Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007830

Physical Location & Seq

Genomic Coordinates Forward (+)

58116163 .. 58118392

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0451900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGCCGAAGAAACCCATGTTTAATCTCTCTTTTCGGCTCGAAACCCCGAATCTGTGAATTTCAGGCGGCGAGTGCCAGAGGGAGGGTCGCAAAACACCTTCGGAACCAATTTCCGGCGTCAACTCCAATACATAAGATACCCAAGTTTGCTGAAAAAGTCATGTTGGAAAACAAAGTAAACTCAACTCATAGCAAGTCCACTGGTCTGCCTCGGAAGCGTTTCTACAGAGCAAGAGCACACAGTAACCCTCTGAGTGACTCCCACTTTCCAGTACCTGTCGCCCCCAGTCATGTGGATTATTCTCTTCATTACCCGCAGCTCTTCCCCTCATCTGATGAAGCTGGTAGTTGCAAAAAGATCCAGTTTGCAGATATTGGCTGTGGTTTTGGGGGGCTTCTGATAAGCCTTTCAACTCTTTTCCCTAGCACTCTGATGATTGGAATGGAGCTTAGGGATAAGGTGACAGAGTATGTCAAGGAAAGGATTTTGGCTTTAAGGGTGACAAATCTGGGTCAATACCAGAATATCTCAGTGGTTCGCACTAATTCCATGAAGTACATCCCAAATTACTTTGAGAAAGCACAGCTTTCAAAGATGTTTTTCCTGTTCCCGGATCCTCACTTCAAAGAGAAAAATCACCGTCGTAGGGTGATCAGTCCATTCTTGCTGGATGAGTATGCTTATGCTCTAGAAGTTGGTGGCATTATATACACAATAACAGATGTTGAAGAACTTGGAGACTGGATGAAGGCTTGTTTAGAAAATCACCCTATGTTTGAAGCTCTCACAAGTGAAGAGGTCGAAGCAGATCCAGTTACGAAGCTCTTGAGTTCTGCAACTGAGGAAGGACAGAAGGTCGACAGAAACGGGGGACAGACTTTCCGAGCAATTTACAGACGCATTGCTCCATCCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006338 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0022622 GO:0030154 GO:0030856 GO:0032501 GO:0032502 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098732 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

306

Amino Acids

34.66

Weight (kDa)

