MD06G1203700.v1.1

COBRA-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
33823177 .. 33826355
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1203700.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGGAGCCTCAGTGCTTCTCAGCCGTTGGATCCATGGCAAAGCTGACCAGCTTCACCATTCTGCTCGTCTTCTTGCTTTCCTGCTTCACTTTTACTTCTACAGAGGCCTATGATGCTCTTGATCCAAATGGGAATATTACGATTAAATGGGATGTCATCAGTTGGACTCCGGATGGTTATGTTGCTGTAGTTACAATGTTTAACTTCCAGCAGTATCGGCATATACAAGCGCCAGGTTGGACATTGGGATGGACATGGGCAAAAAAGGAAGTAATCTGGAGCATGGTGGGAGCACAAGCAACAGAGCAAGGGGATTGCTCGAAATACAAAGGGAACGTCCCACATTGCTGTAAGAAGGATCCCACTGTTGTGGATTTGTTGCCAGGAACCCCCTACAATCAGCAGATTGCAAACTGCTGCAAGGGTGGAGTGATGCAATCATGGATCCAGGACCCAGACAATGCCATAAGTTCATTTCAGATCAGTGTGGGTGCTGCTGGAACAACTAACAAAACAGTCAGACTGCCGAAAAACTTCACATTGAAAGCACCGGGGCCTGGATATTCTTGTGGGATAGCAAAGATTGTTAAACCAACGAGATTTCTAACGTCGGACAAAAGGAGATGGACCCAAGCCATGATGACCTGGAACGTTACTTGCACGTACTCGCAATTCCTAGCTCAAAAGACACCCACATGTTGTGTGTCACTGTCTTCCTTCTATAATCAAACCATCGTGAGTTGTCCCACTTGTGCGTGTGGCTGTCAGAACAACGCTACAGATCCAGGAAGCTGCGTAGAGCCAAACAATCCATACTTGGCTTCAGCTGTATCTGGTTCCGGGAAATCTACTAATACACCTCTTGTCCAGTGTACCAGTCATATGTGTCCCATCCGAGTCCATTGGCATGTTAAGCTCAATTACAAGGAGTACTGGAGGGTGAAAGTGACAATTACAAATTTCAATTACAGAATGAACTACACGCTGTGGAATCTTGTCGTGCAACATCCGAACTTTGATAATTTGACCAAGATTTTCAGTTTCAATTACAAATCATTAACTCCTTATGTTGGCTTAAATGATACAGCCATGTTGTGGGGAGTAAAGTTTTATAACGATTTCCTCTCGCAAGCTGGTCCCCTTGGAAACGTGCAGTCAGAGCTCCTATTTCGAAAGGATACATCAACTTTTACTTTCGAAAAGGGTTGGGCTTTCCCTCGAAGGATTTATTTCAACGGAGACAACTGTGTCATGCCACCTCCAGATTCCTACCCATGGCTGCCTAATGCCAGTCCCAAACGAATCATTAGCATACTTAGTCCAGTCATGACCGCCTTTGCATCTCTGGTATTCTTATTGGCTTATGCATAG

Protein Analysis

457

Amino Acids

51.03

Weight (kDa)

8.92

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 60 - 223 4.9e-69 COBRA-like protein
COB_C PF25079 232 - 425 1e-61 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60920 AT5G60920
fragaria_vesca FvH4_5g13550
malus_domestica MD06G1203700.v1.1 MD14G1214800.v1.1
prunus_persica Prupe.5G207800_v2.0.a1
pyrus_communis pycom06g18190 pycom14g17790
rosa_chinensis RchiOBHm_Chr7g0183381
rosa_laevigata RLG00000005051
rosa_multiflora Rmu_sc0000951.1_g000012
rosa_roxburghii Rroxscaffold_3G00270490
rosa_rugosa Rorug06G0457600
rosa_samantha Rh7AG058700 Rh7BG058700 Rh7DG058400
rosa_wichuraiana Rw7G004830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AasI GACNNNNNNGTC 1 cut(s) 1247
AccB7I CCANNNNNTGG 1 cut(s) 1095
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 1 cut(s) 1332
AclI AACGTT 1 cut(s) 651
AclWI GGATC 8 cut(s) 24, 37, 116, 353, 366, 439, 452, 776
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 1 cut(s) 807
AdeI CACNNNGTG 1 cut(s) 987
AfaI GTAC 3 cut(s) 665, 874, 932
