Prupe.5G207800_v2.0.a1

COBRA-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
16567965 .. 16571794
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G207800.1

Sequence Viewer

Length: 1371 bp
ATGGAGCCTCGGTGCTTATCAGACACTGGATCCATAGTCAAGCTCAGCAGCTTTGCCATTTTGCTTGTCTTTTTGCTTTCATGCTTCAGTTTTACTTCTACAGAAGCCTATGATGCCCTTGATCCAACCGGGAATATCACAATTAAATGGGATGTCATTAGTTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTTTAACTTCCAGCAGTATCGACATATACAAACACCAGGCTGGACATTAGGATGGACATGGGCAAAAAAGGAAGTAATTTGGAGCATGGTGGGAGCACAAACCACCGAGCAAGGGGATTGTTCAAGATACAAAGGGAATGTCCCACATTGCTGTAAGAAGGATCCAACAGTTGTGGATTTGTTGCCAGGAACCCCTTACAACCAGCAGATTGCAAATTGCTGCAAAGGGGGAGTAATGAACTCATGGATCCAGGACCCAGCCAATGCTATAAGTTCGTTCCAGATCAGTGTGGGTGCTGCAGGAACAACTAACAAAACTGTCAGACTGCCGAAAAACTTCACCTTGAAAGCACCTGGGCCTGGATATTCTTGTGGGATAGCAAAGATTGTAAAACCAACCAGATTTCTAACAGCGGATAAAAGGAGATGGACCCAAGCCATGATGACCTGGAACGTTACTTGCACATACTCGCAATTCCTGGCTCAAAAGACACCCACTTGTTGTGTTTCTCTCTCCTCCTTCTATAATGAGACCATAGTAAGCTGCCCCACTTGTGCCTGTGGCTGCCAGAACAACGCTACAGACCCTGGGAGCTGTGTAGAGCCGAACAATCCATATTTAGCTTCAGCTGTATCAGGTCCTGGAAAATCTACTAATGCTCCTCTGGTCCAGTGTACTAGCCATATGTGTCCAGTCCGAGTCCATTGGCATGTGAAGATCAATTACAAGGAGTACTGGAGAGTGAAAGTCACAATTACAAATTTCAATTACAGAATGAACTACACGCTGTGGAATCTTGTTGTGCAACATCCCAACTTTGATAATTTGACCAAGATTTTCAGCTTCAATTACAAATCCCTAACTCCTTATGCTGGCTTAAATGACACTGCCATGTTGTGGGGAGTAAAGTTTTATAACGATTTGCTCACACAAGCTGGCCCTCTTGGAAATGTGCAGTCAGAGCTCCTATTTCGAAAGGATGCATCAACTTTCACTTTTGAAAAGGGATGGGCTTTTCCTCGAAGGATTTATTTTAATGGTGACAATTGTGTCATGCCACCTCCAGATGCCTATCCATGGTTGCCAAATTCCAGTCCCAAACAAGTCATTTCCATACTTCATCCCGCCATCACCATCTTCGTATCTCTGCTATTCTTATTGGCTTATGCATAG

Protein Analysis

457

Amino Acids

50.96

Weight (kDa)

