COBRA-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60920 AT5G60920 |
| fragaria_vesca | FvH4_5g13550 |
| malus_domestica | MD06G1203700.v1.1 MD14G1214800.v1.1 |
| prunus_persica | Prupe.5G207800_v2.0.a1 |
| pyrus_communis | pycom06g18190 pycom14g17790 |
| rosa_chinensis | RchiOBHm_Chr7g0183381 |
| rosa_laevigata | RLG00000005051 |
| rosa_multiflora | Rmu_sc0000951.1_g000012 |
| rosa_roxburghii | Rroxscaffold_3G00270490 |
| rosa_rugosa | Rorug06G0457600 |
| rosa_samantha | Rh7AG058700 Rh7BG058700 Rh7DG058400 |
| rosa_wichuraiana | Rw7G004830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1113 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1247 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1095 |
| AciI | CCGC | 2 cut(s) | 611, 1323 |
| AclI | AACGTT | 1 cut(s) | 651 |
| AclWI | GGATC | 7 cut(s) | 24, 37, 116, 353, 366, 439, 452 |
| AcsI | RAATTY | 2 cut(s) | 958, 1285 |
| AcuI | CTGAAG | 2 cut(s) | 70, 807 |
| AdeI | CACNNNGTG | 1 cut(s) | 987 |
| AfaI | GTAC | 2 cut(s) | 874, 932 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 309, 557, 1070, 1095, 1275 |
| AgsI | TTSAA | 5 cut(s) | 321, 544, 964, 1045, 1199 |
| AjnI | CCWGG | 9 cut(s) | 232, 382, 447, 550, 556, 644, 675, 784, 838 |
| AluBI | AGCT | 9 cut(s) | 43, 51, 741, 792, 821, 827, 1041, 1133, 1162 |
| AluI | AGCT | 9 cut(s) | 43, 51, 741, 792, 821, 827, 1041, 1133, 1162 |
| Alw21I | GWGCWC | 2 cut(s) | 295, 1164 |
| Alw26I | GTCTC | 1 cut(s) | 722 |
| AlwI | GGATC | 7 cut(s) | 24, 37, 116, 353, 366, 439, 452 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 26, 785, 839 |
| AoxI | GGCC | 2 cut(s) | 554, 1135 |
| ApeKI | GCWGC | 5 cut(s) | 48, 417, 494, 741, 762 |
| ApoI | RAATTY | 2 cut(s) | 958, 1285 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 321, 353 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 533 |
| AspS9I | GGNCC | 6 cut(s) | 451, 554, 627, 836, 865, 1136 |
| AsuC2I | CCSGG | 1 cut(s) | 130 |
| AsuHPI | GGTGA | 3 cut(s) | 529, 1250, 1321 |
| AsuII | TTCGAA | 1 cut(s) | 1171 |
| AvaII | GGWCC | 4 cut(s) | 451, 627, 836, 865 |
| BamHI | GGATCC | 3 cut(s) | 29, 358, 444 |
| BanII | GRGCYC | 1 cut(s) | 1164 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 905, 937 |
| Bbv12I | GWGCWC | 2 cut(s) | 295, 1164 |
| BbvI | GCAGC | 5 cut(s) | 60, 404, 481, 728, 749 |
| BccI | CCATC | 6 cut(s) | 167, 243, 618, 1200, 1334, 1340 |
| BciT130I | CCWGG | 9 cut(s) | 234, 384, 449, 552, 558, 646, 677, 786, 840 |
| BcnI | CCSGG | 1 cut(s) | 130 |
| BcoDI | GTCTC | 1 cut(s) | 722 |
| BfaI | CTAG | 1 cut(s) | 876 |
| BfmI | CTRYAG | 3 cut(s) | 99, 495, 777 |
| BisI | GCNGC | 5 cut(s) | 49, 418, 495, 742, 763 |
| BlpI | GCTNAGC | 1 cut(s) | 44 |
| BlsI | GCNGC | 5 cut(s) | 50, 419, 496, 743, 764 |
| BmcAI | AGTACT | 1 cut(s) | 932 |