AfiI CCNNNNNNNGG 4 cut(s) 557, 1070, 1095, 1275
AflIII ACRYGT 1 cut(s) 695
AgsI TTSAA 4 cut(s) 544, 964, 1045, 1234
AjnI CCWGG 6 cut(s) 232, 382, 447, 556, 644, 784
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 8 cut(s) 43, 51, 680, 792, 827, 916, 1133, 1162
AluI AGCT 8 cut(s) 43, 51, 680, 792, 827, 916, 1133, 1162
Alw21I GWGCWC 2 cut(s) 295, 1164
Alw26I GTCTC 1 cut(s) 1233
AlwI GGATC 8 cut(s) 24, 37, 116, 353, 366, 439, 452, 776
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 2 cut(s) 105, 554
ApeKI GCWGC 4 cut(s) 417, 494, 792, 1279
ApoI RAATTY 1 cut(s) 958
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
Asp700I GAANNNNTTC 1 cut(s) 533
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 4 cut(s) 451, 554, 627, 1136
AsuC2I CCSGG 2 cut(s) 552, 841
AsuHPI GGTGA 2 cut(s) 46, 952
AsuII TTCGAA 2 cut(s) 1171, 1197
AvaII GGWCC 3 cut(s) 451, 627, 1136
BamHI GGATCC 3 cut(s) 29, 358, 444
BanII GRGCYC 1 cut(s) 1164
BbsI GAAGAC 2 cut(s) 61, 705
Bbv12I GWGCWC 2 cut(s) 295, 1164
BbvI GCAGC 4 cut(s) 404, 481, 779, 1266
BccI CCATC 5 cut(s) 167, 243, 618, 740, 899
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 6 cut(s) 234, 384, 449, 558, 646, 786
BciVI GTATCC 1 cut(s) 1171
BcnI CCSGG 2 cut(s) 552, 841
BcoDI GTCTC 1 cut(s) 1233
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 3 cut(s) 99, 186, 777
BfoI RGCGCY 1 cut(s) 233
BfuI GTATCC 1 cut(s) 1171
BisI GCNGC 4 cut(s) 418, 495, 793, 1280
BlsI GCNGC 4 cut(s) 419, 496, 794, 1281
BmcAI AGTACT 1 cut(s) 932
Bme1390I CCNGG 8 cut(s) 234, 384, 449, 552, 558, 646, 786, 841
Bme18I GGWCC 3 cut(s) 451, 627, 1136
BmgT120I GGNCC 4 cut(s) 451, 554, 627, 1136
BmrFI CCNGG 8 cut(s) 234, 384, 449, 552, 558, 646, 786, 841
BmsI GCATC 3 cut(s) 103, 423, 1349
BpiI GAAGAC 2 cut(s) 61, 705
BpmI CTGGAG 3 cut(s) 298, 955, 1245
Bpu14I TTCGAA 2 cut(s) 1171, 1197
BpuMI CCSGG 2 cut(s) 552, 841
BsaAI YACGTR 1 cut(s) 663
BsaJI CCNNGG 4 cut(s) 33, 551, 1141, 1274
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 557, 1070, 1095, 1275
Bse1I ACTGG 5 cut(s) 868, 876, 938, 1290, 1322
Bse3DI GCAATG 1 cut(s) 343
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 6 cut(s) 234, 384, 449, 558, 646, 786
BseDI CCNNGG 4 cut(s) 33, 551, 1141, 1274
BseGI GGATG 5 cut(s) 157, 178, 254, 891, 1006
BseLI CCNNNNNNNGG 4 cut(s) 557, 1070, 1095, 1275
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 23, 33
BseNI ACTGG 5 cut(s) 868, 876, 938, 1290, 1322
BseXI GCAGC 4 cut(s) 404, 481, 779, 1266
BsgI GTGCAG 1 cut(s) 1172
BshFI GGCC 2 cut(s) 107, 556
BsiHKAI GWGCWC 2 cut(s) 295, 1164
BsiSI CCGG 3 cut(s) 170, 551, 840
BslFI GGGAC 5 cut(s) 323, 729, 873, 1122, 1278
BslI CCNNNNNNNGG 4 cut(s) 557, 1070, 1095, 1275