8.86

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60920 AT5G60920
fragaria_vesca FvH4_5g13550
malus_domestica MD06G1203700.v1.1 MD14G1214800.v1.1
prunus_persica Prupe.5G207800_v2.0.a1
pyrus_communis pycom06g18190 pycom14g17790
rosa_chinensis RchiOBHm_Chr7g0183381
rosa_laevigata RLG00000005051
rosa_multiflora Rmu_sc0000951.1_g000012
rosa_roxburghii Rroxscaffold_3G00270490
rosa_rugosa Rorug06G0457600
rosa_samantha Rh7AG058700 Rh7BG058700 Rh7DG058400
rosa_wichuraiana Rw7G004830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AasI GACNNNNNNGTC 1 cut(s) 1247
AccB7I CCANNNNNTGG 1 cut(s) 1095
AciI CCGC 2 cut(s) 611, 1323
AclI AACGTT 1 cut(s) 651
AclWI GGATC 7 cut(s) 24, 37, 116, 353, 366, 439, 452
AcsI RAATTY 2 cut(s) 958, 1285
AcuI CTGAAG 2 cut(s) 70, 807
AdeI CACNNNGTG 1 cut(s) 987
AfaI GTAC 2 cut(s) 874, 932
AfiI CCNNNNNNNGG 5 cut(s) 309, 557, 1070, 1095, 1275
AgsI TTSAA 5 cut(s) 321, 544, 964, 1045, 1199
AjnI CCWGG 9 cut(s) 232, 382, 447, 550, 556, 644, 675, 784, 838
AluBI AGCT 9 cut(s) 43, 51, 741, 792, 821, 827, 1041, 1133, 1162
AluI AGCT 9 cut(s) 43, 51, 741, 792, 821, 827, 1041, 1133, 1162
Alw21I GWGCWC 2 cut(s) 295, 1164
Alw26I GTCTC 1 cut(s) 722
AlwI GGATC 7 cut(s) 24, 37, 116, 353, 366, 439, 452
AlwNI CAGNNNCTG 3 cut(s) 26, 785, 839
AoxI GGCC 2 cut(s) 554, 1135
ApeKI GCWGC 5 cut(s) 48, 417, 494, 741, 762
ApoI RAATTY 2 cut(s) 958, 1285
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
Asp700I GAANNNNTTC 1 cut(s) 533
AspS9I GGNCC 6 cut(s) 451, 554, 627, 836, 865, 1136
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 529, 1250, 1321
AsuII TTCGAA 1 cut(s) 1171
AvaII GGWCC 4 cut(s) 451, 627, 836, 865
BamHI GGATCC 3 cut(s) 29, 358, 444
BanII GRGCYC 1 cut(s) 1164
BarI GAAGNNNNNNTAC 2 cut(s) 905, 937
Bbv12I GWGCWC 2 cut(s) 295, 1164
BbvI GCAGC 5 cut(s) 60, 404, 481, 728, 749
BccI CCATC 6 cut(s) 167, 243, 618, 1200, 1334, 1340
BciT130I CCWGG 9 cut(s) 234, 384, 449, 552, 558, 646, 677, 786, 840
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 722
BfaI CTAG 1 cut(s) 876
BfmI CTRYAG 3 cut(s) 99, 495, 777
BisI GCNGC 5 cut(s) 49, 418, 495, 742, 763
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 5 cut(s) 50, 419, 496, 743, 764
BmcAI AGTACT 1 cut(s) 932
Bme18I GGWCC 4 cut(s) 451, 627, 836, 865
BmgT120I GGNCC 6 cut(s) 451, 554, 627, 836, 865, 1136
BmiI GGNNCC 7 cut(s) 6, 31, 360, 388, 446, 453, 629
BmsI GCATC 4 cut(s) 103, 1168, 1190, 1255
BpmI CTGGAG 3 cut(s) 153, 955, 1245
Bpu1102I GCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 1171
BpuMI CCSGG 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 1269
BsaI GGTCTC 1 cut(s) 722
BsaJI CCNNGG 5 cut(s) 8, 551, 784, 785, 1274
BsaXI ACNNNNNCTCC 3 cut(s) 26, 841, 871
Bsc4I CCNNNNNNNGG 5 cut(s) 309, 557, 1070, 1095, 1275
