COBRA-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60920 AT5G60920 |
| fragaria_vesca | FvH4_5g13550 |
| malus_domestica | MD06G1203700.v1.1 MD14G1214800.v1.1 |
| prunus_persica | Prupe.5G207800_v2.0.a1 |
| pyrus_communis | pycom06g18190 pycom14g17790 |
| rosa_chinensis | RchiOBHm_Chr7g0183381 |
| rosa_laevigata | RLG00000005051 |
| rosa_multiflora | Rmu_sc0000951.1_g000012 |
| rosa_roxburghii | Rroxscaffold_3G00270490 |
| rosa_rugosa | Rorug06G0457600 |
| rosa_samantha | Rh7AG058700 Rh7BG058700 Rh7DG058400 |
| rosa_wichuraiana | Rw7G004830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 396, 1050, 1113 |
| Acc36I | ACCTGC | 1 cut(s) | 824 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 557 |
| AciI | CCGC | 1 cut(s) | 611 |
| AclWI | GGATC | 8 cut(s) | 24, 37, 116, 353, 366, 439, 446, 452 |
| AcsI | RAATTY | 1 cut(s) | 958 |
| AcuI | CTGAAG | 1 cut(s) | 807 |
| AfaI | GTAC | 4 cut(s) | 339, 778, 874, 932 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 557, 1070, 1222 |
| AgsI | TTSAA | 8 cut(s) | 202, 321, 544, 964, 1004, 1045, 1078, 1199 |
| AjnI | CCWGG | 8 cut(s) | 232, 382, 454, 477, 550, 556, 644, 784 |
| AleI | CACNNNNGTG | 1 cut(s) | 368 |
| Alw21I | GWGCWC | 1 cut(s) | 295 |
| Alw26I | GTCTC | 1 cut(s) | 306 |
| AlwI | GGATC | 8 cut(s) | 24, 37, 116, 353, 366, 439, 446, 452 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 26, 557 |
| AoxI | GGCC | 1 cut(s) | 554 |
| ApeKI | GCWGC | 5 cut(s) | 48, 417, 494, 578, 792 |
| ApoI | RAATTY | 1 cut(s) | 958 |
| AspLEI | GCGC | 2 cut(s) | 118, 232 |
| AspS9I | GGNCC | 4 cut(s) | 554, 627, 865, 1136 |
| AsuHPI | GGTGA | 3 cut(s) | 46, 952, 1250 |
| AvaII | GGWCC | 3 cut(s) | 627, 865, 1136 |
| BamHI | GGATCC | 3 cut(s) | 29, 358, 444 |
| BanII | GRGCYC | 1 cut(s) | 295 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 905, 937 |
| BbsI | GAAGAC | 1 cut(s) | 692 |
| Bbv12I | GWGCWC | 1 cut(s) | 295 |
| BbvI | GCAGC | 5 cut(s) | 60, 404, 481, 590, 779 |
| BccI | CCATC | 4 cut(s) | 167, 243, 618, 1200 |
| BceAI | ACGGC | 1 cut(s) | 170 |
| BciT130I | CCWGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| BciVI | GTATCC | 1 cut(s) | 170 |
| BcoDI | GTCTC | 1 cut(s) | 306 |
| BfaI | CTAG | 2 cut(s) | 876, 1296 |
| BfmI | CTRYAG | 2 cut(s) | 495, 828 |
| BfoI | RGCGCY | 1 cut(s) | 233 |
| BfuAI | ACCTGC | 1 cut(s) | 824 |
| BfuI | GTATCC | 1 cut(s) | 170 |
| BisI | GCNGC | 5 cut(s) | 49, 418, 495, 579, 793 |
| BlsI | GCNGC | 5 cut(s) | 50, 419, 496, 580, 794 |
| BmcAI | AGTACT | 1 cut(s) | 932 |
| Bme1390I | CCNGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| Bme18I | GGWCC | 3 cut(s) | 627, 865, 1136 |
| BmgT120I | GGNCC | 4 cut(s) | 554, 627, 865, 1136 |
| BmiI | GGNNCC | 5 cut(s) | 31, 360, 446, 502, 629 |