| Bme18I | GGWCC | 4 cut(s) | 451, 627, 836, 865 |
| BmgT120I | GGNCC | 6 cut(s) | 451, 554, 627, 836, 865, 1136 |
| BmiI | GGNNCC | 7 cut(s) | 6, 31, 360, 388, 446, 453, 629 |
| BmsI | GCATC | 4 cut(s) | 103, 1168, 1190, 1255 |
| BpmI | CTGGAG | 3 cut(s) | 153, 955, 1245 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 44 |
| Bpu14I | TTCGAA | 1 cut(s) | 1171 |
| BpuMI | CCSGG | 1 cut(s) | 130 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1269 |
| BsaI | GGTCTC | 1 cut(s) | 722 |
| BsaJI | CCNNGG | 5 cut(s) | 8, 551, 784, 785, 1274 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 26, 841, 871 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 309, 557, 1070, 1095, 1275 |
| Bse1I | ACTGG | 5 cut(s) | 31, 868, 890, 938, 1290 |
| Bse3DI | GCAATG | 1 cut(s) | 343 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1269 |
| BseBI | CCWGG | 9 cut(s) | 234, 384, 449, 552, 558, 646, 677, 786, 840 |
| BseDI | CCNNGG | 5 cut(s) | 8, 551, 784, 785, 1274 |
| BseGI | GGATG | 6 cut(s) | 157, 254, 1006, 1183, 1211, 1318 |
| BseJI | GATNNNNATC | 1 cut(s) | 1269 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 309, 557, 1070, 1095, 1275 |
| BseMI | GCAATG | 1 cut(s) | 343 |
| BseMII | CTCAG | 1 cut(s) | 58 |
| BseNI | ACTGG | 5 cut(s) | 31, 868, 890, 938, 1290 |
| BseRI | GAGGAG | 2 cut(s) | 703, 849 |
| BseXI | GCAGC | 5 cut(s) | 60, 404, 481, 728, 749 |
| BseYI | CCCAGC | 1 cut(s) | 454 |
| BsgI | GTGCAG | 1 cut(s) | 1172 |
| BshFI | GGCC | 2 cut(s) | 556, 1137 |
| BsiHKAI | GWGCWC | 2 cut(s) | 295, 1164 |
| BsiSI | CCGG | 1 cut(s) | 129 |
| BslFI | GGGAC | 2 cut(s) | 323, 1278 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 309, 557, 1070, 1095, 1275 |
| BsmAI | GTCTC | 1 cut(s) | 722 |
| BsmFI | GGGAC | 2 cut(s) | 323, 1278 |
| BsnI | GGCC | 2 cut(s) | 556, 1137 |
| Bso31I | GGTCTC | 1 cut(s) | 722 |
| Bsp119I | TTCGAA | 1 cut(s) | 1171 |
| Bsp1286I | GDGCHC | 2 cut(s) | 295, 1164 |
| Bsp143I | GATC | 6 cut(s) | 29, 121, 358, 444, 480, 915 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 44 |
| Bsp19I | CCATGG | 1 cut(s) | 1274 |
| BspACI | CCGC | 2 cut(s) | 611, 1323 |
| BspANI | GGCC | 2 cut(s) | 556, 1137 |
| BspCNI | CTCAG | 1 cut(s) | 57 |
| BspLI | GGNNCC | 7 cut(s) | 6, 31, 360, 388, 446, 453, 629 |
| BspMAI | CTGCAG | 1 cut(s) | 499 |
| BspPI | GGATC | 7 cut(s) | 24, 37, 116, 353, 366, 439, 452 |
| BspT104I | TTCGAA | 1 cut(s) | 1171 |
| BspTNI | GGTCTC | 1 cut(s) | 722 |
| BsrDI | GCAATG | 1 cut(s) | 343 |
| BsrI | ACTGG | 5 cut(s) | 31, 868, 890, 938, 1290 |
| BssECI | CCNNGG | 5 cut(s) | 8, 551, 784, 785, 1274 |
| BssMI | GATC | 6 cut(s) | 29, 121, 358, 444, 480, 915 |
| BssT1I | CCWWGG | 1 cut(s) | 1274 |
| Bst2UI | CCWGG | 9 cut(s) | 234, 384, 449, 552, 558, 646, 677, 786, 840 |
