Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013790

Physical Location & Seq

Genomic Coordinates Forward (+)

3991954 .. 3994661

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAGTCCCAGTGCCTCTCAGCCACTGGATCCATAGCTAAACTCAGCAGCTTCACCATTCTGCTTTTATTTTTGGTTTCCTGCCTCACTTTCACTTCTACAGAAGCTTATGATGCGCTTGATCCACTTGGGAATATTACCATTAAATGGGATGTCATTAGTTGGACTCCTGATGGATATGTTGCCGTTGTTACAATGTTCAACTTCCAGCAGTATCGCCATATACAAGCGCCAGGTTGGACGTTAGGATGGACATGGGCAAAGAAGGAAGTAATCTGGAGCATGGTGGGAGCACAAACCACAGAGCAAGGGGATTGTTCAAGATACAAAGGCAATGTACCACATTGCTGTAAGAAGGATCCCACTGTCGTGGATTTGTTACCCGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGCAGGGGTTATGCAATCATATATCCAAGACCCAGCGAATGCTGTGAGTTCATTCCAGATCAGTGTGGGTGCTGCAGGAACCACTAACAAGACTGTTAGACTTCCTAAAAACTTCACATTGAAAGCACCAGGGCCTGGATATTCATGTGGGCGAGCAGCGATTGTCAAGCCAACCAGATATTTAACAGCAGATAAAAGAAGAATGACCCAAGCCATGATGACCTGGAATGTTACTTGCACATACTCTCAATTCCTAGCTCAAAAGACACCTACTTGTTGTGTTTCTCTCTCCTCCTTCTATAATGACACCATAGTAAACTGTCCTACTTGTGCATGCGGTTGTGAGAACAACAGTACAGATCCGGGGAGCTGCGTAGAGCCAGACTCTCCGTACTTAGCTTCAGCTGTAGCAGGTTCTGGAAAAGCTACTAATTCTCCGTTGGTCCAGTGTACCAGCCATATGTGTCCAGTGAGAGTCCATTGGCATGTGAAGCTCAATTACAAGGAGTACTGGAGGGTGAAAGTTACAGTTACAAATTTCAATTACAGAATGAACTACACTCTCTGGAATATTGTTGTTCAACATCCCAACTTCGATAATTTGACCAAGATTTTCAGCTTTAATTACAAGGACTTGACTCCTTATGCTGGCTTGAATGATACTGCAATGTTGTGGGGAGTCAAGTTTTATAATGACTTGCTCATGCAAGCTGGTCCTCTTGGAAATGCGCAGTCAGAGCTTCTATTTCGGAAAGATGCGTCAACTTTTACTTTTGAAAAGGGATGGGCTTTCCCTCGAAGGATTTATTTTAACGGTGATAACTGTGTCATGCCACCTCCAGATGCTTATCCGTGGTTGCCAAATGCCAGTCCTAGACCAACCATTTCCCTACTTAGTCCGGTTATAACTATCTTGGCATCTCTGGTATTTTTATTGTCTTATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009505 GO:0009628 GO:0009651 GO:0009664 GO:0009825 GO:0009832 GO:0009897 GO:0009930 GO:0009986 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030198 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042546 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

456

Amino Acids

50.68

Weight (kDa)