| BmrFI | CCNGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| BmrI | ACTGGG | 1 cut(s) | 4 |
| BmsI | GCATC | 3 cut(s) | 103, 1255, 1349 |
| BmuI | ACTGGG | 1 cut(s) | 4 |
| BpiI | GAAGAC | 1 cut(s) | 692 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 791, 823 |
| BpmI | CTGGAG | 3 cut(s) | 298, 955, 1245 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1269 |
| BsaJI | CCNNGG | 4 cut(s) | 455, 551, 785, 1274 |
| BsaWI | WCCGGW | 1 cut(s) | 1321 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 557, 1070, 1222 |
| Bse1I | ACTGG | 6 cut(s) | 10, 31, 868, 890, 938, 1290 |
| Bse3DI | GCAATG | 2 cut(s) | 343, 1095 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1269 |
| BseBI | CCWGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| BseDI | CCNNGG | 4 cut(s) | 455, 551, 785, 1274 |
| BseGI | GGATG | 5 cut(s) | 157, 254, 713, 1006, 1211 |
| BseJI | GATNNNNATC | 1 cut(s) | 1269 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 557, 1070, 1222 |
| BseMI | GCAATG | 2 cut(s) | 343, 1095 |
| BseMII | CTCAG | 4 cut(s) | 33, 58, 294, 695 |
| BseNI | ACTGG | 6 cut(s) | 10, 31, 868, 890, 938, 1290 |
| BseXI | GCAGC | 5 cut(s) | 60, 404, 481, 590, 779 |
| BshFI | GGCC | 1 cut(s) | 556 |
| BsiHKAI | GWGCWC | 1 cut(s) | 295 |
| BsiSI | CCGG | 1 cut(s) | 1322 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 557, 1070, 1222 |
| BsmAI | GTCTC | 1 cut(s) | 306 |
| BsmI | GAATGC | 1 cut(s) | 466 |
| BsnI | GGCC | 1 cut(s) | 556 |
| Bsp1286I | GDGCHC | 1 cut(s) | 295 |
| Bsp143I | GATC | 5 cut(s) | 29, 121, 358, 444, 451 |
| BspACI | CCGC | 1 cut(s) | 611 |
| BspANI | GGCC | 1 cut(s) | 556 |
| BspCNI | CTCAG | 4 cut(s) | 32, 57, 295, 694 |
| BspLI | GGNNCC | 5 cut(s) | 31, 360, 446, 502, 629 |
| BspMAI | CTGCAG | 1 cut(s) | 499 |
| BspMI | ACCTGC | 1 cut(s) | 824 |
| BspPI | GGATC | 8 cut(s) | 24, 37, 116, 353, 366, 439, 446, 452 |
| BspQI | GCTCTTC | 1 cut(s) | 71 |
| BsrDI | GCAATG | 2 cut(s) | 343, 1095 |
| BsrI | ACTGG | 6 cut(s) | 10, 31, 868, 890, 938, 1290 |
| BssECI | CCNNGG | 4 cut(s) | 455, 551, 785, 1274 |
| BssMI | GATC | 5 cut(s) | 29, 121, 358, 444, 451 |
| Bst2UI | CCWGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| Bst4CI | ACNGT | 9 cut(s) | 317, 367, 517, 743, 776, 952, 1155, 1238, 1247 |
| Bst6I | CTCTTC | 1 cut(s) | 71 |
| BstC8I | GCNNGC | 3 cut(s) | 576, 1072, 1131 |
| BstDEI | CTNAG | 7 cut(s) | 19, 44, 303, 676, 681, 817, 1316 |
| BstDSI | CCRYGG | 1 cut(s) | 1274 |
| BstEII | GGTNACC | 1 cut(s) | 1278 |
| BstF5I | GGATG | 5 cut(s) | 157, 254, 713, 1006, 1211 |
| BstH2I | RGCGCY | 1 cut(s) | 233 |
| BstHHI | GCGC | 2 cut(s) | 118, 232 |
| BstKTI | GATC | 5 cut(s) | 32, 124, 361, 447, 454 |
| BstMAI | GTCTC | 1 cut(s) | 306 |
| BstMBI | GATC | 5 cut(s) | 29, 121, 358, 444, 451 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 113, 913 |
