Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007830

Physical Location & Seq

Genomic Coordinates Forward (+)

21762352 .. 21764226

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTTTTTCCTGTACTTTCTGTTGGGTTATCCATTTCTCCTTGTACTTATTCTACCTGATTTTATTTCTTGTGAGTCAATTCTTTTTTTCTTTGATGCATATGTTATTTTTTTCCAGGTTCGCCGGAAACTAAGTGCTTTCTGGCCATCACTTGCAGATAAATTACCTGAGACGCTAACCAATCAAACAGCTCCTCCAGCTTCATATATTGTGACCTCAAGCTCTGATTCTGAAGCGGAGGACAACGAAGATCCAAATGTCATATCTAAACATCTTGAGGATATTCTTCAAGATGTTAAAGAGCCCTTCTCGAAGTTGAAACTTGACGGAAGTATTCAAGATCATGTGGCAAGTAATTCTTGCACCTGGAGGTCAGAGCTTTCAAAGGTCGATATTTGGTATGCCTCTTTCGGATCAAATCTGTGTCTGGAAAGATTTCTCTGCTATATTAAAGGTGGACAGATGGAAGGTATGAAAACGCCATTTCTTGGGTGTGTGGACAAAACTCCCCCAAAGGAGATTGTGTGGAAGGCTTTCCCTCATCGCTTGTTCTTTGGTCGTGAATCTACAGCTACATGGGGTCCTGGAGGGGTTGCTTTCCTTAATCCCGAAAGCAACATCCAGGATAAGGCTTATATGTGCCTGTATAGAATTACGCTTGAGCAGTTTAACGATGTATTGGTCCAGGAAAACGTTGTGAGTTTTCCTGCGAACTCTCCTTTGTTTGACTTGACTGGTTTAGACTCAGTCACTCGTGAGGAGCGGCATTCTTTACAGGTTCAACTAAAGTGTTGGTACAGTAATGTTGTCTACTTGGGCAAGGAGCATGATATTCCAATACTAACAATGACGTATGCGTCAAAGATTTCAGTTTTCATCTTCTCTTTCATTTTTCTGTTTTCTTTTTTGTCATTAGTGTTATCTTGTCGATTTACTTGTGAAATCATTACAAGTAGTGAGAACTCAATCCCTTTGGTCGTCTTTCATTTAATAATATGCAGGTGTACAAAATCAGAAATGGATGGCTACAAATCCGGAGAGCTTCCATTGTGTGCTCCGGCCAAAAATTACGTCAACACAATTGCGAGGGGCTTGGTGGAAGGAAAACAACTCACACAGGGGGCGGCTATGGCTTACTTACAAGAAGCTTCTGTTAAACCATTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006338 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0022622 GO:0030154 GO:0030856 GO:0032501 GO:0032502 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098732 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

390

Amino Acids

43.96

Weight (kDa)