8.67

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	60 - 223	7.2e-69	COBRA-like protein
COB_C	PF25079	232 - 425	5.6e-62	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60920 AT5G60920
fragaria_vesca	FvH4_5g13550
malus_domestica	MD06G1203700.v1.1 MD14G1214800.v1.1
prunus_persica	Prupe.5G207800_v2.0.a1
pyrus_communis	pycom06g18190 pycom14g17790
rosa_chinensis	RchiOBHm_Chr7g0183381
rosa_laevigata	RLG00000005051
rosa_multiflora	Rmu_sc0000951.1_g000012
rosa_roxburghii	Rroxscaffold_3G00270490
rosa_rugosa	Rorug06G0457600
rosa_samantha	Rh7AG058700 Rh7BG058700 Rh7DG058400
rosa_wichuraiana	Rw7G004830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	396, 1113, 1328
Acc16I	TGCGCA	1 cut(s)	1152
Acc36I	ACCTGC	1 cut(s)	824
AccB7I	CCANNNNNTGG	2 cut(s)	147, 557
AciI	CCGC	1 cut(s)	759
AclWI	GGATC	6 cut(s)	24, 37, 116, 353, 366, 776
AcsI	RAATTY	1 cut(s)	958
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	5 cut(s)	339, 778, 815, 874, 932
AfiI	CCNNNNNNNGG	3 cut(s)	147, 557, 1070
AgsI	TTSAA	7 cut(s)	202, 321, 544, 964, 1004, 1078, 1199
AjnI	CCWGG	4 cut(s)	232, 550, 556, 644
AleI	CACNNNNGTG	1 cut(s)	368
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	6 cut(s)	24, 37, 116, 353, 366, 776
AlwNI	CAGNNNCTG	3 cut(s)	26, 557, 839
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	5 cut(s)	48, 417, 494, 578, 792
ApoI	RAATTY	1 cut(s)	958
AspLEI	GCGC	3 cut(s)	118, 232, 1153
AspS9I	GGNCC	3 cut(s)	554, 865, 1136
AsuC2I	CCSGG	2 cut(s)	384, 786
AsuHPI	GGTGA	3 cut(s)	46, 952, 1250
AvaII	GGWCC	2 cut(s)	865, 1136
BamHI	GGATCC	2 cut(s)	29, 358
BarI	GAAGNNNNNNTAC	2 cut(s)	905, 937
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	5 cut(s)	60, 404, 481, 590, 779
BccI	CCATC	3 cut(s)	167, 243, 1200
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	4 cut(s)	234, 552, 558, 646
BcnI	CCSGG	2 cut(s)	384, 786
BfaI	CTAG	2 cut(s)	677, 1296
BfmI	CTRYAG	3 cut(s)	99, 495, 828
BfoI	RGCGCY	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	824
BisI	GCNGC	5 cut(s)	49, 418, 495, 579, 793
BlsI	GCNGC	5 cut(s)	50, 419, 496, 580, 794
BmcAI	AGTACT	1 cut(s)	932
Bme1390I	CCNGG	6 cut(s)	234, 384, 552, 558, 646, 786
Bme18I	GGWCC	2 cut(s)	865, 1136
BmgT120I	GGNCC	3 cut(s)	554, 865, 1136
BmiI	GGNNCC	3 cut(s)	31, 360, 502
BmrFI	CCNGG	6 cut(s)	234, 384, 552, 558, 646, 786
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	4 cut(s)	103, 1168, 1255, 1349
BmuI	ACTGGG	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
BpmI	CTGGAG	3 cut(s)	298, 955, 1245
BpuMI	CCSGG	2 cut(s)	384, 786
BsaBI	GATNNNNATC	1 cut(s)	1269
BsaJI	CCNNGG	3 cut(s)	551, 785, 1274
BsaWI	WCCGGW	1 cut(s)	1321