BsmAI GTCTC 1 cut(s) 1233
BsmFI GGGAC 5 cut(s) 323, 729, 873, 1122, 1278
BsnI GGCC 2 cut(s) 107, 556
Bsp119I TTCGAA 2 cut(s) 1171, 1197
Bsp1286I GDGCHC 2 cut(s) 295, 1164
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 6 cut(s) 29, 121, 358, 444, 480, 781
Bsp19I CCATGG 2 cut(s) 33, 1274
BspACI CCGC 1 cut(s) 1332
BspANI GGCC 2 cut(s) 107, 556
BspCNI CTCAG 2 cut(s) 22, 32
BspEI TCCGGA 1 cut(s) 169
BspHI TCATGA 1 cut(s) 1326
BspPI GGATC 8 cut(s) 24, 37, 116, 353, 366, 439, 452, 776
BspT104I TTCGAA 2 cut(s) 1171, 1197
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 5 cut(s) 868, 876, 938, 1290, 1322
BssECI CCNNGG 4 cut(s) 33, 551, 1141, 1274
BssMI GATC 6 cut(s) 29, 121, 358, 444, 480, 781
BssT1I CCWWGG 3 cut(s) 33, 1141, 1274
Bst2UI CCWGG 6 cut(s) 234, 384, 449, 558, 646, 786
Bst4CI ACNGT 4 cut(s) 367, 517, 711, 1247
BstBAI YACGTR 1 cut(s) 663
BstBI TTCGAA 2 cut(s) 1171, 1197
BstC8I GCNNGC 1 cut(s) 1131
BstDEI CTNAG 3 cut(s) 9, 19, 1316
BstDSI CCRYGG 2 cut(s) 33, 1274
BstF5I GGATG 5 cut(s) 157, 178, 254, 891, 1006
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 6 cut(s) 32, 124, 361, 447, 483, 784
BstMAI GTCTC 1 cut(s) 1233
BstMBI GATC 6 cut(s) 29, 121, 358, 444, 480, 781
BstMWI GCNNNNNNNGC 4 cut(s) 113, 217, 913, 1159
BstNI CCWGG 6 cut(s) 234, 384, 449, 558, 646, 786
BstNSI RCATGY 2 cut(s) 699, 911
BstSCI CCNGG 8 cut(s) 232, 382, 447, 550, 556, 644, 784, 839
BstSFI CTRYAG 3 cut(s) 99, 186, 777
BstV1I GCAGC 4 cut(s) 404, 481, 779, 1266
BstV2I GAAGAC 2 cut(s) 61, 705
BstX2I RGATCY 4 cut(s) 29, 358, 444, 781
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 4 cut(s) 29, 358, 444, 781
BsuI GTATCC 1 cut(s) 1171
BsuRI GGCC 2 cut(s) 107, 556
BtgI CCRYGG 2 cut(s) 33, 1274
BtsCI GGATG 5 cut(s) 157, 178, 254, 891, 1006
BtsIMutI CAGTG 5 cut(s) 17, 363, 490, 707, 875
Cac8I GCNNGC 1 cut(s) 1131
CciI TCATGA 1 cut(s) 1326
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 4 cut(s) 451, 554, 627, 1136
Csp6I GTAC 3 cut(s) 664, 873, 931
CviQI GTAC 3 cut(s) 664, 873, 931
DdeI CTNAG 3 cut(s) 9, 19, 1316
DpnI GATC 6 cut(s) 31, 123, 360, 446, 482, 783
DpnII GATC 6 cut(s) 29, 121, 358, 444, 480, 781
DraIII CACNNNGTG 1 cut(s) 987
DrdI GACNNNNNNGTC 1 cut(s) 1247
DseDI GACNNNNNNGTC 1 cut(s) 1247
Ecl136II GAGCTC 1 cut(s) 1162
Eco130I CCWWGG 3 cut(s) 33, 1141, 1274
Eco147I AGGCCT 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 1164
Eco47I GGWCC 3 cut(s) 451, 627, 1136
Eco53kI GAGCTC 1 cut(s) 1162
Eco57I CTGAAG 1 cut(s) 807
EcoICRI GAGCTC 1 cut(s) 1162
EcoO109I RGGNCCY 2 cut(s) 451, 554
EcoRII CCWGG 6 cut(s) 232, 382, 447, 556, 644, 784
EcoT14I CCWWGG 3 cut(s) 33, 1141, 1274