5.29

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61050 AT5G61060 AT5G61060
fragaria_vesca	FvH4_5g13910 FvH4_5g13910 FvH4_5g13910
malus_domestica	MD06G1202300.v1.1 MD14G1211400.v1.1
prunus_persica	Prupe.5G204500_v2.0.a1 Prupe.5G204500_v2.0.a1
pyrus_communis	pycom06g17830 pycom07g03000 pycom07g07960 pycom14g17500
rosa_chinensis	RchiOBHm_Chr7g0183031
rosa_laevigata	RLG00000005086
rosa_multiflora	Rmu_sc0000014.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270830
rosa_rugosa	Rorug06G0451900
rosa_samantha	Rh7AG055400 Rh7BG054800 Rh7CG056100 Rh7DG054900
rosa_wichuraiana	Rw7G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	990
AasI	GACNNNNNNGTC	1 cut(s)	856
Acc36I	ACCTGC	1 cut(s)	990
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	810
AccIII	TCCGGA	1 cut(s)	1034
AciI	CCGC	3 cut(s)	236, 763, 1124
AclI	AACGTT	1 cut(s)	693
AclWI	GGATC	2 cut(s)	245, 421
AcoI	YGGCCR	2 cut(s)	143, 1059
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	4 cut(s)	14, 45, 797, 1006
AfiI	CCNNNNNNNGG	2 cut(s)	488, 628
AgsI	TTSAA	5 cut(s)	290, 319, 338, 384, 782
AjnI	CCWGG	5 cut(s)	114, 365, 583, 621, 684
AluBI	AGCT	7 cut(s)	191, 200, 222, 379, 572, 1042, 1148
AluI	AGCT	7 cut(s)	191, 200, 222, 379, 572, 1042, 1148
Alw21I	GWGCWC	1 cut(s)	1057
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	245, 421
Aor13HI	TCCGGA	1 cut(s)	1034
AoxI	GGCC	2 cut(s)	143, 1059
ArsI	GACNNNNNNTTYG	2 cut(s)	1056, 1088
Asp700I	GAANNNNTTC	2 cut(s)	435, 533
AspS9I	GGNCC	2 cut(s)	581, 682
AvaII	GGWCC	2 cut(s)	581, 682
BalI	TGGCCA	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	1057
BccI	CCATC	3 cut(s)	154, 457, 1016
BciT130I	CCWGG	5 cut(s)	116, 367, 585, 623, 686
BcoDI	GTCTC	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	990
BisI	GCNGC	2 cut(s)	764, 1125
BlsI	GCNGC	2 cut(s)	765, 1126
Bme1390I	CCNGG	5 cut(s)	116, 367, 585, 623, 686
Bme18I	GGWCC	2 cut(s)	581, 682
BmgT120I	GGNCC	2 cut(s)	581, 682
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	5 cut(s)	116, 367, 585, 623, 686
BmsI	GCATC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	3 cut(s)	180, 388, 606
BpuEI	CTTGAG	3 cut(s)	202, 296, 680
BsaWI	WCCGGW	1 cut(s)	1034
BsaXI	ACNNNNNCTCC	4 cut(s)	178, 208, 509, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	488, 628
Bse1I	ACTGG	1 cut(s)	739
BseAI	TCCGGA	1 cut(s)	1034
BseBI	CCWGG	5 cut(s)	116, 367, 585, 623, 686
BseGI	GGATG	2 cut(s)	618, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	488, 628
BseMII	CTCAG	2 cut(s)	159, 759
BseNI	ACTGG	1 cut(s)	739
BseRI	GAGGAG	2 cut(s)	183, 773
BshFI	GGCC	2 cut(s)	145, 1061
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiSI	CCGG	3 cut(s)	124, 1035, 1058
BslI	CCNNNNNNNGG	2 cut(s)	488, 628
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	145, 1061
Bsp1286I	GDGCHC	2 cut(s)	306, 1057
Bsp13I	TCCGGA	1 cut(s)	1034
Bsp1407I	TGTACA	1 cut(s)	1004
Bsp143I	GATC	3 cut(s)	250, 340, 413
BspACI	CCGC	3 cut(s)	236, 763, 1124
BspANI	GGCC	2 cut(s)	145, 1061
BspCNI	CTCAG	2 cut(s)	160, 758