| BstNI | CCWGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| BstNSI | RCATGY | 2 cut(s) | 759, 911 |
| BstPI | GGTNACC | 1 cut(s) | 1278 |
| BstSCI | CCNGG | 8 cut(s) | 232, 382, 454, 477, 550, 556, 644, 784 |
| BstSFI | CTRYAG | 2 cut(s) | 495, 828 |
| BstV1I | GCAGC | 5 cut(s) | 60, 404, 481, 590, 779 |
| BstV2I | GAAGAC | 1 cut(s) | 692 |
| BstX2I | RGATCY | 4 cut(s) | 29, 358, 444, 451 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 370 |
| BstYI | RGATCY | 4 cut(s) | 29, 358, 444, 451 |
| BsuI | GTATCC | 1 cut(s) | 170 |
| BsuRI | GGCC | 1 cut(s) | 556 |
| BtgI | CCRYGG | 1 cut(s) | 1274 |
| BtsCI | GGATG | 5 cut(s) | 157, 254, 713, 1006, 1211 |
| BtsIMutI | CAGTG | 6 cut(s) | 17, 24, 300, 490, 875, 897 |
| BveI | ACCTGC | 1 cut(s) | 824 |
| Cac8I | GCNNGC | 3 cut(s) | 576, 1072, 1131 |
| CaiI | CAGNNNCTG | 2 cut(s) | 26, 557 |
| CfoI | GCGC | 2 cut(s) | 118, 232 |
| Cfr13I | GGNCC | 4 cut(s) | 554, 627, 865, 1136 |
| Csp6I | GTAC | 4 cut(s) | 338, 777, 873, 931 |
| CviAII | CATG | 8 cut(s) | 255, 283, 441, 637, 756, 908, 1126, 1252 |
| CviQI | GTAC | 4 cut(s) | 338, 777, 873, 931 |
| DdeI | CTNAG | 7 cut(s) | 19, 44, 303, 676, 681, 817, 1316 |
| DpnI | GATC | 5 cut(s) | 31, 123, 360, 446, 453 |
| DpnII | GATC | 5 cut(s) | 29, 121, 358, 444, 451 |
| Eam1104I | CTCTTC | 1 cut(s) | 71 |
| EarI | CTCTTC | 1 cut(s) | 71 |
| Ecl136II | GAGCTC | 1 cut(s) | 293 |
| Eco24I | GRGCYC | 1 cut(s) | 295 |
| Eco32I | GATATC | 1 cut(s) | 602 |
| Eco47I | GGWCC | 3 cut(s) | 627, 865, 1136 |
| Eco53kI | GAGCTC | 1 cut(s) | 293 |
| Eco57I | CTGAAG | 1 cut(s) | 807 |
| Eco91I | GGTNACC | 1 cut(s) | 1278 |
| EcoICRI | GAGCTC | 1 cut(s) | 293 |
| EcoO109I | RGGNCCY | 1 cut(s) | 554 |
| EcoO65I | GGTNACC | 1 cut(s) | 1278 |
| EcoRII | CCWGG | 8 cut(s) | 232, 382, 454, 477, 550, 556, 644, 784 |
| EcoRV | GATATC | 1 cut(s) | 602 |
| EcoT22I | ATGCAT | 1 cut(s) | 1369 |
| EcoT38I | GRGCYC | 1 cut(s) | 295 |
| FaeI | CATG | 8 cut(s) | 258, 286, 444, 640, 759, 911, 1129, 1255 |
| FatI | CATG | 8 cut(s) | 254, 282, 440, 636, 755, 907, 1125, 1251 |
| FauNDI | CATATG | 1 cut(s) | 882 |
| Fnu4HI | GCNGC | 5 cut(s) | 49, 418, 495, 579, 793 |
| FokI | GGATG | 5 cut(s) | 164, 261, 700, 993, 1218 |
| FriOI | GRGCYC | 1 cut(s) | 295 |
| Fsp4HI | GCNGC | 5 cut(s) | 49, 418, 495, 579, 793 |
| FspBI | CTAG | 2 cut(s) | 876, 1296 |
| GlaI | GCGC | 2 cut(s) | 117, 231 |
| GluI | GCNGC | 5 cut(s) | 49, 418, 495, 579, 793 |
| GsuI | CTGGAG | 3 cut(s) | 298, 955, 1245 |
| HaeII | RGCGCY | 1 cut(s) | 233 |
| HaeIII | GGCC | 1 cut(s) | 556 |
| HapII | CCGG | 1 cut(s) | 1322 |
| HhaI | GCGC | 2 cut(s) | 118, 232 |
| Hin1II | CATG | 8 cut(s) | 258, 286, 444, 640, 759, 911, 1129, 1255 |
| Hin6I | GCGC | 2 cut(s) | 116, 230 |
| HinP1I | GCGC | 2 cut(s) | 116, 230 |