9.34

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_4	PF02390	121 - 296	2.4e-49	Putative methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61050 AT5G61060 AT5G61060
fragaria_vesca	FvH4_5g13910 FvH4_5g13910 FvH4_5g13910
malus_domestica	MD06G1202300.v1.1 MD14G1211400.v1.1
prunus_persica	Prupe.5G204500_v2.0.a1 Prupe.5G204500_v2.0.a1
pyrus_communis	pycom06g17830 pycom07g03000 pycom07g07960 pycom14g17500
rosa_chinensis	RchiOBHm_Chr7g0183031
rosa_laevigata	RLG00000005086
rosa_multiflora	Rmu_sc0000014.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270830
rosa_rugosa	Rorug06G0451900
rosa_samantha	Rh7AG055400 Rh7BG054800 Rh7CG056100 Rh7DG054900
rosa_wichuraiana	Rw7G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	861
AciI	CCGC	2 cut(s)	68, 317
AclWI	GGATC	4 cut(s)	355, 611, 624, 806
AcsI	RAATTY	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	276, 560
AfiI	CCNNNNNNNGG	4 cut(s)	84, 115, 613, 649
AgsI	TTSAA	5 cut(s)	414, 594, 628, 731, 782
AhdI	GACNNNNNGTC	1 cut(s)	857
AluBI	AGCT	6 cut(s)	322, 344, 451, 589, 785, 826
AluI	AGCT	6 cut(s)	322, 344, 451, 589, 785, 826
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	4 cut(s)	355, 611, 624, 806
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	5 cut(s)	475, 514, 632, 664, 761
BaeI	ACNNNNGTAYC	2 cut(s)	131, 164
BamHI	GGATCC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	919
BclI	TGATCA	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	735
BfaI	CTAG	2 cut(s)	426, 692
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	2 cut(s)	69, 320
BlsI	GCNGC	2 cut(s)	70, 321
Bme1390I	CCNGG	1 cut(s)	614
BmeRI	GACNNNNNGTC	1 cut(s)	857
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	107, 618
BmrFI	CCNGG	1 cut(s)	614
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	850
BpuMI	CCSGG	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 115, 613, 649
Bse1I	ACTGG	6 cut(s)	208, 272, 288, 364, 749, 815
Bse3DI	GCAATG	1 cut(s)	903
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	4 cut(s)	561, 679, 753, 911
BseLI	CCNNNNNNNGG	4 cut(s)	84, 115, 613, 649
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	3 cut(s)	245, 546, 834
BseNI	ACTGG	6 cut(s)	208, 272, 288, 364, 749, 815
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	116, 614
BslFI	GGGAC	1 cut(s)	888
BslI	CCNNNNNNNGG	4 cut(s)	84, 115, 613, 649
BsmAI	GTCTC	1 cut(s)	735
BsmFI	GGGAC	1 cut(s)	888
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	360, 616, 654, 811
BspACI	CCGC	2 cut(s)	68, 317
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	3 cut(s)	246, 545, 835
BspLI	GGNNCC	2 cut(s)	107, 618
BspPI	GGATC	4 cut(s)	355, 611, 624, 806
BspQI	GCTCTTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	6 cut(s)	208, 272, 288, 364, 749, 815
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	360, 616, 654, 811
BssNI	GRCGYC	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	245, 644
Bst6I	CTCTTC	3 cut(s)	312, 329, 792
BstACI	GRCGYC	1 cut(s)	119
BstDEI	CTNAG	4 cut(s)	254, 452, 532, 843
BstF5I	GGATG	4 cut(s)	561, 679, 753, 911
BstKTI	GATC	4 cut(s)	363, 619, 657, 814
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	4 cut(s)	360, 616, 654, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 217
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	3 cut(s)	360, 616, 811
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	3 cut(s)	360, 616, 811
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	4 cut(s)	561, 679, 753, 911
BtsIMutI	CAGTG	2 cut(s)	201, 540
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	108, 909
Csp6I	GTAC	2 cut(s)	275, 559
CviAII	CATG	4 cut(s)	18, 163, 293, 553
CviQI	GTAC	2 cut(s)	275, 559
DdeI	CTNAG	4 cut(s)	254, 452, 532, 843
DpnI	GATC	4 cut(s)	362, 618, 656, 813
DpnII	GATC	4 cut(s)	360, 616, 654, 811
DriI	GACNNNNNGTC	1 cut(s)	857
Eam1104I	CTCTTC	3 cut(s)	312, 329, 792
Eam1105I	GACNNNNNGTC	1 cut(s)	857
EarI	CTCTTC	3 cut(s)	312, 329, 792
FaeI	CATG	4 cut(s)	21, 166, 296, 556
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	888
FatI	CATG	4 cut(s)	17, 162, 292, 552
FauI	CCCGC	1 cut(s)	324
FbaI	TGATCA	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	69, 320
FokI	GGATG	4 cut(s)	548, 686, 760, 898
Fsp4HI	GCNGC	2 cut(s)	69, 320
FspBI	CTAG	2 cut(s)	426, 692
GluI	GCNGC	2 cut(s)	69, 320
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	2 cut(s)	116, 614
HgaI	GACGC	2 cut(s)	108, 909
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	21, 166, 296, 556
HincII	GTYRAC	2 cut(s)	123, 862
HindII	GTYRAC	2 cut(s)	123, 862
HinfI	GANTC	2 cut(s)	51, 260
HpaII	CCGG	2 cut(s)	116, 614
HphI	GGTGA	5 cut(s)	475, 514, 632, 664, 761
Hpy166II	GTNNAC	4 cut(s)	123, 181, 201, 862
Hpy188I	TCNGA	7 cut(s)	105, 216, 255, 337, 402, 435, 887
Hpy188III	TCNNGA	2 cut(s)	692, 829
Hpy8I	GTNNAC	4 cut(s)	123, 181, 201, 862
Hpy99I	CGWCG	1 cut(s)	648
HpyAV	CCTTC	4 cut(s)	110, 745, 842, 850
HpyCH4III	ACNGT	2 cut(s)	245, 644
HpyCH4V	TGCA	3 cut(s)	354, 371, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 217
HpyF3I	CTNAG	4 cut(s)	254, 452, 532, 843
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	4 cut(s)	21, 166, 296, 556
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	360, 616, 654, 811
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	448, 913
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	426, 692
MaeIII	GTNAC	5 cut(s)	245, 257, 463, 502, 817
MalI	GATC	4 cut(s)	362, 618, 656, 813
MboI	GATC	4 cut(s)	360, 616, 654, 811
MboII	GAAGA	5 cut(s)	21, 299, 316, 743, 809
MflI	RGATCY	3 cut(s)	360, 616, 811
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	5 cut(s)	59, 110, 547, 568, 891
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	74, 78, 222, 261, 340, 630, 793, 838
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	2 cut(s)	23, 497
MslI	CAYNNNNRTG	2 cut(s)	434, 916
MspI	CCGG	2 cut(s)	116, 614
MspR9I	CCNGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	74, 217
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	4 cut(s)	360, 616, 654, 811
NlaIII	CATG	4 cut(s)	21, 166, 296, 556
NlaIV	GGNNCC	2 cut(s)	107, 618
NmuCI	GTSAC	3 cut(s)	257, 463, 502
PciSI	GCTCTTC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	51
PfoI	TCCNGGA	1 cut(s)	612
PkrI	GCNGC	2 cut(s)	70, 321
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	107, 618
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	3 cut(s)	360, 616, 811
RsaI	GTAC	2 cut(s)	276, 560
RsaNI	GTAC	2 cut(s)	275, 559
RseI	CAYNNNNRTG	2 cut(s)	434, 916
SalI	GTCGAC	1 cut(s)	860
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	23, 497
SatI	GCNGC	2 cut(s)	69, 320
Sau3AI	GATC	4 cut(s)	360, 616, 654, 811
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	434, 916
SmlI	CTYRAG	1 cut(s)	829
SmoI	CTYRAG	1 cut(s)	829
Sse9I	AATT	5 cut(s)	59, 110, 547, 568, 891
SsiI	CCGC	2 cut(s)	68, 317
SspMI	CTAG	2 cut(s)	426, 692
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	245, 644
TaqI	TCGA	3 cut(s)	41, 804, 861
TasI	AATT	5 cut(s)	59, 110, 547, 568, 891
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	23, 497
Tru9I	TTAA	2 cut(s)	23, 497
TscAI	CASTG	2 cut(s)	208, 540
TseFI	GTSAC	3 cut(s)	257, 463, 502
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	3 cut(s)	257, 463, 502
TspDTI	ATGAA	4 cut(s)	299, 354, 569, 764
TspRI	CASTG	2 cut(s)	208, 540
XapI	RAATTY	1 cut(s)	59
XbaI	TCTAGA	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	861
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	2 cut(s)	426, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.