Bse1I ACTGG 5 cut(s) 31, 868, 890, 938, 1290
Bse3DI GCAATG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 1269
BseBI CCWGG 9 cut(s) 234, 384, 449, 552, 558, 646, 677, 786, 840
BseDI CCNNGG 5 cut(s) 8, 551, 784, 785, 1274
BseGI GGATG 6 cut(s) 157, 254, 1006, 1183, 1211, 1318
BseJI GATNNNNATC 1 cut(s) 1269
BseLI CCNNNNNNNGG 5 cut(s) 309, 557, 1070, 1095, 1275
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 5 cut(s) 31, 868, 890, 938, 1290
BseRI GAGGAG 2 cut(s) 703, 849
BseXI GCAGC 5 cut(s) 60, 404, 481, 728, 749
BseYI CCCAGC 1 cut(s) 454
BsgI GTGCAG 1 cut(s) 1172
BshFI GGCC 2 cut(s) 556, 1137
BsiHKAI GWGCWC 2 cut(s) 295, 1164
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 2 cut(s) 323, 1278
BslI CCNNNNNNNGG 5 cut(s) 309, 557, 1070, 1095, 1275
BsmAI GTCTC 1 cut(s) 722
BsmFI GGGAC 2 cut(s) 323, 1278
BsnI GGCC 2 cut(s) 556, 1137
Bso31I GGTCTC 1 cut(s) 722
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 2 cut(s) 295, 1164
Bsp143I GATC 6 cut(s) 29, 121, 358, 444, 480, 915
Bsp1720I GCTNAGC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 1274
BspACI CCGC 2 cut(s) 611, 1323
BspANI GGCC 2 cut(s) 556, 1137
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 7 cut(s) 6, 31, 360, 388, 446, 453, 629
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 7 cut(s) 24, 37, 116, 353, 366, 439, 452
BspT104I TTCGAA 1 cut(s) 1171
BspTNI GGTCTC 1 cut(s) 722
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 5 cut(s) 31, 868, 890, 938, 1290
BssECI CCNNGG 5 cut(s) 8, 551, 784, 785, 1274
BssMI GATC 6 cut(s) 29, 121, 358, 444, 480, 915
BssT1I CCWWGG 1 cut(s) 1274
Bst2UI CCWGG 9 cut(s) 234, 384, 449, 552, 558, 646, 677, 786, 840
Bst4CI ACNGT 2 cut(s) 367, 517
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 2 cut(s) 1072, 1135
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 1274
BstF5I GGATG 6 cut(s) 157, 254, 1006, 1183, 1211, 1318
BstKTI GATC 6 cut(s) 32, 124, 361, 447, 483, 918
BstMAI GTCTC 1 cut(s) 722
BstMBI GATC 6 cut(s) 29, 121, 358, 444, 480, 915
BstMWI GCNNNNNNNGC 2 cut(s) 113, 1159
BstNI CCWGG 9 cut(s) 234, 384, 449, 552, 558, 646, 677, 786, 840
BstNSI RCATGY 1 cut(s) 911
BstSFI CTRYAG 3 cut(s) 99, 495, 777
BstV1I GCAGC 5 cut(s) 60, 404, 481, 728, 749
BstX2I RGATCY 3 cut(s) 29, 358, 444
BstYI RGATCY 3 cut(s) 29, 358, 444
BsuRI GGCC 2 cut(s) 556, 1137
BtgI CCRYGG 1 cut(s) 1274
BtsCI GGATG 6 cut(s) 157, 254, 1006, 1183, 1211, 1318
BtsI GCAGTG 1 cut(s) 1083
BtsIMutI CAGTG 4 cut(s) 24, 490, 875, 1083
Cac8I GCNNGC 2 cut(s) 1072, 1135
CaiI CAGNNNCTG 3 cut(s) 26, 785, 839
Cfr13I GGNCC 6 cut(s) 451, 554, 627, 836, 865, 1136
Csp6I GTAC 2 cut(s) 873, 931
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 9 cut(s) 81, 255, 283, 441, 637, 908, 1090, 1252, 1275
CviQI GTAC 2 cut(s) 873, 931