| HincII | GTYRAC | 1 cut(s) | 1185 |
| HindII | GTYRAC | 1 cut(s) | 1185 |
| HindIII | AAGCTT | 1 cut(s) | 105 |
| HinfI | GANTC | 7 cut(s) | 5, 166, 806, 897, 991, 1060, 1101 |
| HpaII | CCGG | 1 cut(s) | 1322 |
| HphI | GGTGA | 3 cut(s) | 46, 952, 1250 |
| Hpy166II | GTNNAC | 3 cut(s) | 739, 873, 1185 |
| Hpy188I | TCNGA | 4 cut(s) | 684, 747, 1159, 1173 |
| Hpy188III | TCNNGA | 6 cut(s) | 139, 170, 277, 321, 988, 1262 |
| Hpy8I | GTNNAC | 3 cut(s) | 739, 873, 1185 |
| HpyAV | CCTTC | 4 cut(s) | 259, 349, 727, 1215 |
| HpyCH4III | ACNGT | 9 cut(s) | 317, 367, 517, 743, 776, 952, 1155, 1238, 1247 |
| HpyCH4IV | ACGT | 5 cut(s) | 135, 180, 242, 336, 1181 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 113, 913 |
| HpyF3I | CTNAG | 7 cut(s) | 19, 44, 303, 676, 681, 817, 1316 |
| HpySE526I | ACGT | 5 cut(s) | 135, 180, 242, 336, 1181 |
| Hsp92II | CATG | 8 cut(s) | 258, 286, 444, 640, 759, 911, 1129, 1255 |
| HspAI | GCGC | 2 cut(s) | 116, 230 |
| Kzo9I | GATC | 5 cut(s) | 29, 121, 358, 444, 451 |
| LguI | GCTCTTC | 1 cut(s) | 71 |
| LmnI | GCTCC | 3 cut(s) | 279, 290, 789 |
| Lsp1109I | GCAGC | 5 cut(s) | 60, 404, 481, 590, 779 |
| LweI | GCATC | 3 cut(s) | 103, 1255, 1349 |
| MaeI | CTAG | 2 cut(s) | 876, 1296 |
| MaeII | ACGT | 5 cut(s) | 135, 180, 242, 336, 1181 |
| MaeIII | GTNAC | 6 cut(s) | 136, 190, 378, 946, 952, 1278 |
| MalI | GATC | 5 cut(s) | 31, 123, 360, 446, 453 |
| MboI | GATC | 5 cut(s) | 29, 121, 358, 444, 451 |
| MboII | GAAGA | 3 cut(s) | 58, 633, 697 |
| MflI | RGATCY | 4 cut(s) | 29, 358, 444, 451 |
| MhlI | GDGCHC | 1 cut(s) | 295 |
| MluCI | AATT | 8 cut(s) | 412, 671, 853, 919, 958, 964, 1021, 1045 |
| MlyI | GAGTC | 6 cut(s) | 14, 160, 800, 906, 1054, 1110 |
| MmeI | TCCRAC | 3 cut(s) | 143, 218, 770 |
| MnlI | CCTC | 7 cut(s) | 26, 91, 95, 419, 930, 1149, 1269 |
| Mph1103I | ATGCAT | 1 cut(s) | 1369 |
| MseI | TTAA | 2 cut(s) | 144, 1233 |
| MslI | CAYNNNNRTG | 2 cut(s) | 368, 906 |
| MspA1I | CMGCKG | 2 cut(s) | 611, 827 |
| MspI | CCGG | 1 cut(s) | 1322 |
| MspR9I | CCNGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| Mva1269I | GAATGC | 1 cut(s) | 466 |
| MvaI | CCWGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 113, 913 |
| NdeI | CATATG | 1 cut(s) | 882 |
| NdeII | GATC | 5 cut(s) | 29, 121, 358, 444, 451 |
| NlaIII | CATG | 8 cut(s) | 258, 286, 444, 640, 759, 911, 1129, 1255 |
| NlaIV | GGNNCC | 5 cut(s) | 31, 360, 446, 502, 629 |
| NmuCI | GTSAC | 2 cut(s) | 136, 946 |
| NsiI | ATGCAT | 1 cut(s) | 1369 |
| NspI | RCATGY | 2 cut(s) | 759, 911 |
| OliI | CACNNNNGTG | 1 cut(s) | 368 |
| PciSI | GCTCTTC | 1 cut(s) | 71 |
| PctI | GAATGC | 1 cut(s) | 466 |
| PfeI | GAWTC | 1 cut(s) | 991 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 557 |
| PkrI | GCNGC | 5 cut(s) | 50, 419, 496, 580, 794 |