| Bst4CI | ACNGT | 2 cut(s) | 367, 517 |
| BstBI | TTCGAA | 1 cut(s) | 1171 |
| BstC8I | GCNNGC | 2 cut(s) | 1072, 1135 |
| BstDEI | CTNAG | 1 cut(s) | 44 |
| BstDSI | CCRYGG | 1 cut(s) | 1274 |
| BstF5I | GGATG | 6 cut(s) | 157, 254, 1006, 1183, 1211, 1318 |
| BstKTI | GATC | 6 cut(s) | 32, 124, 361, 447, 483, 918 |
| BstMAI | GTCTC | 1 cut(s) | 722 |
| BstMBI | GATC | 6 cut(s) | 29, 121, 358, 444, 480, 915 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 113, 1159 |
| BstNI | CCWGG | 9 cut(s) | 234, 384, 449, 552, 558, 646, 677, 786, 840 |
| BstNSI | RCATGY | 1 cut(s) | 911 |
| BstSFI | CTRYAG | 3 cut(s) | 99, 495, 777 |
| BstV1I | GCAGC | 5 cut(s) | 60, 404, 481, 728, 749 |
| BstX2I | RGATCY | 3 cut(s) | 29, 358, 444 |
| BstYI | RGATCY | 3 cut(s) | 29, 358, 444 |
| BsuRI | GGCC | 2 cut(s) | 556, 1137 |
| BtgI | CCRYGG | 1 cut(s) | 1274 |
| BtsCI | GGATG | 6 cut(s) | 157, 254, 1006, 1183, 1211, 1318 |
| BtsI | GCAGTG | 1 cut(s) | 1083 |
| BtsIMutI | CAGTG | 4 cut(s) | 24, 490, 875, 1083 |
| Cac8I | GCNNGC | 2 cut(s) | 1072, 1135 |
| CaiI | CAGNNNCTG | 3 cut(s) | 26, 785, 839 |
| Cfr13I | GGNCC | 6 cut(s) | 451, 554, 627, 836, 865, 1136 |
| Csp6I | GTAC | 2 cut(s) | 873, 931 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 351, 386 |
| CviAII | CATG | 9 cut(s) | 81, 255, 283, 441, 637, 908, 1090, 1252, 1275 |
| CviQI | GTAC | 2 cut(s) | 873, 931 |
| DdeI | CTNAG | 1 cut(s) | 44 |
| DpnI | GATC | 6 cut(s) | 31, 123, 360, 446, 482, 917 |
| DpnII | GATC | 6 cut(s) | 29, 121, 358, 444, 480, 915 |
| DraIII | CACNNNGTG | 1 cut(s) | 987 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1247 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1247 |
| Ecl136II | GAGCTC | 1 cut(s) | 1162 |
| Eco130I | CCWWGG | 1 cut(s) | 1274 |
| Eco24I | GRGCYC | 1 cut(s) | 1164 |
| Eco31I | GGTCTC | 1 cut(s) | 722 |
| Eco47I | GGWCC | 4 cut(s) | 451, 627, 836, 865 |
| Eco53kI | GAGCTC | 1 cut(s) | 1162 |
| Eco57I | CTGAAG | 2 cut(s) | 70, 807 |
| EcoICRI | GAGCTC | 1 cut(s) | 1162 |
| EcoO109I | RGGNCCY | 2 cut(s) | 451, 836 |
| EcoRII | CCWGG | 9 cut(s) | 232, 382, 447, 550, 556, 644, 675, 784, 838 |
| EcoT14I | CCWWGG | 1 cut(s) | 1274 |
| EcoT22I | ATGCAT | 2 cut(s) | 1183, 1369 |
| EcoT38I | GRGCYC | 1 cut(s) | 1164 |
| ErhI | CCWWGG | 1 cut(s) | 1274 |
| FaeI | CATG | 9 cut(s) | 84, 258, 286, 444, 640, 911, 1093, 1255, 1278 |
| FaqI | GGGAC | 2 cut(s) | 323, 1278 |
| FatI | CATG | 9 cut(s) | 80, 254, 282, 440, 636, 907, 1089, 1251, 1274 |
| FauI | CCCGC | 1 cut(s) | 1330 |
| FauNDI | CATATG | 1 cut(s) | 882 |
| Fnu4HI | GCNGC | 5 cut(s) | 49, 418, 495, 742, 763 |
| FokI | GGATG | 6 cut(s) | 164, 261, 993, 1190, 1218, 1305 |
| FriOI | GRGCYC | 1 cut(s) | 1164 |
| Fsp4HI | GCNGC | 5 cut(s) | 49, 418, 495, 742, 763 |
| FspBI | CTAG | 1 cut(s) | 876 |
