Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013790

Physical Location & Seq

Genomic Coordinates Reverse (-)

63062558 .. 63065656

Gene Structure 3099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAGTCCCAGTGCCTCTCAGCCACTGGATCCATAGCTAAACTCAGCAGCTTCACCATTCTGCTTTTATTTTTGGTTTCCTGCCTCACTTTCACTTCTACAGAAGCTTATGATGCGCTTGATCCACTTGGGAATATCACCATTAAATGGGATGTCATTAGCTGGACTCCTGATGGATATGTTGCTGTTGTTACAATGTTCAACTTCCAGCAGTATCGCCATATACAAGCGCCGGGTTGGACGTTAGGATGGACATGGGCAAAGAAGGAAGTAATCTGGAGCATGGTGGGGGCACAAACCACCGAGCAAGGGGACTGTTCAAGATACAAAGGCAATGTACCACATTGCTGTAAGAAGGATCCCACAGTTGTGGATTTGTTACCCGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGCAGGGGTTATGCAATCATATATCCAAGACCCAGCGAATGCTGTGAGTTCATTCCAGATCAGTGTGGGTGCTGCAGGAACCACTAACAAGACTGTTAGACTTCCTAAAAACTTCACATTGAAAGCACCAGGGCCTGGATATTCATGTGGGCGAGCAGCGATTGTCAAGCCAACCAGATATTTAACAGCAGATAAAAGAAGAATGACCCAAGCCATGAATCCCGGGAGCTGCGTAGAGCCAGACTCTCCGTACTTAGCTTCAGCTGTAGCAGGTTCTGGAAAAGCTACTAATTCTCCGTTGGTCCAGTGTACCAGCCATATGTGTCCAGTGAGAGTCCATTGGCACGTGAAGCTCAATTACAAGGAGTACTGGAGGGTGAAAGTCACAGTTACAAATTTCAATTACAGAATGAACTACACTCTCTGGAATATTGTTGTTCAACATCCCAACTTCGATAATTTGACCAAGATTTTCAGCTTTAATTACAAGGACTTGACTCCTTATGCTGGCTTGAATGATACTGCAATGTTGTGGGGAGTCAAGTTTTATAATGACTTGCTCATGCAAGCTGGTCCTCTTGGAAATGCGCAGTCAGAGCTTCTATTTCGGAAAGATGCGTCAACTTTTACTTTTGAAAAGGGATGGGCTTTCCCTCGAAGGATTTATTTTAACGGTGATAACTGTGTCATGCCACCTCCAGATGCTTATCCGTGGTTGCCAAATGCCATGTTTCCATCGAGTTCAGTTTGCATTAAAGCTTATGGAAATCCGGTTGATGGGTTCAAATGTATTGGTGCTGTGACCTCTAGCAATACAAGTGGTTCAGGTGCACTCCGGTTTGACTGTCACTACAATATTCTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009505 GO:0009628 GO:0009651 GO:0009664 GO:0009825 GO:0009832 GO:0009897 GO:0009930 GO:0009986 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030198 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042546 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

429

Amino Acids

47.58

Weight (kDa)

