FvH4_5g13550

COBRA-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
7672805 .. 7677101
4297 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13550.t1

Sequence Viewer

Length: 1371 bp
ATGGAGTCCCAGTGCCTCTCAGCCACTGGATCCATAGCTAAACTCAGCAGCTTCACCATTCTGCTCTTCTTTTTGGTTTCCTCCCTCACTTTCACTTCCACAGAAGCTTATGATGCGCTTGATCCACTTGGGAACGTCACGATTAAATGGGATGTCATTAGTTGGACTCCTGATGGATACGTTGCCGTTGTTACAATGTTCAACTTCCAGCAGTATCGTCATATACAAGCGCCAGGTTGGACGTTAGGATGGACATGGGCAAAGAAGGAAGTAATCTGGAGCATGGTGGGAGCTCAAACCACTGAGCAAGGAGACTGTTCAAGATACAAAGGCAACGTACCACATTGCTGTAAGAAGGATCCCACAGTCGTGGATTTGTTACCTGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGGAGGGGTTATGCAATCATGGATCCAAGATCCAGGGAATGCTGTAAGTTCATTCCAGGTCAGTGTGGGTGCTGCAGGAACCACTAACAAGACTGTTAGACTTCCTAAAAACTTCACATTGAAAGCACCAGGGCCTGGATATTCTTGTGGGCGAGCAGCGATTGTCAAGCCAACCAGATATCTAACAGCGGATAAAAGAAGATGGACCCAAGCCATGATGACCTGGAATATTACTTGCACATACTCTCAATTCTTAGCTCAGAAGACACCTACTTGTTGTGTTTCTCTCTCATCCTTCTATAATGACACCATAGTAAACTGTCCGACTTGTGCATGTGGTTGTGAGAACAACAGTACAAATCCTGGGAGCTGCGTAGAGCCAGACTCTCCATACTTAGCTTCAGCTGTAGCAGGTAATGGAAAATCTGCTAATTCTCCTTTGGTCCAGTGTACTAGCCATATGTGTCCAGTGAGAGTCCATTGGCATGTGAAGCTCAATTACAAGGAGTACTGGAGGGTGAAAGTCACAGTTACGAATTTCAATTACAGAATGAACTACACTCTCTGGAATCTTGTTGTTCAACATCCCAACTTCGATAATTTGACCAAGATTTTCAGCTTCAATTATAAGTCATTGACTCCTTATGCTGGCTTGAATGATACTGCAATGCTCTGGGGAGTCAAGTTTTATAATGATTTGCTCATGCAAGCTGGTCCTCTTGGAAATGCACAGTCAGAGCTTCTATTTCGGAAAGATACGTCAACTTTTACTTTTGAAAAGGGATGGGCTTTCCCCCGAAGGGTTTATTTTAACGGTGATAACTGTGTCATGCCACCTCCAGATGCTTATCCGTGGTTACCAAATGCCAGTCCTAGACCAACCATTTCCCTACTTAGTCCGGTCATAACTATCGTGGCATCTTTGGTATTCTTATTGGCTTATGCATAG

Protein Analysis

457

Amino Acids

50.7

Weight (kDa)