DdeI CTNAG 1 cut(s) 44
DpnI GATC 6 cut(s) 31, 123, 360, 446, 482, 917
DpnII GATC 6 cut(s) 29, 121, 358, 444, 480, 915
DraIII CACNNNGTG 1 cut(s) 987
DrdI GACNNNNNNGTC 1 cut(s) 1247
DseDI GACNNNNNNGTC 1 cut(s) 1247
Ecl136II GAGCTC 1 cut(s) 1162
Eco130I CCWWGG 1 cut(s) 1274
Eco24I GRGCYC 1 cut(s) 1164
Eco31I GGTCTC 1 cut(s) 722
Eco47I GGWCC 4 cut(s) 451, 627, 836, 865
Eco53kI GAGCTC 1 cut(s) 1162
Eco57I CTGAAG 2 cut(s) 70, 807
EcoICRI GAGCTC 1 cut(s) 1162
EcoO109I RGGNCCY 2 cut(s) 451, 836
EcoRII CCWGG 9 cut(s) 232, 382, 447, 550, 556, 644, 675, 784, 838
EcoT14I CCWWGG 1 cut(s) 1274
EcoT22I ATGCAT 2 cut(s) 1183, 1369
EcoT38I GRGCYC 1 cut(s) 1164
ErhI CCWWGG 1 cut(s) 1274
FaeI CATG 9 cut(s) 84, 258, 286, 444, 640, 911, 1093, 1255, 1278
FaqI GGGAC 2 cut(s) 323, 1278
FatI CATG 9 cut(s) 80, 254, 282, 440, 636, 907, 1089, 1251, 1274
FauI CCCGC 1 cut(s) 1330
FauNDI CATATG 1 cut(s) 882
Fnu4HI GCNGC 5 cut(s) 49, 418, 495, 742, 763
FokI GGATG 6 cut(s) 164, 261, 993, 1190, 1218, 1305
FriOI GRGCYC 1 cut(s) 1164
Fsp4HI GCNGC 5 cut(s) 49, 418, 495, 742, 763
FspBI CTAG 1 cut(s) 876
GluI GCNGC 5 cut(s) 49, 418, 495, 742, 763
GsaI CCCAGC 1 cut(s) 458
GsuI CTGGAG 3 cut(s) 153, 955, 1245
HaeIII GGCC 2 cut(s) 556, 1137
HapII CCGG 1 cut(s) 129
Hin1II CATG 9 cut(s) 84, 258, 286, 444, 640, 911, 1093, 1255, 1278
HinfI GANTC 3 cut(s) 166, 897, 991
HpaII CCGG 1 cut(s) 129
HphI GGTGA 3 cut(s) 529, 1250, 1321
Hpy166II GTNNAC 1 cut(s) 873
Hpy188I TCNGA 4 cut(s) 22, 521, 896, 1159
Hpy188III TCNNGA 4 cut(s) 170, 321, 478, 1262
Hpy8I GTNNAC 1 cut(s) 873
HpyAV CCTTC 3 cut(s) 349, 727, 1215
HpyCH4III ACNGT 2 cut(s) 367, 517
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 8 cut(s) 410, 420, 497, 660, 1003, 1153, 1181, 1367
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 1159
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 9 cut(s) 84, 258, 286, 444, 640, 911, 1093, 1255, 1278
Kzo9I GATC 6 cut(s) 29, 121, 358, 444, 480, 915
LmnI GCTCC 6 cut(s) 4, 279, 290, 789, 862, 1167
Lsp1109I GCAGC 5 cut(s) 60, 404, 481, 728, 749
LweI GCATC 4 cut(s) 103, 1168, 1190, 1255
MaeI CTAG 1 cut(s) 876
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 4 cut(s) 190, 652, 946, 1238
MalI GATC 6 cut(s) 31, 123, 360, 446, 482, 917
MboI GATC 6 cut(s) 29, 121, 358, 444, 480, 915
MboII GAAGA 2 cut(s) 925, 1327
MfeI CAATTG 1 cut(s) 1243
MflI RGATCY 3 cut(s) 29, 358, 444
MhlI GDGCHC 2 cut(s) 295, 1164
MlyI GAGTC 2 cut(s) 160, 906
MmeI TCCRAC 3 cut(s) 143, 149, 386
MnlI CCTC 6 cut(s) 18, 724, 870, 1149, 1227, 1269
Mph1103I ATGCAT 2 cut(s) 1183, 1369
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 4 cut(s) 144, 201, 1076, 1233
MslI CAYNNNNRTG 3 cut(s) 247, 906, 1088
MspA1I CMGCKG 2 cut(s) 611, 827
MspI CCGG 1 cut(s) 129
MunI CAATTG 1 cut(s) 1243