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 841, 871
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 557, 1070
Bse1I	ACTGG	6 cut(s)	10, 31, 868, 890, 938, 1290
Bse3DI	GCAATG	3 cut(s)	340, 343, 1095
Bse8I	GATNNNNATC	1 cut(s)	1269
BseBI	CCWGG	4 cut(s)	234, 552, 558, 646
BseDI	CCNNGG	3 cut(s)	551, 785, 1274
BseGI	GGATG	4 cut(s)	157, 254, 1006, 1211
BseJI	GATNNNNATC	1 cut(s)	1269
BseLI	CCNNNNNNNGG	3 cut(s)	147, 557, 1070
BseMI	GCAATG	3 cut(s)	340, 343, 1095
BseMII	CTCAG	2 cut(s)	33, 58
BseNI	ACTGG	6 cut(s)	10, 31, 868, 890, 938, 1290
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	5 cut(s)	60, 404, 481, 590, 779
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	3 cut(s)	384, 785, 1322
BslI	CCNNNNNNNGG	3 cut(s)	147, 557, 1070
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	29, 121, 358, 480, 781
BspACI	CCGC	1 cut(s)	759
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	2 cut(s)	32, 57
BspLI	GGNNCC	3 cut(s)	31, 360, 502
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	824
BspPI	GGATC	6 cut(s)	24, 37, 116, 353, 366, 776
BsrDI	GCAATG	3 cut(s)	340, 343, 1095
BsrI	ACTGG	6 cut(s)	10, 31, 868, 890, 938, 1290
BssECI	CCNNGG	3 cut(s)	551, 785, 1274
BssMI	GATC	5 cut(s)	29, 121, 358, 480, 781
Bst2UI	CCWGG	4 cut(s)	234, 552, 558, 646
Bst4CI	ACNGT	7 cut(s)	367, 517, 743, 776, 952, 1238, 1247
BstC8I	GCNNGC	4 cut(s)	576, 757, 1072, 1131
BstDEI	CTNAG	4 cut(s)	19, 44, 817, 1316
BstDSI	CCRYGG	1 cut(s)	1274
BstF5I	GGATG	4 cut(s)	157, 254, 1006, 1211
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	3 cut(s)	118, 232, 1153
BstKTI	GATC	5 cut(s)	32, 124, 361, 483, 784
BstMBI	GATC	5 cut(s)	29, 121, 358, 480, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 913, 1159
BstNI	CCWGG	4 cut(s)	234, 552, 558, 646
BstNSI	RCATGY	2 cut(s)	759, 911
BstSCI	CCNGG	6 cut(s)	232, 382, 550, 556, 644, 784
BstSFI	CTRYAG	3 cut(s)	99, 495, 828
BstV1I	GCAGC	5 cut(s)	60, 404, 481, 590, 779
BstX2I	RGATCY	3 cut(s)	29, 358, 781
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	3 cut(s)	29, 358, 781
BsuRI	GGCC	1 cut(s)	556
BtgI	CCRYGG	1 cut(s)	1274
BtsCI	GGATG	4 cut(s)	157, 254, 1006, 1211
BtsIMutI	CAGTG	6 cut(s)	17, 24, 363, 490, 875, 897
BveI	ACCTGC	1 cut(s)	824
Cac8I	GCNNGC	4 cut(s)	576, 757, 1072, 1131
CaiI	CAGNNNCTG	3 cut(s)	26, 557, 839
CfoI	GCGC	3 cut(s)	118, 232, 1153
Cfr13I	GGNCC	3 cut(s)	554, 865, 1136
CseI	GACGC	1 cut(s)	1170
Csp6I	GTAC	5 cut(s)	338, 777, 814, 873, 931
CviAII	CATG	8 cut(s)	255, 283, 567, 637, 756, 908, 1126, 1252
CviQI	GTAC	5 cut(s)	338, 777, 814, 873, 931
DdeI	CTNAG	4 cut(s)	19, 44, 817, 1316
DpnI	GATC	5 cut(s)	31, 123, 360, 482, 783