8.83

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 60 - 223 1.8e-68 COBRA-like protein
COB_C PF25079 232 - 425 1.4e-62 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60920 AT5G60920
fragaria_vesca FvH4_5g13550
malus_domestica MD06G1203700.v1.1 MD14G1214800.v1.1
prunus_persica Prupe.5G207800_v2.0.a1
pyrus_communis pycom06g18190 pycom14g17790
rosa_chinensis RchiOBHm_Chr7g0183381
rosa_laevigata RLG00000005051
rosa_multiflora Rmu_sc0000951.1_g000012
rosa_roxburghii Rroxscaffold_3G00270490
rosa_rugosa Rorug06G0457600
rosa_samantha Rh7AG058700 Rh7BG058700 Rh7DG058400
rosa_wichuraiana Rw7G004830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 396, 1050, 1113
Acc36I ACCTGC 1 cut(s) 824
AccB7I CCANNNNNTGG 1 cut(s) 557
AciI CCGC 1 cut(s) 611
AclWI GGATC 8 cut(s) 24, 37, 116, 353, 366, 439, 446, 452
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 4 cut(s) 339, 778, 874, 932
AfiI CCNNNNNNNGG 3 cut(s) 557, 1070, 1222
AgsI TTSAA 8 cut(s) 202, 321, 544, 964, 1004, 1045, 1078, 1199
AjnI CCWGG 8 cut(s) 232, 382, 454, 477, 550, 556, 644, 784
AleI CACNNNNGTG 1 cut(s) 368
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 8 cut(s) 24, 37, 116, 353, 366, 439, 446, 452
AlwNI CAGNNNCTG 2 cut(s) 26, 557
AoxI GGCC 1 cut(s) 554
ApeKI GCWGC 5 cut(s) 48, 417, 494, 578, 792
ApoI RAATTY 1 cut(s) 958
AspLEI GCGC 2 cut(s) 118, 232
AspS9I GGNCC 4 cut(s) 554, 627, 865, 1136
AsuHPI GGTGA 3 cut(s) 46, 952, 1250
AvaII GGWCC 3 cut(s) 627, 865, 1136
BamHI GGATCC 3 cut(s) 29, 358, 444
BanII GRGCYC 1 cut(s) 295
BarI GAAGNNNNNNTAC 2 cut(s) 905, 937
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 5 cut(s) 60, 404, 481, 590, 779
BccI CCATC 4 cut(s) 167, 243, 618, 1200
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
BciVI GTATCC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 2 cut(s) 876, 1296
BfmI CTRYAG 2 cut(s) 495, 828
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 824
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 5 cut(s) 49, 418, 495, 579, 793
BlsI GCNGC 5 cut(s) 50, 419, 496, 580, 794
BmcAI AGTACT 1 cut(s) 932
Bme1390I CCNGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
Bme18I GGWCC 3 cut(s) 627, 865, 1136
BmgT120I GGNCC 4 cut(s) 554, 627, 865, 1136
BmiI GGNNCC 5 cut(s) 31, 360, 446, 502, 629
BmrFI CCNGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
BmrI ACTGGG 1 cut(s) 4
BmsI GCATC 3 cut(s) 103, 1255, 1349
BmuI ACTGGG 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 692
BplI GAGNNNNNCTC 2 cut(s) 791, 823
BpmI CTGGAG 3 cut(s) 298, 955, 1245
BsaBI GATNNNNATC 1 cut(s) 1269
BsaJI CCNNGG 4 cut(s) 455, 551, 785, 1274
BsaWI WCCGGW 1 cut(s) 1321
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 557, 1070, 1222
Bse1I ACTGG 6 cut(s) 10, 31, 868, 890, 938, 1290
Bse3DI GCAATG 2 cut(s) 343, 1095
Bse8I GATNNNNATC 1 cut(s) 1269