8.91

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	60 - 214	1.2e-62	COBRA-like protein
COB_C	PF25079	227 - 378	3.1e-47	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60920 AT5G60920
fragaria_vesca	FvH4_5g13550
malus_domestica	MD06G1203700.v1.1 MD14G1214800.v1.1
prunus_persica	Prupe.5G207800_v2.0.a1
pyrus_communis	pycom06g18190 pycom14g17790
rosa_chinensis	RchiOBHm_Chr7g0183381
rosa_laevigata	RLG00000005051
rosa_multiflora	Rmu_sc0000951.1_g000012
rosa_roxburghii	Rroxscaffold_3G00270490
rosa_rugosa	Rorug06G0457600
rosa_samantha	Rh7AG058700 Rh7BG058700 Rh7DG058400
rosa_wichuraiana	Rw7G004830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	396, 972
Acc16I	TGCGCA	1 cut(s)	1011
Acc36I	ACCTGC	1 cut(s)	683
AccB7I	CCANNNNNTGG	2 cut(s)	147, 557
AclWI	GGATC	5 cut(s)	24, 37, 116, 353, 366
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	1 cut(s)	666
AcvI	CACGTG	1 cut(s)	769
AfaI	GTAC	4 cut(s)	339, 674, 733, 791
AfiI	CCNNNNNNNGG	5 cut(s)	147, 309, 557, 929, 1199
AgsI	TTSAA	8 cut(s)	202, 321, 544, 823, 863, 937, 1058, 1207
AjnI	CCWGG	2 cut(s)	550, 556
AleI	CACNNNNGTG	1 cut(s)	368
Alw21I	GWGCWC	1 cut(s)	1255
Alw44I	GTGCAC	1 cut(s)	1251
AlwI	GGATC	5 cut(s)	24, 37, 116, 353, 366
AlwNI	CAGNNNCTG	3 cut(s)	26, 557, 698
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	1251
ApeKI	GCWGC	5 cut(s)	48, 417, 494, 578, 651
ApoI	RAATTY	1 cut(s)	817
AspLEI	GCGC	3 cut(s)	118, 232, 1012
AspS9I	GGNCC	3 cut(s)	554, 724, 995
AsuC2I	CCSGG	4 cut(s)	234, 384, 645, 646
AsuHPI	GGTGA	4 cut(s)	46, 130, 811, 1109
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	724, 995
BaeGI	GKGCMC	2 cut(s)	295, 1255
BamHI	GGATCC	2 cut(s)	29, 358
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BbrPI	CACGTG	1 cut(s)	769
Bbv12I	GWGCWC	1 cut(s)	1255
BbvI	GCAGC	5 cut(s)	60, 404, 481, 590, 638
BccI	CCATC	5 cut(s)	167, 243, 1059, 1165, 1193
BciT130I	CCWGG	2 cut(s)	552, 558
BcnI	CCSGG	4 cut(s)	234, 384, 645, 646
BfaI	CTAG	1 cut(s)	1230
BfmI	CTRYAG	3 cut(s)	99, 495, 687
BfoI	RGCGCY	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	683
BisI	GCNGC	5 cut(s)	49, 418, 495, 579, 652
BlsI	GCNGC	5 cut(s)	50, 419, 496, 580, 653
BmcAI	AGTACT	1 cut(s)	791
Bme1390I	CCNGG	6 cut(s)	234, 384, 552, 558, 645, 646
Bme18I	GGWCC	2 cut(s)	724, 995
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	3 cut(s)	554, 724, 995
BmiI	GGNNCC	3 cut(s)	31, 360, 502
BmrFI	CCNGG	6 cut(s)	234, 384, 552, 558, 645, 646
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	3 cut(s)	103, 1027, 1114
BmuI	ACTGGG	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpmI	CTGGAG	3 cut(s)	298, 814, 1104
BpuMI	CCSGG	4 cut(s)	234, 384, 645, 646
BsaAI	YACGTR	1 cut(s)	769
BsaBI	GATNNNNATC	1 cut(s)	1128
BsaJI	CCNNGG	3 cut(s)	551, 644, 1133