DpnII	GATC	5 cut(s)	29, 121, 358, 480, 781
Eco47I	GGWCC	2 cut(s)	865, 1136
Eco57I	CTGAAG	1 cut(s)	807
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRII	CCWGG	4 cut(s)	232, 550, 556, 644
FaeI	CATG	8 cut(s)	258, 286, 570, 640, 759, 911, 1129, 1255
FatI	CATG	8 cut(s)	254, 282, 566, 636, 755, 907, 1125, 1251
FauNDI	CATATG	1 cut(s)	882
Fnu4HI	GCNGC	5 cut(s)	49, 418, 495, 579, 793
FokI	GGATG	4 cut(s)	164, 261, 993, 1218
Fsp4HI	GCNGC	5 cut(s)	49, 418, 495, 579, 793
FspBI	CTAG	2 cut(s)	677, 1296
FspI	TGCGCA	1 cut(s)	1152
GlaI	GCGC	3 cut(s)	117, 231, 1152
GluI	GCNGC	5 cut(s)	49, 418, 495, 579, 793
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	3 cut(s)	298, 955, 1245
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	3 cut(s)	384, 785, 1322
HgaI	GACGC	1 cut(s)	1170
HhaI	GCGC	3 cut(s)	118, 232, 1153
Hin1II	CATG	8 cut(s)	258, 286, 570, 640, 759, 911, 1129, 1255
Hin6I	GCGC	3 cut(s)	116, 230, 1151
HinP1I	GCGC	3 cut(s)	116, 230, 1151
HincII	GTYRAC	1 cut(s)	1185
HindII	GTYRAC	1 cut(s)	1185
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	6 cut(s)	5, 166, 806, 897, 1060, 1101
HpaII	CCGG	3 cut(s)	384, 785, 1322
HphI	GGTGA	3 cut(s)	46, 952, 1250
Hpy166II	GTNNAC	3 cut(s)	739, 873, 1185
Hpy188I	TCNGA	2 cut(s)	1159, 1173
Hpy188III	TCNNGA	7 cut(s)	170, 277, 321, 478, 840, 988, 1262
Hpy8I	GTNNAC	3 cut(s)	739, 873, 1185
HpyAV	CCTTC	4 cut(s)	259, 349, 727, 1215
HpyCH4III	ACNGT	7 cut(s)	367, 517, 743, 776, 952, 1238, 1247
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	8 cut(s)	410, 420, 436, 497, 660, 755, 1088, 1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 913, 1159
HpyF3I	CTNAG	4 cut(s)	19, 44, 817, 1316
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	8 cut(s)	258, 286, 570, 640, 759, 911, 1129, 1255
HspAI	GCGC	3 cut(s)	116, 230, 1151
Kzo9I	GATC	5 cut(s)	29, 121, 358, 480, 781
LmnI	GCTCC	3 cut(s)	279, 290, 789
Lsp1109I	GCAGC	5 cut(s)	60, 404, 481, 590, 779
LweI	GCATC	4 cut(s)	103, 1168, 1255, 1349
MaeI	CTAG	2 cut(s)	677, 1296
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	5 cut(s)	190, 378, 652, 946, 952
MalI	GATC	5 cut(s)	31, 123, 360, 482, 783
MboI	GATC	5 cut(s)	29, 121, 358, 480, 781
MboII	GAAGA	1 cut(s)	633
MflI	RGATCY	3 cut(s)	29, 358, 781
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	8 cut(s)	412, 671, 853, 919, 958, 964, 1021, 1045
MlyI	GAGTC	6 cut(s)	14, 160, 800, 906, 1054, 1110
MmeI	TCCRAC	2 cut(s)	143, 218
MnlI	CCTC	7 cut(s)	26, 95, 724, 930, 1149, 1227, 1269
MseI	TTAA	4 cut(s)	144, 605, 1044, 1233
MslI	CAYNNNNRTG	2 cut(s)	368, 906
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	3 cut(s)	384, 785, 1322