| GluI | GCNGC | 5 cut(s) | 49, 418, 495, 742, 763 |
| GsaI | CCCAGC | 1 cut(s) | 458 |
| GsuI | CTGGAG | 3 cut(s) | 153, 955, 1245 |
| HaeIII | GGCC | 2 cut(s) | 556, 1137 |
| HapII | CCGG | 1 cut(s) | 129 |
| Hin1II | CATG | 9 cut(s) | 84, 258, 286, 444, 640, 911, 1093, 1255, 1278 |
| HinfI | GANTC | 3 cut(s) | 166, 897, 991 |
| HpaII | CCGG | 1 cut(s) | 129 |
| HphI | GGTGA | 3 cut(s) | 529, 1250, 1321 |
| Hpy166II | GTNNAC | 1 cut(s) | 873 |
| Hpy188I | TCNGA | 4 cut(s) | 22, 521, 896, 1159 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 321, 478, 1262 |
| Hpy8I | GTNNAC | 1 cut(s) | 873 |
| HpyAV | CCTTC | 3 cut(s) | 349, 727, 1215 |
| HpyCH4III | ACNGT | 2 cut(s) | 367, 517 |
| HpyCH4IV | ACGT | 1 cut(s) | 651 |
| HpyCH4V | TGCA | 8 cut(s) | 410, 420, 497, 660, 1003, 1153, 1181, 1367 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 113, 1159 |
| HpyF3I | CTNAG | 1 cut(s) | 44 |
| HpySE526I | ACGT | 1 cut(s) | 651 |
| Hsp92II | CATG | 9 cut(s) | 84, 258, 286, 444, 640, 911, 1093, 1255, 1278 |
| Kzo9I | GATC | 6 cut(s) | 29, 121, 358, 444, 480, 915 |
| LmnI | GCTCC | 6 cut(s) | 4, 279, 290, 789, 862, 1167 |
| Lsp1109I | GCAGC | 5 cut(s) | 60, 404, 481, 728, 749 |
| LweI | GCATC | 4 cut(s) | 103, 1168, 1190, 1255 |
| MaeI | CTAG | 1 cut(s) | 876 |
| MaeII | ACGT | 1 cut(s) | 651 |
| MaeIII | GTNAC | 4 cut(s) | 190, 652, 946, 1238 |
| MalI | GATC | 6 cut(s) | 31, 123, 360, 446, 482, 917 |
| MboI | GATC | 6 cut(s) | 29, 121, 358, 444, 480, 915 |
| MboII | GAAGA | 2 cut(s) | 925, 1327 |
| MfeI | CAATTG | 1 cut(s) | 1243 |
| MflI | RGATCY | 3 cut(s) | 29, 358, 444 |
| MhlI | GDGCHC | 2 cut(s) | 295, 1164 |
| MlyI | GAGTC | 2 cut(s) | 160, 906 |
| MmeI | TCCRAC | 3 cut(s) | 143, 149, 386 |
| MnlI | CCTC | 6 cut(s) | 18, 724, 870, 1149, 1227, 1269 |
| Mph1103I | ATGCAT | 2 cut(s) | 1183, 1369 |
| MroXI | GAANNNNTTC | 1 cut(s) | 533 |
| MseI | TTAA | 4 cut(s) | 144, 201, 1076, 1233 |
| MslI | CAYNNNNRTG | 3 cut(s) | 247, 906, 1088 |
| MspA1I | CMGCKG | 2 cut(s) | 611, 827 |
| MspI | CCGG | 1 cut(s) | 129 |
| MunI | CAATTG | 1 cut(s) | 1243 |
| MvaI | CCWGG | 9 cut(s) | 234, 384, 449, 552, 558, 646, 677, 786, 840 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 113, 1159 |
| NciI | CCSGG | 1 cut(s) | 130 |
| NcoI | CCATGG | 1 cut(s) | 1274 |
| NdeI | CATATG | 1 cut(s) | 882 |
| NdeII | GATC | 6 cut(s) | 29, 121, 358, 444, 480, 915 |
| NlaIII | CATG | 9 cut(s) | 84, 258, 286, 444, 640, 911, 1093, 1255, 1278 |
| NlaIV | GGNNCC | 7 cut(s) | 6, 31, 360, 388, 446, 453, 629 |
| NmuCI | GTSAC | 2 cut(s) | 946, 1238 |
| NsiI | ATGCAT | 2 cut(s) | 1183, 1369 |
| NspI | RCATGY | 1 cut(s) | 911 |
| NspV | TTCGAA | 1 cut(s) | 1171 |
| PasI | CCCWGGG | 1 cut(s) | 785 |
| PdmI | GAANNNNTTC | 1 cut(s) | 533 |