BsaWI	WCCGGW	2 cut(s)	1192, 1257
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 700, 730
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 309, 557, 929, 1199
Bse1I	ACTGG	5 cut(s)	10, 31, 727, 749, 797
Bse3DI	GCAATG	3 cut(s)	340, 343, 954
Bse8I	GATNNNNATC	1 cut(s)	1128
BseBI	CCWGG	2 cut(s)	552, 558
BseDI	CCNNGG	3 cut(s)	551, 644, 1133
BseGI	GGATG	4 cut(s)	157, 254, 865, 1070
BseJI	GATNNNNATC	1 cut(s)	1128
BseLI	CCNNNNNNNGG	5 cut(s)	147, 309, 557, 929, 1199
BseMI	GCAATG	3 cut(s)	340, 343, 954
BseMII	CTCAG	2 cut(s)	33, 58
BseNI	ACTGG	5 cut(s)	10, 31, 727, 749, 797
BseSI	GKGCMC	2 cut(s)	295, 1255
BseXI	GCAGC	5 cut(s)	60, 404, 481, 590, 638
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	1255
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	5 cut(s)	233, 384, 645, 1193, 1258
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	5 cut(s)	147, 309, 557, 929, 1199
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	556
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	295, 1255
Bsp143I	GATC	4 cut(s)	29, 121, 358, 480
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	2 cut(s)	32, 57
BspLI	GGNNCC	3 cut(s)	31, 360, 502
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	5 cut(s)	24, 37, 116, 353, 366
BsrDI	GCAATG	3 cut(s)	340, 343, 954
BsrI	ACTGG	5 cut(s)	10, 31, 727, 749, 797
BssECI	CCNNGG	3 cut(s)	551, 644, 1133
BssMI	GATC	4 cut(s)	29, 121, 358, 480
Bst2UI	CCWGG	2 cut(s)	552, 558
Bst4CI	ACNGT	7 cut(s)	317, 367, 517, 811, 1097, 1106, 1268
BstBAI	YACGTR	1 cut(s)	769
BstC8I	GCNNGC	3 cut(s)	576, 931, 990
BstDEI	CTNAG	3 cut(s)	19, 44, 676
BstDSI	CCRYGG	1 cut(s)	1133
BstF5I	GGATG	4 cut(s)	157, 254, 865, 1070
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	3 cut(s)	118, 232, 1012
BstKTI	GATC	4 cut(s)	32, 124, 361, 483
BstMBI	GATC	4 cut(s)	29, 121, 358, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 772, 1018
BstNI	CCWGG	2 cut(s)	552, 558
BstSCI	CCNGG	6 cut(s)	232, 382, 550, 556, 643, 644
BstSFI	CTRYAG	3 cut(s)	99, 495, 687
BstSLI	GKGCMC	2 cut(s)	295, 1255
BstV1I	GCAGC	5 cut(s)	60, 404, 481, 590, 638
BstX2I	RGATCY	2 cut(s)	29, 358
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	2 cut(s)	29, 358
BsuRI	GGCC	1 cut(s)	556
BtgI	CCRYGG	1 cut(s)	1133
BtsCI	GGATG	4 cut(s)	157, 254, 865, 1070
BtsIMutI	CAGTG	5 cut(s)	17, 24, 490, 734, 756
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	3 cut(s)	576, 931, 990
CaiI	CAGNNNCTG	3 cut(s)	26, 557, 698
CfoI	GCGC	3 cut(s)	118, 232, 1012
Cfr13I	GGNCC	3 cut(s)	554, 724, 995
Cfr9I	CCCGGG	1 cut(s)	644
CseI	GACGC	1 cut(s)	1029
Csp6I	GTAC	4 cut(s)	338, 673, 732, 790
CspCI	CAANNNNNGTGG	2 cut(s)	1222, 1257
CviAII	CATG	7 cut(s)	255, 283, 567, 637, 985, 1111, 1150
CviQI	GTAC	4 cut(s)	338, 673, 732, 790
