Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007830

Physical Location & Seq

Genomic Coordinates Reverse (-)

24565482 .. 24566615

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCATGGCCGACAAAAAATATGGAAACTGTGACGGTAAAGTCGCCGGGAAAAGCCAGCAAGGTACACTAGTTGAAAAGGAGCAAGTAGATACCGCTTCTACATCCTGGAGAATTGATCTCGCAAAGGTTGACGTTTGGTATGCCTCTTACGGATCCAACATGTGGAAACCGAGGTTTATTTGCTATATTCAAGGGGGACAAGCCGAGGGAATGATAAAAGCATGTGTCGGTTCAATGGACAAAAGTCCACCAAAGGAAATAATGTGGAAAACATTTCCACATCGATTGTTATTTGGCCGTGAAACTTCAATGTTTTGGGGTGTAGGAGGAGTTGCTTACACCAATCCCCTTACTAATCTCAATGATCAAACTCACATGTGTTTGTACAGAATCACGCTTGAGCAATTCAACGACCTTCTGTTTCAAGAAAATGAGTTGAACGTAGATTCTGATTATCCGTTCTTTGATCTAGCTGCTCTGCGGTTAGCAGAGAAGGAAGGATCCATTTCACTTCAAACTGCTTCGGATAGTTTGTATGGGAATGTTGTCTGCTTGGGGAAAGAAGGCGTCATTCCTATACTTACATTGACTTGCACGCTTTCTGTTGTTGAGAAATTCAAATCGGGTGAGATCCCTATAAGACCTCCTGCAAAAGCCTATGCCAACACTTTAATAAGGGGACTTGTGAAAGGGGGAAGATTCTCTATAGAAGAAGCTGAGGCTTACATAGACAATGCTGCGTCTAAACCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006338 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0022622 GO:0030154 GO:0030856 GO:0032501 GO:0032502 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098732 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

252

Amino Acids

27.94

Weight (kDa)