| PfeI | GAWTC | 1 cut(s) | 991 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1095 |
| PfoI | TCCNGGA | 2 cut(s) | 447, 838 |
| PkrI | GCNGC | 5 cut(s) | 50, 419, 496, 743, 764 |
| PleI | GAGTC | 2 cut(s) | 160, 905 |
| PpsI | GAGTC | 2 cut(s) | 160, 905 |
| PpuMI | RGGWCCY | 2 cut(s) | 451, 836 |
| PsiI | TTATAA | 1 cut(s) | 1113 |
| Psp124BI | GAGCTC | 1 cut(s) | 1164 |
| Psp1406I | AACGTT | 1 cut(s) | 651 |
| Psp5II | RGGWCCY | 2 cut(s) | 451, 836 |
| Psp6I | CCWGG | 9 cut(s) | 232, 382, 447, 550, 556, 644, 675, 784, 838 |
| PspFI | CCCAGC | 1 cut(s) | 454 |
| PspGI | CCWGG | 9 cut(s) | 232, 382, 447, 550, 556, 644, 675, 784, 838 |
| PspN4I | GGNNCC | 7 cut(s) | 6, 31, 360, 388, 446, 453, 629 |
| PspPI | GGNCC | 6 cut(s) | 451, 554, 627, 836, 865, 1136 |
| PspPPI | RGGWCCY | 2 cut(s) | 451, 836 |
| PstI | CTGCAG | 1 cut(s) | 499 |
| PstNI | CAGNNNCTG | 3 cut(s) | 26, 785, 839 |
| PsuI | RGATCY | 3 cut(s) | 29, 358, 444 |
| PvuII | CAGCTG | 1 cut(s) | 827 |
| RsaI | GTAC | 2 cut(s) | 874, 932 |
| RsaNI | GTAC | 2 cut(s) | 873, 931 |
| RseI | CAYNNNNRTG | 3 cut(s) | 247, 906, 1088 |
| SacI | GAGCTC | 1 cut(s) | 1164 |
| SaqAI | TTAA | 4 cut(s) | 144, 201, 1076, 1233 |
| SatI | GCNGC | 5 cut(s) | 49, 418, 495, 742, 763 |
| Sau3AI | GATC | 6 cut(s) | 29, 121, 358, 444, 480, 915 |
| Sau96I | GGNCC | 6 cut(s) | 451, 554, 627, 836, 865, 1136 |
| ScaI | AGTACT | 1 cut(s) | 932 |
| SchI | GAGTC | 2 cut(s) | 160, 906 |
| SduI | GDGCHC | 2 cut(s) | 295, 1164 |
| SfaNI | GCATC | 4 cut(s) | 103, 1168, 1190, 1255 |
| SfcI | CTRYAG | 3 cut(s) | 99, 495, 777 |
| SfuI | TTCGAA | 1 cut(s) | 1171 |
| SinI | GGWCC | 4 cut(s) | 451, 627, 836, 865 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 247, 906, 1088 |
| SsiI | CCGC | 2 cut(s) | 611, 1323 |
| SspMI | CTAG | 1 cut(s) | 876 |
| SstI | GAGCTC | 1 cut(s) | 1164 |
| StyI | CCWWGG | 1 cut(s) | 1274 |
| TaaI | ACNGT | 2 cut(s) | 367, 517 |
| TaiI | ACGT | 1 cut(s) | 654 |
| TaqI | TCGA | 3 cut(s) | 217, 1171, 1219 |
| TatI | WGTACW | 2 cut(s) | 872, 930 |
| TfiI | GAWTC | 1 cut(s) | 991 |
| Tru1I | TTAA | 4 cut(s) | 144, 201, 1076, 1233 |
| Tru9I | TTAA | 4 cut(s) | 144, 201, 1076, 1233 |
| TscAI | CASTG | 4 cut(s) | 31, 490, 875, 1090 |
| TseFI | GTSAC | 2 cut(s) | 946, 1238 |
| TseI | GCWGC | 5 cut(s) | 48, 417, 494, 741, 762 |
| Tsp45I | GTSAC | 2 cut(s) | 946, 1238 |
| TspDTI | ATGAA | 4 cut(s) | 69, 449, 989, 1307 |
| TspRI | CASTG | 4 cut(s) | 31, 490, 875, 1090 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1095 |
| VpaK11BI | GGWCC | 4 cut(s) | 451, 627, 836, 865 |
| XapI | RAATTY | 2 cut(s) | 958, 1285 |
| XceI | RCATGY | 1 cut(s) | 911 |
| XmnI | GAANNNNTTC | 1 cut(s) | 533 |
| XspI | CTAG | 1 cut(s) | 876 |
| ZrmI | AGTACT | 1 cut(s) | 932 |
| Zsp2I | ATGCAT | 2 cut(s) | 1183, 1369 |