DdeI	CTNAG	3 cut(s)	19, 44, 676
DpnI	GATC	4 cut(s)	31, 123, 360, 482
DpnII	GATC	4 cut(s)	29, 121, 358, 480
Eco47I	GGWCC	2 cut(s)	724, 995
Eco57I	CTGAAG	1 cut(s)	666
Eco72I	CACGTG	1 cut(s)	769
Eco88I	CYCGRG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	550, 556
FaeI	CATG	7 cut(s)	258, 286, 570, 640, 988, 1114, 1153
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	7 cut(s)	254, 282, 566, 636, 984, 1110, 1149
FauNDI	CATATG	1 cut(s)	741
Fnu4HI	GCNGC	5 cut(s)	49, 418, 495, 579, 652
FokI	GGATG	4 cut(s)	164, 261, 852, 1077
Fsp4HI	GCNGC	5 cut(s)	49, 418, 495, 579, 652
FspBI	CTAG	1 cut(s)	1230
FspI	TGCGCA	1 cut(s)	1011
GlaI	GCGC	3 cut(s)	117, 231, 1011
GluI	GCNGC	5 cut(s)	49, 418, 495, 579, 652
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	3 cut(s)	298, 814, 1104
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	5 cut(s)	233, 384, 645, 1193, 1258
HgaI	GACGC	1 cut(s)	1029
HhaI	GCGC	3 cut(s)	118, 232, 1012
Hin1II	CATG	7 cut(s)	258, 286, 570, 640, 988, 1114, 1153
Hin6I	GCGC	3 cut(s)	116, 230, 1010
HinP1I	GCGC	3 cut(s)	116, 230, 1010
HincII	GTYRAC	1 cut(s)	1044
HindII	GTYRAC	1 cut(s)	1044
HindIII	AAGCTT	2 cut(s)	105, 1179
HinfI	GANTC	7 cut(s)	5, 166, 640, 665, 756, 919, 960
HpaII	CCGG	5 cut(s)	233, 384, 645, 1193, 1258
HphI	GGTGA	4 cut(s)	46, 130, 811, 1109
Hpy166II	GTNNAC	3 cut(s)	732, 1044, 1253
Hpy188I	TCNGA	2 cut(s)	1018, 1032
Hpy188III	TCNNGA	7 cut(s)	170, 277, 321, 478, 699, 847, 1121
Hpy8I	GTNNAC	3 cut(s)	732, 1044, 1253
HpyAV	CCTTC	3 cut(s)	259, 349, 1074
HpyCH4III	ACNGT	7 cut(s)	317, 367, 517, 811, 1097, 1106, 1268
HpyCH4IV	ACGT	2 cut(s)	242, 768
HpyCH4V	TGCA	8 cut(s)	410, 420, 436, 497, 947, 988, 1173, 1253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 772, 1018
HpyF3I	CTNAG	3 cut(s)	19, 44, 676
HpySE526I	ACGT	2 cut(s)	242, 768
Hsp92II	CATG	7 cut(s)	258, 286, 570, 640, 988, 1114, 1153
HspAI	GCGC	3 cut(s)	116, 230, 1010
Kzo9I	GATC	4 cut(s)	29, 121, 358, 480
LmnI	GCTCC	2 cut(s)	279, 648
Lsp1109I	GCAGC	5 cut(s)	60, 404, 481, 590, 638
LweI	GCATC	3 cut(s)	103, 1027, 1114
MaeI	CTAG	1 cut(s)	1230
MaeII	ACGT	2 cut(s)	242, 768
MaeIII	GTNAC	6 cut(s)	190, 378, 805, 811, 1222, 1268
MalI	GATC	4 cut(s)	31, 123, 360, 482
MboI	GATC	4 cut(s)	29, 121, 358, 480
MboII	GAAGA	1 cut(s)	633
MflI	RGATCY	2 cut(s)	29, 358
MhlI	GDGCHC	2 cut(s)	295, 1255
MluCI	AATT	7 cut(s)	412, 712, 778, 817, 823, 880, 904
MlyI	GAGTC	6 cut(s)	14, 160, 659, 765, 913, 969
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	7 cut(s)	26, 95, 789, 1008, 1086, 1128, 1237
MseI	TTAA	6 cut(s)	144, 605, 903, 1092, 1176, 1288
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	5 cut(s)	233, 384, 645, 1193, 1258
MspR9I	CCNGG	6 cut(s)	234, 384, 552, 558, 645, 646
