
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 3 cut(s) 604, 831, 1305
TseI GCWGC 2 cut(s) 417, 494
Tsp45I GTSAC 3 cut(s) 604, 831, 1305
TspDTI ATGAA 4 cut(s) 72, 158, 449, 741
TspGWI ACGGA 1 cut(s) 1166
TspRI CASTG 1 cut(s) 466
Tth111I GACNNNGTC 1 cut(s) 552
VneI GTGCAC 1 cut(s) 658
VpaK11BI GGWCC 5 cut(s) 523, 548, 554, 572, 1142
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 1 cut(s) 599
XceI RCATGY 2 cut(s) 892, 917
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.