BspEI	TCCGGA	1 cut(s)	1034
BspLI	GGNNCC	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	990
BspPI	GGATC	2 cut(s)	245, 421
BsrBI	CCGCTC	1 cut(s)	763
BsrGI	TGTACA	1 cut(s)	1004
BsrI	ACTGG	1 cut(s)	739
BssMI	GATC	3 cut(s)	250, 340, 413
BssSI	CACGAG	1 cut(s)	753
Bst2BI	CACGAG	1 cut(s)	753
Bst2UI	CCWGG	5 cut(s)	116, 367, 585, 623, 686
Bst4CI	ACNGT	1 cut(s)	800
BstAUI	TGTACA	1 cut(s)	1004
BstDEI	CTNAG	3 cut(s)	131, 168, 745
BstF5I	GGATG	2 cut(s)	618, 1027
BstKTI	GATC	3 cut(s)	253, 343, 416
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	250, 340, 413
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 1130
BstNI	CCWGG	5 cut(s)	116, 367, 585, 623, 686
BstSCI	CCNGG	5 cut(s)	114, 365, 583, 621, 684
BstSFI	CTRYAG	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	145, 1061
BtgZI	GCGATG	1 cut(s)	527
BtsCI	GGATG	2 cut(s)	618, 1027
BveI	ACCTGC	1 cut(s)	990
Cfr13I	GGNCC	2 cut(s)	581, 682
CseI	GACGC	2 cut(s)	181, 846
Csp6I	GTAC	4 cut(s)	13, 44, 796, 1005
CviAII	CATG	3 cut(s)	344, 576, 827
CviQI	GTAC	4 cut(s)	13, 44, 796, 1005
DdeI	CTNAG	3 cut(s)	131, 168, 745
DpnI	GATC	3 cut(s)	252, 342, 415
DpnII	GATC	3 cut(s)	250, 340, 413
DrdI	GACNNNNNNGTC	1 cut(s)	856
DseDI	GACNNNNNNGTC	1 cut(s)	856
EaeI	YGGCCR	2 cut(s)	143, 1059
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	581, 682
Eco57I	CTGAAG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRII	CCWGG	5 cut(s)	114, 365, 583, 621, 684
EcoT22I	ATGCAT	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	3 cut(s)	347, 579, 830
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FatI	CATG	3 cut(s)	343, 575, 826
FauNDI	CATATG	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	2 cut(s)	764, 1125
FokI	GGATG	2 cut(s)	605, 1034
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	764, 1125
GluI	GCNGC	2 cut(s)	764, 1125
GsuI	CTGGAG	3 cut(s)	180, 388, 606
HaeIII	GGCC	2 cut(s)	145, 1061
HapII	CCGG	3 cut(s)	124, 1035, 1058
HgaI	GACGC	2 cut(s)	181, 846
Hin1II	CATG	3 cut(s)	347, 579, 830
HincII	GTYRAC	1 cut(s)	1075
HindII	GTYRAC	1 cut(s)	1075
HindIII	AAGCTT	1 cut(s)	1146
HinfI	GANTC	4 cut(s)	74, 227, 563, 743
HpaII	CCGG	3 cut(s)	124, 1035, 1058
Hpy166II	GTNNAC	5 cut(s)	458, 499, 811, 1005, 1075
Hpy188I	TCNGA	5 cut(s)	226, 232, 376, 413, 1015
Hpy188III	TCNNGA	9 cut(s)	275, 290, 310, 338, 428, 560, 608, 755, 1035
Hpy8I	GTNNAC	5 cut(s)	458, 499, 811, 1005, 1075
HpyAV	CCTTC	4 cut(s)	316, 461, 523, 1094
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4IV	ACGT	3 cut(s)	693, 851, 1071
HpyCH4V	TGCA	4 cut(s)	98, 155, 363, 999
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 1130
HpyF3I	CTNAG	3 cut(s)	131, 168, 745
HpySE526I	ACGT	3 cut(s)	693, 851, 1071
Hsp92II	CATG	3 cut(s)	347, 579, 830
Kpn2I	TCCGGA	1 cut(s)	1034
Kzo9I	GATC	3 cut(s)	250, 340, 413
LmnI	GCTCC	4 cut(s)	196, 760, 823, 1060
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	3 cut(s)	693, 851, 1071
MaeIII	GTNAC	2 cut(s)	211, 748
MalI	GATC	3 cut(s)	252, 342, 415
MbiI	CCGCTC	1 cut(s)	763
MboI	GATC	3 cut(s)	250, 340, 413