EcoT22I ATGCAT 1 cut(s) 1369
EcoT38I GRGCYC 1 cut(s) 1164
ErhI CCWWGG 3 cut(s) 33, 1141, 1274
FaqI GGGAC 5 cut(s) 323, 729, 873, 1122, 1278
FauNDI CATATG 1 cut(s) 882
Fnu4HI GCNGC 4 cut(s) 418, 495, 793, 1280
FokI GGATG 5 cut(s) 164, 185, 261, 878, 993
FriOI GRGCYC 1 cut(s) 1164
Fsp4HI GCNGC 4 cut(s) 418, 495, 793, 1280
FspBI CTAG 1 cut(s) 677
GlaI GCGC 1 cut(s) 231
GluI GCNGC 4 cut(s) 418, 495, 793, 1280
GsuI CTGGAG 3 cut(s) 298, 955, 1245
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 2 cut(s) 107, 556
HapII CCGG 3 cut(s) 170, 551, 840
HhaI GCGC 1 cut(s) 232
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 5 cut(s) 166, 897, 991, 1265, 1302
HpaII CCGG 3 cut(s) 170, 551, 840
HphI GGTGA 2 cut(s) 46, 952
Hpy166II GTNNAC 1 cut(s) 873
Hpy188I TCNGA 7 cut(s) 480, 521, 613, 768, 896, 1011, 1159
Hpy188III TCNNGA 6 cut(s) 119, 170, 277, 736, 1262, 1327
Hpy8I GTNNAC 1 cut(s) 873
Hpy99I CGWCG 1 cut(s) 613
HpyAV CCTTC 3 cut(s) 349, 727, 1215
HpyCH4III ACNGT 4 cut(s) 367, 517, 711, 1247
HpyCH4IV ACGT 5 cut(s) 336, 608, 651, 662, 1149
HpyCH4V TGCA 8 cut(s) 410, 420, 436, 660, 1003, 1153, 1340, 1367
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 217, 913, 1159
HpyF3I CTNAG 3 cut(s) 9, 19, 1316
HpySE526I ACGT 5 cut(s) 336, 608, 651, 662, 1149
HspAI GCGC 1 cut(s) 230
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 6 cut(s) 29, 121, 358, 444, 480, 781
LmnI GCTCC 4 cut(s) 4, 279, 290, 1167
Lsp1109I GCAGC 4 cut(s) 404, 481, 779, 1266
LweI GCATC 3 cut(s) 103, 423, 1349
MaeI CTAG 1 cut(s) 677
MaeII ACGT 5 cut(s) 336, 608, 651, 662, 1149
MaeIII GTNAC 4 cut(s) 190, 652, 705, 946
MalI GATC 6 cut(s) 31, 123, 360, 446, 482, 783
MboI GATC 6 cut(s) 29, 121, 358, 444, 480, 781
MboII GAAGA 2 cut(s) 61, 705
MflI RGATCY 4 cut(s) 29, 358, 444, 781
MhlI GDGCHC 2 cut(s) 295, 1164
MluCI AATT 7 cut(s) 671, 919, 951, 958, 964, 1021, 1045
MlyI GAGTC 2 cut(s) 160, 906
MmeI TCCRAC 4 cut(s) 7, 143, 218, 591
MnlI CCTC 7 cut(s) 18, 97, 870, 930, 1133, 1227, 1269
Mph1103I ATGCAT 1 cut(s) 1369
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 6 cut(s) 144, 201, 588, 912, 1058, 1076
MslI CAYNNNNRTG 4 cut(s) 247, 368, 694, 906
MspA1I CMGCKG 1 cut(s) 827
MspI CCGG 3 cut(s) 170, 551, 840
MspR9I CCNGG 8 cut(s) 234, 384, 449, 552, 558, 646, 786, 841
MvaI CCWGG 6 cut(s) 234, 384, 449, 558, 646, 786
MwoI GCNNNNNNNGC 4 cut(s) 113, 217, 913, 1159
NciI CCSGG 2 cut(s) 552, 841
NcoI CCATGG 2 cut(s) 33, 1274
NdeI CATATG 1 cut(s) 882
NdeII GATC 6 cut(s) 29, 121, 358, 444, 480, 781
NmuCI GTSAC 2 cut(s) 705, 946
NsiI ATGCAT 1 cut(s) 1369
NspI RCATGY 2 cut(s) 699, 911
NspV TTCGAA 2 cut(s) 1171, 1197
OliI CACNNNNGTG 1 cut(s) 368
PagI TCATGA 1 cut(s) 1326