MspR9I	CCNGG	6 cut(s)	234, 384, 552, 558, 646, 786
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	4 cut(s)	234, 552, 558, 646
MwoI	GCNNNNNNNGC	3 cut(s)	113, 913, 1159
NciI	CCSGG	2 cut(s)	384, 786
NdeI	CATATG	1 cut(s)	882
NdeII	GATC	5 cut(s)	29, 121, 358, 480, 781
NlaIII	CATG	8 cut(s)	258, 286, 570, 640, 759, 911, 1129, 1255
NlaIV	GGNNCC	3 cut(s)	31, 360, 502
NsbI	TGCGCA	1 cut(s)	1152
NspI	RCATGY	2 cut(s)	759, 911
OliI	CACNNNNGTG	1 cut(s)	368
PaeI	GCATGC	1 cut(s)	759
PctI	GAATGC	1 cut(s)	466
PflMI	CCANNNNNTGG	2 cut(s)	147, 557
PkrI	GCNGC	5 cut(s)	50, 419, 496, 580, 794
PleI	GAGTC	6 cut(s)	13, 160, 800, 905, 1054, 1109
PpsI	GAGTC	6 cut(s)	13, 160, 800, 905, 1054, 1109
PsiI	TTATAA	3 cut(s)	396, 1113, 1328
Psp6I	CCWGG	4 cut(s)	232, 550, 556, 644
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	4 cut(s)	232, 550, 556, 644
PspN4I	GGNNCC	3 cut(s)	31, 360, 502
PspPI	GGNCC	3 cut(s)	554, 865, 1136
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	3 cut(s)	26, 557, 839
PsuI	RGATCY	3 cut(s)	29, 358, 781
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	5 cut(s)	339, 778, 815, 874, 932
RsaNI	GTAC	5 cut(s)	338, 777, 814, 873, 931
RseI	CAYNNNNRTG	2 cut(s)	368, 906
SaqAI	TTAA	4 cut(s)	144, 605, 1044, 1233
SatI	GCNGC	5 cut(s)	49, 418, 495, 579, 793
Sau3AI	GATC	5 cut(s)	29, 121, 358, 480, 781
Sau96I	GGNCC	3 cut(s)	554, 865, 1136
ScaI	AGTACT	1 cut(s)	932
SchI	GAGTC	6 cut(s)	14, 160, 800, 906, 1054, 1110
ScrFI	CCNGG	6 cut(s)	234, 384, 552, 558, 646, 786
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	4 cut(s)	103, 1168, 1255, 1349
SfcI	CTRYAG	3 cut(s)	99, 495, 828
SinI	GGWCC	2 cut(s)	865, 1136
SmiMI	CAYNNNNRTG	2 cut(s)	368, 906
SphI	GCATGC	1 cut(s)	759
Sse9I	AATT	8 cut(s)	412, 671, 853, 919, 958, 964, 1021, 1045
SsiI	CCGC	1 cut(s)	759
SspI	AATATT	2 cut(s)	136, 994
SspMI	CTAG	2 cut(s)	677, 1296
StyD4I	CCNGG	6 cut(s)	232, 382, 550, 556, 644, 784
TaaI	ACNGT	7 cut(s)	367, 517, 743, 776, 952, 1238, 1247
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	1017, 1219
TasI	AATT	8 cut(s)	412, 671, 853, 919, 958, 964, 1021, 1045
TatI	WGTACW	2 cut(s)	776, 930
Tru1I	TTAA	4 cut(s)	144, 605, 1044, 1233
Tru9I	TTAA	4 cut(s)	144, 605, 1044, 1233
TscAI	CASTG	6 cut(s)	17, 31, 370, 490, 875, 897
TseI	GCWGC	5 cut(s)	48, 417, 494, 578, 792
TspDTI	ATGAA	3 cut(s)	462, 555, 989
TspGWI	ACGGA	3 cut(s)	801, 849, 1263
TspRI	CASTG	6 cut(s)	17, 31, 370, 490, 875, 897
Van91I	CCANNNNNTGG	2 cut(s)	147, 557
VpaK11BI	GGWCC	2 cut(s)	865, 1136
XapI	RAATTY	1 cut(s)	958
XceI	RCATGY	2 cut(s)	759, 911
XspI	CTAG	2 cut(s)	677, 1296
ZrmI	AGTACT	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.