BseBI CCWGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
BseDI CCNNGG 4 cut(s) 455, 551, 785, 1274
BseGI GGATG 5 cut(s) 157, 254, 713, 1006, 1211
BseJI GATNNNNATC 1 cut(s) 1269
BseLI CCNNNNNNNGG 3 cut(s) 557, 1070, 1222
BseMI GCAATG 2 cut(s) 343, 1095
BseMII CTCAG 4 cut(s) 33, 58, 294, 695
BseNI ACTGG 6 cut(s) 10, 31, 868, 890, 938, 1290
BseXI GCAGC 5 cut(s) 60, 404, 481, 590, 779
BshFI GGCC 1 cut(s) 556
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 1322
BslI CCNNNNNNNGG 3 cut(s) 557, 1070, 1222
BsmAI GTCTC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 5 cut(s) 29, 121, 358, 444, 451
BspACI CCGC 1 cut(s) 611
BspANI GGCC 1 cut(s) 556
BspCNI CTCAG 4 cut(s) 32, 57, 295, 694
BspLI GGNNCC 5 cut(s) 31, 360, 446, 502, 629
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 824
BspPI GGATC 8 cut(s) 24, 37, 116, 353, 366, 439, 446, 452
BspQI GCTCTTC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 343, 1095
BsrI ACTGG 6 cut(s) 10, 31, 868, 890, 938, 1290
BssECI CCNNGG 4 cut(s) 455, 551, 785, 1274
BssMI GATC 5 cut(s) 29, 121, 358, 444, 451
Bst2UI CCWGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
Bst4CI ACNGT 9 cut(s) 317, 367, 517, 743, 776, 952, 1155, 1238, 1247
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 3 cut(s) 576, 1072, 1131
BstDEI CTNAG 7 cut(s) 19, 44, 303, 676, 681, 817, 1316
BstDSI CCRYGG 1 cut(s) 1274
BstEII GGTNACC 1 cut(s) 1278
BstF5I GGATG 5 cut(s) 157, 254, 713, 1006, 1211
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 118, 232
BstKTI GATC 5 cut(s) 32, 124, 361, 447, 454
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 5 cut(s) 29, 121, 358, 444, 451
BstMWI GCNNNNNNNGC 2 cut(s) 113, 913
BstNI CCWGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
BstNSI RCATGY 2 cut(s) 759, 911
BstPI GGTNACC 1 cut(s) 1278
BstSCI CCNGG 8 cut(s) 232, 382, 454, 477, 550, 556, 644, 784
BstSFI CTRYAG 2 cut(s) 495, 828
BstV1I GCAGC 5 cut(s) 60, 404, 481, 590, 779
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 4 cut(s) 29, 358, 444, 451
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 4 cut(s) 29, 358, 444, 451
BsuI GTATCC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 556
BtgI CCRYGG 1 cut(s) 1274
BtsCI GGATG 5 cut(s) 157, 254, 713, 1006, 1211
BtsIMutI CAGTG 6 cut(s) 17, 24, 300, 490, 875, 897
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 3 cut(s) 576, 1072, 1131
CaiI CAGNNNCTG 2 cut(s) 26, 557
CfoI GCGC 2 cut(s) 118, 232
Cfr13I GGNCC 4 cut(s) 554, 627, 865, 1136
Csp6I GTAC 4 cut(s) 338, 777, 873, 931
CviAII CATG 8 cut(s) 255, 283, 441, 637, 756, 908, 1126, 1252
CviQI GTAC 4 cut(s) 338, 777, 873, 931
DdeI CTNAG 7 cut(s) 19, 44, 303, 676, 681, 817, 1316
DpnI GATC 5 cut(s) 31, 123, 360, 446, 453
DpnII GATC 5 cut(s) 29, 121, 358, 444, 451
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 295