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	2 cut(s)	552, 558
MwoI	GCNNNNNNNGC	3 cut(s)	113, 772, 1018
NciI	CCSGG	4 cut(s)	234, 384, 645, 646
NdeI	CATATG	1 cut(s)	741
NdeII	GATC	4 cut(s)	29, 121, 358, 480
NlaIII	CATG	7 cut(s)	258, 286, 570, 640, 988, 1114, 1153
NlaIV	GGNNCC	3 cut(s)	31, 360, 502
NmuCI	GTSAC	3 cut(s)	805, 1222, 1268
NsbI	TGCGCA	1 cut(s)	1011
OliI	CACNNNNGTG	1 cut(s)	368
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	640
PflMI	CCANNNNNTGG	2 cut(s)	147, 557
PkrI	GCNGC	5 cut(s)	50, 419, 496, 580, 653
PleI	GAGTC	6 cut(s)	13, 160, 659, 764, 913, 968
PmaCI	CACGTG	1 cut(s)	769
PmlI	CACGTG	1 cut(s)	769
PpsI	GAGTC	6 cut(s)	13, 160, 659, 764, 913, 968
Ppu21I	YACGTR	1 cut(s)	769
PsiI	TTATAA	2 cut(s)	396, 972
Psp6I	CCWGG	2 cut(s)	550, 556
PspCI	CACGTG	1 cut(s)	769
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	2 cut(s)	550, 556
PspN4I	GGNNCC	3 cut(s)	31, 360, 502
PspPI	GGNCC	3 cut(s)	554, 724, 995
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	3 cut(s)	26, 557, 698
PsuI	RGATCY	2 cut(s)	29, 358
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	4 cut(s)	339, 674, 733, 791
RsaNI	GTAC	4 cut(s)	338, 673, 732, 790
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	6 cut(s)	144, 605, 903, 1092, 1176, 1288
SatI	GCNGC	5 cut(s)	49, 418, 495, 579, 652
Sau3AI	GATC	4 cut(s)	29, 121, 358, 480
Sau96I	GGNCC	3 cut(s)	554, 724, 995
ScaI	AGTACT	1 cut(s)	791
SchI	GAGTC	6 cut(s)	14, 160, 659, 765, 913, 969
ScrFI	CCNGG	6 cut(s)	234, 384, 552, 558, 645, 646
SduI	GDGCHC	2 cut(s)	295, 1255
SfaNI	GCATC	3 cut(s)	103, 1027, 1114
SfcI	CTRYAG	3 cut(s)	99, 495, 687
SinI	GGWCC	2 cut(s)	724, 995
SmaI	CCCGGG	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	7 cut(s)	412, 712, 778, 817, 823, 880, 904
SspI	AATATT	2 cut(s)	853, 1279
SspMI	CTAG	1 cut(s)	1230
StyD4I	CCNGG	6 cut(s)	232, 382, 550, 556, 643, 644
TaaI	ACNGT	7 cut(s)	317, 367, 517, 811, 1097, 1106, 1268
TaiI	ACGT	2 cut(s)	245, 771
TaqI	TCGA	3 cut(s)	876, 1078, 1160
TasI	AATT	7 cut(s)	412, 712, 778, 817, 823, 880, 904
TatI	WGTACW	1 cut(s)	789
TfiI	GAWTC	1 cut(s)	640
Tru1I	TTAA	6 cut(s)	144, 605, 903, 1092, 1176, 1288
Tru9I	TTAA	6 cut(s)	144, 605, 903, 1092, 1176, 1288
TscAI	CASTG	5 cut(s)	17, 31, 490, 734, 756
TseFI	GTSAC	3 cut(s)	805, 1222, 1268
TseI	GCWGC	5 cut(s)	48, 417, 494, 578, 651
Tsp45I	GTSAC	3 cut(s)	805, 1222, 1268
TspDTI	ATGAA	4 cut(s)	462, 555, 653, 848
TspGWI	ACGGA	3 cut(s)	660, 708, 1122
TspMI	CCCGGG	1 cut(s)	644
TspRI	CASTG	5 cut(s)	17, 31, 490, 734, 756
Van91I	CCANNNNNTGG	2 cut(s)	147, 557
VneI	GTGCAC	1 cut(s)	1251
VpaK11BI	GGWCC	2 cut(s)	724, 995
XapI	RAATTY	1 cut(s)	817
XmaI	CCCGGG	1 cut(s)	644
XspI	CTAG	1 cut(s)	1230
ZrmI	AGTACT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.