| PleI | GAGTC | 6 cut(s) | 13, 160, 800, 905, 1054, 1109 |
| PpsI | GAGTC | 6 cut(s) | 13, 160, 800, 905, 1054, 1109 |
| PsiI | TTATAA | 3 cut(s) | 396, 1050, 1113 |
| Psp124BI | GAGCTC | 1 cut(s) | 295 |
| Psp6I | CCWGG | 8 cut(s) | 232, 382, 454, 477, 550, 556, 644, 784 |
| PspEI | GGTNACC | 1 cut(s) | 1278 |
| PspGI | CCWGG | 8 cut(s) | 232, 382, 454, 477, 550, 556, 644, 784 |
| PspN4I | GGNNCC | 5 cut(s) | 31, 360, 446, 502, 629 |
| PspPI | GGNCC | 4 cut(s) | 554, 627, 865, 1136 |
| PstI | CTGCAG | 1 cut(s) | 499 |
| PstNI | CAGNNNCTG | 2 cut(s) | 26, 557 |
| PsuI | RGATCY | 4 cut(s) | 29, 358, 444, 451 |
| PvuII | CAGCTG | 1 cut(s) | 827 |
| RsaI | GTAC | 4 cut(s) | 339, 778, 874, 932 |
| RsaNI | GTAC | 4 cut(s) | 338, 777, 873, 931 |
| RseI | CAYNNNNRTG | 2 cut(s) | 368, 906 |
| SacI | GAGCTC | 1 cut(s) | 295 |
| SapI | GCTCTTC | 1 cut(s) | 71 |
| SaqAI | TTAA | 2 cut(s) | 144, 1233 |
| SatI | GCNGC | 5 cut(s) | 49, 418, 495, 579, 793 |
| Sau3AI | GATC | 5 cut(s) | 29, 121, 358, 444, 451 |
| Sau96I | GGNCC | 4 cut(s) | 554, 627, 865, 1136 |
| ScaI | AGTACT | 1 cut(s) | 932 |
| SchI | GAGTC | 6 cut(s) | 14, 160, 800, 906, 1054, 1110 |
| ScrFI | CCNGG | 8 cut(s) | 234, 384, 456, 479, 552, 558, 646, 786 |
| SduI | GDGCHC | 1 cut(s) | 295 |
| SfaNI | GCATC | 3 cut(s) | 103, 1255, 1349 |
| SfcI | CTRYAG | 2 cut(s) | 495, 828 |
| SinI | GGWCC | 3 cut(s) | 627, 865, 1136 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 368, 906 |
| Sse9I | AATT | 8 cut(s) | 412, 671, 853, 919, 958, 964, 1021, 1045 |
| SsiI | CCGC | 1 cut(s) | 611 |
| SspI | AATATT | 1 cut(s) | 652 |
| SspMI | CTAG | 2 cut(s) | 876, 1296 |
| SstI | GAGCTC | 1 cut(s) | 295 |
| StyD4I | CCNGG | 8 cut(s) | 232, 382, 454, 477, 550, 556, 644, 784 |
| TaaI | ACNGT | 9 cut(s) | 317, 367, 517, 743, 776, 952, 1155, 1238, 1247 |
| TaiI | ACGT | 5 cut(s) | 138, 183, 245, 339, 1184 |
| TaqI | TCGA | 1 cut(s) | 1017 |
| TasI | AATT | 8 cut(s) | 412, 671, 853, 919, 958, 964, 1021, 1045 |
| TatI | WGTACW | 3 cut(s) | 776, 872, 930 |
| TfiI | GAWTC | 1 cut(s) | 991 |
| Tru1I | TTAA | 2 cut(s) | 144, 1233 |
| Tru9I | TTAA | 2 cut(s) | 144, 1233 |
| TscAI | CASTG | 6 cut(s) | 17, 31, 307, 490, 875, 897 |
| TseFI | GTSAC | 2 cut(s) | 136, 946 |
| TseI | GCWGC | 5 cut(s) | 48, 417, 494, 578, 792 |
| Tsp45I | GTSAC | 2 cut(s) | 136, 946 |
| TspDTI | ATGAA | 2 cut(s) | 462, 989 |
| TspGWI | ACGGA | 1 cut(s) | 1263 |
| TspRI | CASTG | 6 cut(s) | 17, 31, 307, 490, 875, 897 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 557 |
| VpaK11BI | GGWCC | 3 cut(s) | 627, 865, 1136 |
| XapI | RAATTY | 1 cut(s) | 958 |
| XceI | RCATGY | 2 cut(s) | 759, 911 |
| XspI | CTAG | 2 cut(s) | 876, 1296 |
| ZrmI | AGTACT | 1 cut(s) | 932 |
| Zsp2I | ATGCAT | 1 cut(s) | 1369 |