Eco32I GATATC 1 cut(s) 602
Eco47I GGWCC 3 cut(s) 627, 865, 1136
Eco53kI GAGCTC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 807
Eco91I GGTNACC 1 cut(s) 1278
EcoICRI GAGCTC 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 554
EcoO65I GGTNACC 1 cut(s) 1278
EcoRII CCWGG 8 cut(s) 232, 382, 454, 477, 550, 556, 644, 784
EcoRV GATATC 1 cut(s) 602
EcoT22I ATGCAT 1 cut(s) 1369
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 8 cut(s) 258, 286, 444, 640, 759, 911, 1129, 1255
FatI CATG 8 cut(s) 254, 282, 440, 636, 755, 907, 1125, 1251
FauNDI CATATG 1 cut(s) 882
Fnu4HI GCNGC 5 cut(s) 49, 418, 495, 579, 793
FokI GGATG 5 cut(s) 164, 261, 700, 993, 1218
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 5 cut(s) 49, 418, 495, 579, 793
FspBI CTAG 2 cut(s) 876, 1296
GlaI GCGC 2 cut(s) 117, 231
GluI GCNGC 5 cut(s) 49, 418, 495, 579, 793
GsuI CTGGAG 3 cut(s) 298, 955, 1245
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 556
HapII CCGG 1 cut(s) 1322
HhaI GCGC 2 cut(s) 118, 232
Hin1II CATG 8 cut(s) 258, 286, 444, 640, 759, 911, 1129, 1255
Hin6I GCGC 2 cut(s) 116, 230
HinP1I GCGC 2 cut(s) 116, 230
HincII GTYRAC 1 cut(s) 1185
HindII GTYRAC 1 cut(s) 1185
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 7 cut(s) 5, 166, 806, 897, 991, 1060, 1101
HpaII CCGG 1 cut(s) 1322
HphI GGTGA 3 cut(s) 46, 952, 1250
Hpy166II GTNNAC 3 cut(s) 739, 873, 1185
Hpy188I TCNGA 4 cut(s) 684, 747, 1159, 1173
Hpy188III TCNNGA 6 cut(s) 139, 170, 277, 321, 988, 1262
Hpy8I GTNNAC 3 cut(s) 739, 873, 1185
HpyAV CCTTC 4 cut(s) 259, 349, 727, 1215
HpyCH4III ACNGT 9 cut(s) 317, 367, 517, 743, 776, 952, 1155, 1238, 1247
HpyCH4IV ACGT 5 cut(s) 135, 180, 242, 336, 1181
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 913
HpyF3I CTNAG 7 cut(s) 19, 44, 303, 676, 681, 817, 1316
HpySE526I ACGT 5 cut(s) 135, 180, 242, 336, 1181
Hsp92II CATG 8 cut(s) 258, 286, 444, 640, 759, 911, 1129, 1255
HspAI GCGC 2 cut(s) 116, 230
Kzo9I GATC 5 cut(s) 29, 121, 358, 444, 451
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 3 cut(s) 279, 290, 789
Lsp1109I GCAGC 5 cut(s) 60, 404, 481, 590, 779
LweI GCATC 3 cut(s) 103, 1255, 1349
MaeI CTAG 2 cut(s) 876, 1296
MaeII ACGT 5 cut(s) 135, 180, 242, 336, 1181
MaeIII GTNAC 6 cut(s) 136, 190, 378, 946, 952, 1278
MalI GATC 5 cut(s) 31, 123, 360, 446, 453
MboI GATC 5 cut(s) 29, 121, 358, 444, 451
MboII GAAGA 3 cut(s) 58, 633, 697
MflI RGATCY 4 cut(s) 29, 358, 444, 451
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 8 cut(s) 412, 671, 853, 919, 958, 964, 1021, 1045
MlyI GAGTC 6 cut(s) 14, 160, 800, 906, 1054, 1110
MmeI TCCRAC 3 cut(s) 143, 218, 770
MnlI CCTC 7 cut(s) 26, 91, 95, 419, 930, 1149, 1269
Mph1103I ATGCAT 1 cut(s) 1369
MseI TTAA 2 cut(s) 144, 1233
MslI CAYNNNNRTG 2 cut(s) 368, 906
MspA1I CMGCKG 2 cut(s) 611, 827
MspI CCGG 1 cut(s) 1322