MboII	GAAGA	3 cut(s)	260, 278, 871
MfeI	CAATTG	1 cut(s)	1080
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	306, 1057
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	6 cut(s)	78, 161, 355, 651, 1066, 1080
MluNI	TGGCCA	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	83, 737
Mox20I	TGGCCA	1 cut(s)	145
Mph1103I	ATGCAT	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	1034
MroXI	GAANNNNTTC	2 cut(s)	435, 533
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	6 cut(s)	297, 450, 603, 669, 989, 1155
MslI	CAYNNNNRTG	1 cut(s)	1165
Msp20I	TGGCCA	1 cut(s)	145
MspI	CCGG	3 cut(s)	124, 1035, 1058
MspR9I	CCNGG	5 cut(s)	116, 367, 585, 623, 686
MunI	CAATTG	1 cut(s)	1080
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	5 cut(s)	116, 367, 585, 623, 686
MwoI	GCNNNNNNNGC	2 cut(s)	197, 1130
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	3 cut(s)	250, 340, 413
NlaIII	CATG	3 cut(s)	347, 579, 830
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	211, 748
NsiI	ATGCAT	1 cut(s)	100
PaqCI	CACCTGC	1 cut(s)	990
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	2 cut(s)	435, 533
PfeI	GAWTC	2 cut(s)	227, 563
PflFI	GACNNNGTC	1 cut(s)	746
PflMI	CCANNNNNTGG	1 cut(s)	488
PfoI	TCCNGGA	3 cut(s)	583, 621, 684
PkrI	GCNGC	2 cut(s)	765, 1126
PleI	GAGTC	2 cut(s)	82, 737
PpsI	GAGTC	2 cut(s)	82, 737
PpuMI	RGGWCCY	1 cut(s)	581
Psp1406I	AACGTT	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	5 cut(s)	114, 365, 583, 621, 684
PspGI	CCWGG	5 cut(s)	114, 365, 583, 621, 684
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	581, 682
PspPPI	RGGWCCY	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	746
RsaI	GTAC	4 cut(s)	14, 45, 797, 1006
RsaNI	GTAC	4 cut(s)	13, 44, 796, 1005
RseI	CAYNNNNRTG	1 cut(s)	1165
SaqAI	TTAA	6 cut(s)	297, 450, 603, 669, 989, 1155
SatI	GCNGC	2 cut(s)	764, 1125
Sau3AI	GATC	3 cut(s)	250, 340, 413
Sau96I	GGNCC	2 cut(s)	581, 682
SchI	GAGTC	2 cut(s)	83, 737
ScrFI	CCNGG	5 cut(s)	116, 367, 585, 623, 686
SduI	GDGCHC	2 cut(s)	306, 1057
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	2 cut(s)	581, 682
SmiMI	CAYNNNNRTG	1 cut(s)	1165
SmlI	CTYRAG	3 cut(s)	217, 275, 659
SmoI	CTYRAG	3 cut(s)	217, 275, 659
Sse9I	AATT	6 cut(s)	78, 161, 355, 651, 1066, 1080
SsiI	CCGC	3 cut(s)	236, 763, 1124
StyD4I	CCNGG	5 cut(s)	114, 365, 583, 621, 684
TaaI	ACNGT	1 cut(s)	800
TaiI	ACGT	3 cut(s)	696, 854, 1074
TaqI	TCGA	3 cut(s)	311, 390, 928
TasI	AATT	6 cut(s)	78, 161, 355, 651, 1066, 1080
TatI	WGTACW	3 cut(s)	12, 43, 1004
TauI	GCSGC	2 cut(s)	766, 1127
TfiI	GAWTC	2 cut(s)	227, 563
Tru1I	TTAA	6 cut(s)	297, 450, 603, 669, 989, 1155
Tru9I	TTAA	6 cut(s)	297, 450, 603, 669, 989, 1155
TseFI	GTSAC	2 cut(s)	211, 748
Tsp45I	GTSAC	2 cut(s)	211, 748
TspDTI	ATGAA	5 cut(s)	192, 488, 865, 877, 974
TspGWI	ACGGA	1 cut(s)	342
Tth111I	GACNNNGTC	1 cut(s)	746
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	581, 682
XmiI	GTMKAC	1 cut(s)	810
XmnI	GAANNNNTTC	2 cut(s)	435, 533
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.