MvaI CCWGG 9 cut(s) 234, 384, 449, 552, 558, 646, 677, 786, 840
MwoI GCNNNNNNNGC 2 cut(s) 113, 1159
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 1274
NdeI CATATG 1 cut(s) 882
NdeII GATC 6 cut(s) 29, 121, 358, 444, 480, 915
NlaIII CATG 9 cut(s) 84, 258, 286, 444, 640, 911, 1093, 1255, 1278
NlaIV GGNNCC 7 cut(s) 6, 31, 360, 388, 446, 453, 629
NmuCI GTSAC 2 cut(s) 946, 1238
NsiI ATGCAT 2 cut(s) 1183, 1369
NspI RCATGY 1 cut(s) 911
NspV TTCGAA 1 cut(s) 1171
PasI CCCWGGG 1 cut(s) 785
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 1 cut(s) 991
PflMI CCANNNNNTGG 1 cut(s) 1095
PfoI TCCNGGA 2 cut(s) 447, 838
PkrI GCNGC 5 cut(s) 50, 419, 496, 743, 764
PleI GAGTC 2 cut(s) 160, 905
PpsI GAGTC 2 cut(s) 160, 905
PpuMI RGGWCCY 2 cut(s) 451, 836
PsiI TTATAA 1 cut(s) 1113
Psp124BI GAGCTC 1 cut(s) 1164
Psp1406I AACGTT 1 cut(s) 651
Psp5II RGGWCCY 2 cut(s) 451, 836
Psp6I CCWGG 9 cut(s) 232, 382, 447, 550, 556, 644, 675, 784, 838
PspFI CCCAGC 1 cut(s) 454
PspGI CCWGG 9 cut(s) 232, 382, 447, 550, 556, 644, 675, 784, 838
PspN4I GGNNCC 7 cut(s) 6, 31, 360, 388, 446, 453, 629
PspPI GGNCC 6 cut(s) 451, 554, 627, 836, 865, 1136
PspPPI RGGWCCY 2 cut(s) 451, 836
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 3 cut(s) 26, 785, 839
PsuI RGATCY 3 cut(s) 29, 358, 444
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 2 cut(s) 874, 932
RsaNI GTAC 2 cut(s) 873, 931
RseI CAYNNNNRTG 3 cut(s) 247, 906, 1088
SacI GAGCTC 1 cut(s) 1164
SaqAI TTAA 4 cut(s) 144, 201, 1076, 1233
SatI GCNGC 5 cut(s) 49, 418, 495, 742, 763
Sau3AI GATC 6 cut(s) 29, 121, 358, 444, 480, 915
Sau96I GGNCC 6 cut(s) 451, 554, 627, 836, 865, 1136
ScaI AGTACT 1 cut(s) 932
SchI GAGTC 2 cut(s) 160, 906
SduI GDGCHC 2 cut(s) 295, 1164
SfaNI GCATC 4 cut(s) 103, 1168, 1190, 1255
SfcI CTRYAG 3 cut(s) 99, 495, 777
SfuI TTCGAA 1 cut(s) 1171
SinI GGWCC 4 cut(s) 451, 627, 836, 865
SmiMI CAYNNNNRTG 3 cut(s) 247, 906, 1088
SsiI CCGC 2 cut(s) 611, 1323
SspMI CTAG 1 cut(s) 876
SstI GAGCTC 1 cut(s) 1164
StyI CCWWGG 1 cut(s) 1274
TaaI ACNGT 2 cut(s) 367, 517
TaiI ACGT 1 cut(s) 654
TaqI TCGA 3 cut(s) 217, 1171, 1219
TatI WGTACW 2 cut(s) 872, 930
TfiI GAWTC 1 cut(s) 991
Tru1I TTAA 4 cut(s) 144, 201, 1076, 1233
Tru9I TTAA 4 cut(s) 144, 201, 1076, 1233
TscAI CASTG 4 cut(s) 31, 490, 875, 1090
TseFI GTSAC 2 cut(s) 946, 1238
TseI GCWGC 5 cut(s) 48, 417, 494, 741, 762
Tsp45I GTSAC 2 cut(s) 946, 1238
TspDTI ATGAA 4 cut(s) 69, 449, 989, 1307
TspRI CASTG 4 cut(s) 31, 490, 875, 1090
Van91I CCANNNNNTGG 1 cut(s) 1095
VpaK11BI GGWCC 4 cut(s) 451, 627, 836, 865
XapI RAATTY 2 cut(s) 958, 1285
XceI RCATGY 1 cut(s) 911
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 1 cut(s) 876
ZrmI AGTACT 1 cut(s) 932
Zsp2I ATGCAT 2 cut(s) 1183, 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.