5.82

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61050 AT5G61060 AT5G61060
fragaria_vesca	FvH4_5g13910 FvH4_5g13910 FvH4_5g13910
malus_domestica	MD06G1202300.v1.1 MD14G1211400.v1.1
prunus_persica	Prupe.5G204500_v2.0.a1 Prupe.5G204500_v2.0.a1
pyrus_communis	pycom06g17830 pycom07g03000 pycom07g07960 pycom14g17500
rosa_chinensis	RchiOBHm_Chr7g0183031
rosa_laevigata	RLG00000005086
rosa_multiflora	Rmu_sc0000014.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270830
rosa_rugosa	Rorug06G0451900
rosa_samantha	Rh7AG055400 Rh7BG054800 Rh7CG056100 Rh7DG054900
rosa_wichuraiana	Rw7G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	165
AciI	CCGC	2 cut(s)	96, 484
AclWI	GGATC	5 cut(s)	150, 163, 498, 511, 628
AcoI	YGGCCR	3 cut(s)	3, 9, 298
AcsI	RAATTY	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	2 cut(s)	67, 389
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	2 cut(s)	162, 378
AgsI	TTSAA	9 cut(s)	77, 194, 237, 312, 412, 428, 442, 518, 622
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	476, 719
AluI	AGCT	2 cut(s)	476, 719
AlwI	GGATC	5 cut(s)	150, 163, 498, 511, 628
AoxI	GGCC	3 cut(s)	3, 9, 298
ApeKI	GCWGC	2 cut(s)	476, 740
ApoI	RAATTY	1 cut(s)	617
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	641
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	155, 503
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	2 cut(s)	463, 727
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	109
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	3 cut(s)	71, 473, 757
BfmI	CTRYAG	1 cut(s)	708
BisI	GCNGC	2 cut(s)	477, 741
BlsI	GCNGC	2 cut(s)	478, 742
Bme1390I	CCNGG	2 cut(s)	49, 109
BmiI	GGNNCC	2 cut(s)	157, 505
BmrFI	CCNGG	2 cut(s)	49, 109
BoxI	GACNNNNGTC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	570
BsaJI	CCNNGG	3 cut(s)	6, 173, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	286
BseDI	CCNNGG	3 cut(s)	6, 173, 207
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	711
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	463, 727
BshFI	GGCC	3 cut(s)	5, 11, 300
BshVI	ATCGAT	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	213, 696
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	213, 696
BsnI	GGCC	3 cut(s)	5, 11, 300
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	6 cut(s)	118, 155, 367, 469, 503, 633
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	96, 484
BspANI	GGCC	3 cut(s)	5, 11, 300
BspCNI	CTCAG	1 cut(s)	712
BspDI	ATCGAT	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	157, 505
BspPI	GGATC	5 cut(s)	150, 163, 498, 511, 628
BsrGI	TGTACA	1 cut(s)	387
BssECI	CCNNGG	3 cut(s)	6, 173, 207
BssMI	GATC	6 cut(s)	118, 155, 367, 469, 503, 633
BssNI	GRCGYC	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	32, 38
BstACI	GRCGYC	1 cut(s)	570
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	59, 599
BstDEI	CTNAG	1 cut(s)	720
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	6 cut(s)	121, 158, 370, 472, 506, 636
BstMBI	GATC	6 cut(s)	118, 155, 367, 469, 503, 633
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	3 cut(s)	166, 228, 382
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	47, 107
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	463, 727
BstX2I	RGATCY	3 cut(s)	155, 503, 633
BstYI	RGATCY	3 cut(s)	155, 503, 633
Bsu15I	ATCGAT	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	5, 11, 300
BsuTUI	ATCGAT	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	59, 599
ClaI	ATCGAT	1 cut(s)	286
CseI	GACGC	2 cut(s)	559, 732
Csp6I	GTAC	2 cut(s)	66, 388
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	4 cut(s)	7, 163, 225, 379
CviJI	RGCY	9 cut(s)	5, 11, 57, 206, 300, 476, 659, 719, 725
CviKI_1	RGCY	9 cut(s)	5, 11, 57, 206, 300, 476, 659, 719, 725
CviQI	GTAC	2 cut(s)	66, 388
DdeI	CTNAG	1 cut(s)	720
DpnI	GATC	6 cut(s)	120, 157, 369, 471, 505, 635
DpnII	GATC	6 cut(s)	118, 155, 367, 469, 503, 633
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	3 cut(s)	3, 9, 298
Eco130I	CCWWGG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	4 cut(s)	10, 166, 228, 382
FaqI	GGGAC	2 cut(s)	213, 696
FatI	CATG	4 cut(s)	6, 162, 224, 378
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	477, 741
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	477, 741
FspBI	CTAG	3 cut(s)	71, 473, 757
GluI	GCNGC	2 cut(s)	477, 741
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	5, 11, 300
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	2 cut(s)	559, 732
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	4 cut(s)	10, 166, 228, 382
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	393, 449, 702
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	3 cut(s)	68, 133, 251
Hpy188I	TCNGA	2 cut(s)	454, 529
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	3 cut(s)	68, 133, 251
HpyAV	CCTTC	4 cut(s)	428, 490, 494, 560
HpyCH4III	ACNGT	2 cut(s)	32, 38
HpyCH4IV	ACGT	2 cut(s)	135, 444
HpyCH4V	TGCA	2 cut(s)	597, 653
HpyF3I	CTNAG	1 cut(s)	720
HpySE526I	ACGT	2 cut(s)	135, 444
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	4 cut(s)	10, 166, 228, 382
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	6 cut(s)	118, 155, 367, 469, 503, 633
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	61, 71, 94, 121, 663
Lsp1109I	GCAGC	2 cut(s)	463, 727
MaeI	CTAG	3 cut(s)	71, 473, 757
MaeII	ACGT	2 cut(s)	135, 444
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	6 cut(s)	120, 157, 369, 471, 505, 635
MboI	GATC	6 cut(s)	118, 155, 367, 469, 503, 633
MboII	GAAGA	2 cut(s)	711, 725
MflI	RGATCY	3 cut(s)	155, 503, 633
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	114, 407, 617
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	6 cut(s)	157, 168, 202, 323, 657, 715
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	674
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	49, 109
MvaI	CCWGG	1 cut(s)	109
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	6 cut(s)	118, 155, 367, 469, 503, 633
NlaIII	CATG	4 cut(s)	10, 166, 228, 382
NlaIV	GGNNCC	2 cut(s)	157, 505
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	3 cut(s)	166, 228, 382
PciI	ACATGT	2 cut(s)	162, 378
PfeI	GAWTC	3 cut(s)	393, 449, 702
PflMI	CCANNNNNTGG	1 cut(s)	165
PfoI	TCCNGGA	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	478, 742
PscI	ACATGT	2 cut(s)	162, 378
PshAI	GACNNNNGTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	157, 505
PsuI	RGATCY	3 cut(s)	155, 503, 633
RsaI	GTAC	2 cut(s)	67, 389
RsaNI	GTAC	2 cut(s)	66, 388
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	2 cut(s)	477, 741
Sau3AI	GATC	6 cut(s)	118, 155, 367, 469, 503, 633
ScrFI	CCNGG	2 cut(s)	49, 109
SfcI	CTRYAG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	3 cut(s)	114, 407, 617
SsiI	CCGC	2 cut(s)	96, 484
SspMI	CTAG	3 cut(s)	71, 473, 757
StyD4I	CCNGG	2 cut(s)	47, 107
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	32, 38
TaiI	ACGT	2 cut(s)	138, 447
TaqI	TCGA	1 cut(s)	286
TasI	AATT	3 cut(s)	114, 407, 617
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	3 cut(s)	393, 449, 702
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	476, 740
Tsp45I	GTSAC	1 cut(s)	32
TspGWI	ACGGA	2 cut(s)	168, 450
Van91I	CCANNNNNTGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	3 cut(s)	166, 228, 382
XspI	CTAG	3 cut(s)	71, 473, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.