MspR9I CCNGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
MwoI GCNNNNNNNGC 2 cut(s) 113, 913
NdeI CATATG 1 cut(s) 882
NdeII GATC 5 cut(s) 29, 121, 358, 444, 451
NlaIII CATG 8 cut(s) 258, 286, 444, 640, 759, 911, 1129, 1255
NlaIV GGNNCC 5 cut(s) 31, 360, 446, 502, 629
NmuCI GTSAC 2 cut(s) 136, 946
NsiI ATGCAT 1 cut(s) 1369
NspI RCATGY 2 cut(s) 759, 911
OliI CACNNNNGTG 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 71
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 1 cut(s) 991
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 5 cut(s) 50, 419, 496, 580, 794
PleI GAGTC 6 cut(s) 13, 160, 800, 905, 1054, 1109
PpsI GAGTC 6 cut(s) 13, 160, 800, 905, 1054, 1109
PsiI TTATAA 3 cut(s) 396, 1050, 1113
Psp124BI GAGCTC 1 cut(s) 295
Psp6I CCWGG 8 cut(s) 232, 382, 454, 477, 550, 556, 644, 784
PspEI GGTNACC 1 cut(s) 1278
PspGI CCWGG 8 cut(s) 232, 382, 454, 477, 550, 556, 644, 784
PspN4I GGNNCC 5 cut(s) 31, 360, 446, 502, 629
PspPI GGNCC 4 cut(s) 554, 627, 865, 1136
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 2 cut(s) 26, 557
PsuI RGATCY 4 cut(s) 29, 358, 444, 451
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 4 cut(s) 339, 778, 874, 932
RsaNI GTAC 4 cut(s) 338, 777, 873, 931
RseI CAYNNNNRTG 2 cut(s) 368, 906
SacI GAGCTC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 144, 1233
SatI GCNGC 5 cut(s) 49, 418, 495, 579, 793
Sau3AI GATC 5 cut(s) 29, 121, 358, 444, 451
Sau96I GGNCC 4 cut(s) 554, 627, 865, 1136
ScaI AGTACT 1 cut(s) 932
SchI GAGTC 6 cut(s) 14, 160, 800, 906, 1054, 1110
ScrFI CCNGG 8 cut(s) 234, 384, 456, 479, 552, 558, 646, 786
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 3 cut(s) 103, 1255, 1349
SfcI CTRYAG 2 cut(s) 495, 828
SinI GGWCC 3 cut(s) 627, 865, 1136
SmiMI CAYNNNNRTG 2 cut(s) 368, 906
Sse9I AATT 8 cut(s) 412, 671, 853, 919, 958, 964, 1021, 1045
SsiI CCGC 1 cut(s) 611
SspI AATATT 1 cut(s) 652
SspMI CTAG 2 cut(s) 876, 1296
SstI GAGCTC 1 cut(s) 295
StyD4I CCNGG 8 cut(s) 232, 382, 454, 477, 550, 556, 644, 784
TaaI ACNGT 9 cut(s) 317, 367, 517, 743, 776, 952, 1155, 1238, 1247
TaiI ACGT 5 cut(s) 138, 183, 245, 339, 1184
TaqI TCGA 1 cut(s) 1017
TasI AATT 8 cut(s) 412, 671, 853, 919, 958, 964, 1021, 1045
TatI WGTACW 3 cut(s) 776, 872, 930
TfiI GAWTC 1 cut(s) 991
Tru1I TTAA 2 cut(s) 144, 1233
Tru9I TTAA 2 cut(s) 144, 1233
TscAI CASTG 6 cut(s) 17, 31, 307, 490, 875, 897
TseFI GTSAC 2 cut(s) 136, 946
TseI GCWGC 5 cut(s) 48, 417, 494, 578, 792
Tsp45I GTSAC 2 cut(s) 136, 946
TspDTI ATGAA 2 cut(s) 462, 989
TspGWI ACGGA 1 cut(s) 1263
TspRI CASTG 6 cut(s) 17, 31, 307, 490, 875, 897
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 627, 865, 1136
XapI RAATTY 1 cut(s) 958
XceI RCATGY 2 cut(s) 759, 911
XspI CTAG 2 cut(s) 876, 1296
ZrmI AGTACT 1 cut(s) 932
Zsp2I ATGCAT 1 cut(s) 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.