PceI AGGCCT 1 cut(s) 107
PciI ACATGT 1 cut(s) 695
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 3 cut(s) 991, 1265, 1302
PflMI CCANNNNNTGG 1 cut(s) 1095
PfoI TCCNGGA 3 cut(s) 447, 784, 839
PkrI GCNGC 4 cut(s) 419, 496, 794, 1281
PleI GAGTC 2 cut(s) 160, 905
PpsI GAGTC 2 cut(s) 160, 905
Ppu21I YACGTR 1 cut(s) 663
PpuMI RGGWCCY 1 cut(s) 451
PscI ACATGT 1 cut(s) 695
PsiI TTATAA 1 cut(s) 1113
Psp124BI GAGCTC 1 cut(s) 1164
Psp1406I AACGTT 1 cut(s) 651
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 6 cut(s) 232, 382, 447, 556, 644, 784
PspGI CCWGG 6 cut(s) 232, 382, 447, 556, 644, 784
PspPI GGNCC 4 cut(s) 451, 554, 627, 1136
PspPPI RGGWCCY 1 cut(s) 451
PsuI RGATCY 4 cut(s) 29, 358, 444, 781
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 3 cut(s) 665, 874, 932
RsaNI GTAC 3 cut(s) 664, 873, 931
RseI CAYNNNNRTG 4 cut(s) 247, 368, 694, 906
SacI GAGCTC 1 cut(s) 1164
SaqAI TTAA 6 cut(s) 144, 201, 588, 912, 1058, 1076
SatI GCNGC 4 cut(s) 418, 495, 793, 1280
Sau3AI GATC 6 cut(s) 29, 121, 358, 444, 480, 781
Sau96I GGNCC 4 cut(s) 451, 554, 627, 1136
ScaI AGTACT 1 cut(s) 932
SchI GAGTC 2 cut(s) 160, 906
ScrFI CCNGG 8 cut(s) 234, 384, 449, 552, 558, 646, 786, 841
SduI GDGCHC 2 cut(s) 295, 1164
SfaNI GCATC 3 cut(s) 103, 423, 1349
SfcI CTRYAG 3 cut(s) 99, 186, 777
SfuI TTCGAA 2 cut(s) 1171, 1197
SinI GGWCC 3 cut(s) 451, 627, 1136
SmiMI CAYNNNNRTG 4 cut(s) 247, 368, 694, 906
Sse9I AATT 7 cut(s) 671, 919, 951, 958, 964, 1021, 1045
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 1 cut(s) 1332
SspI AATATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 677
SstI GAGCTC 1 cut(s) 1164
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 8 cut(s) 232, 382, 447, 550, 556, 644, 784, 839
StyI CCWWGG 3 cut(s) 33, 1141, 1274
TaaI ACNGT 4 cut(s) 367, 517, 711, 1247
TaiI ACGT 5 cut(s) 339, 611, 654, 665, 1152
TaqI TCGA 4 cut(s) 320, 1171, 1197, 1219
TasI AATT 7 cut(s) 671, 919, 951, 958, 964, 1021, 1045
TatI WGTACW 1 cut(s) 930
TfiI GAWTC 3 cut(s) 991, 1265, 1302
Tru1I TTAA 6 cut(s) 144, 201, 588, 912, 1058, 1076
Tru9I TTAA 6 cut(s) 144, 201, 588, 912, 1058, 1076
TscAI CASTG 5 cut(s) 17, 370, 490, 714, 875
TseFI GTSAC 2 cut(s) 705, 946
TseI GCWGC 4 cut(s) 417, 494, 792, 1279
Tsp45I GTSAC 2 cut(s) 705, 946
TspDTI ATGAA 2 cut(s) 462, 989
TspGWI ACGGA 1 cut(s) 1251
TspRI CASTG 5 cut(s) 17, 370, 490, 714, 875
Van91I CCANNNNNTGG 1 cut(s) 1095
VpaK11BI GGWCC 3 cut(s) 451, 627, 1136
XapI RAATTY 1 cut(s) 958
XceI RCATGY 2 cut(s) 699, 911
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 1 cut(s) 677
ZrmI AGTACT 1 cut(s) 932
Zsp2I ATGCAT 1 cut(s) 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.