Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016129

Physical Location & Seq

Genomic Coordinates Reverse (-)

24812804 .. 24813436

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAGTTCTTCGTCGTGATCGTGTTTTGTGCAATCTTCTTATCTGTCTCTGGGGATTCGGACAATATGCAGGACACATGTCCCACGGCTCCGGGAGAACAGAGCATCTTCTTCATCAACGGCTATCCTTGCAAGAACCCGACCAAGATTACCGCTCAGGATTTCAAGTCCACCAAACTTACAGAAGCTGGAGATACAGACAATTATCTCCAGTCGAATGTCACATTGCTCACTGCATTAGAGTTTCCAGGTCTCAACACTCTTGGCCTCTCGGTCTCACGGACTGATCTTGAAAGGGACGGATCTGTGCCGTTCCATTCGCATCCGAGGTCATCTGAGATGCTCTTTGTGGTCAAAGGAGTCGTGTTTGCTGGATTTGTGGATACTAACAACAAGATTTTTCAAACGGTTCTGCAAAAAGGCGATGTTTTTGTCTTCCCTAAAGGATTGCTTCATTTCTGCTTGAGCGGTGGCTTTGAACCAGCCACCGCTTTCTCGTTTTACAATAGCCAGAATCCTGGAGTCGTGAATATTGGAGAAGTTTTTGGGATCGATCAAGAGCATATAAAGATCATGACGAGGTGTTTAGCTACTGGCTCTGGCTGTAGGGTCACTGACGGTGATGAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

210

Amino Acids

22.89

Weight (kDa)

4.99

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	59 - 180	1.7e-35	Cupin
Cupin_2	PF07883	97 - 165	4.9e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61750
fragaria_vesca	FvH4_5g09990
malus_domestica	MD14G1144300.v1.1
prunus_persica	Prupe.5G138500_v2.0.a1
pyrus_communis	pycom14g11990
rosa_chinensis	RchiOBHm_Chr7g0188271
rosa_laevigata	RLG00000004712
rosa_multiflora	Rmu_sc0008750.1_g000009
rosa_roxburghii	Rroxscaffold_3G00266540
rosa_rugosa	Rorug06G0489600
rosa_samantha	Rh7AG094000 Rh7BG095400 Rh7CG095800 Rh7DG096000
rosa_wichuraiana	Rw7G008100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	155, 468
AciI	CCGC	3 cut(s)	153, 468, 489
AclWI	GGATC	2 cut(s)	310, 557
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	166, 293, 404, 479
AjnI	CCWGG	2 cut(s)	247, 517
AluBI	AGCT	3 cut(s)	188, 590, 628
AluI	AGCT	3 cut(s)	188, 590, 628
Alw26I	GTCTC	3 cut(s)	52, 257, 280
AlwI	GGATC	2 cut(s)	310, 557
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	427
BceAI	ACGGC	3 cut(s)	102, 136, 295
BciT130I	CCWGG	2 cut(s)	249, 519
BciVI	GTATCC	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	52, 257, 280
BfmI	CTRYAG	1 cut(s)	604
BfuI	GTATCC	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	93, 249, 519
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	3 cut(s)	93, 249, 519
BmsI	GCATC	3 cut(s)	114, 330, 331
BoxI	GACNNNNGTC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	427
BpmI	CTGGAG	3 cut(s)	194, 210, 540
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	552
BsaI	GGTCTC	2 cut(s)	257, 280
BsaJI	CCNNGG	2 cut(s)	84, 326
Bse1I	ACTGG	2 cut(s)	211, 598
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	249, 519
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	84, 326
BseGI	GGATG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	2 cut(s)	170, 327
BseNI	ACTGG	2 cut(s)	211, 598
BshFI	GGCC	1 cut(s)	267
BshVI	ATCGAT	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	66, 311
BsmAI	GTCTC	3 cut(s)	52, 257, 280
BsmFI	GGGAC	2 cut(s)	66, 311
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	2 cut(s)	257, 280
Bsp143I	GATC	6 cut(s)	18, 286, 302, 549, 553, 570
BspACI	CCGC	3 cut(s)	153, 468, 489
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	2 cut(s)	169, 328
BspDI	ATCGAT	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	310, 557
BspTNI	GGTCTC	2 cut(s)	257, 280
BsrBI	CCGCTC	2 cut(s)	155, 468
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	211, 598
BssECI	CCNNGG	2 cut(s)	84, 326
BssMI	GATC	6 cut(s)	18, 286, 302, 549, 553, 570
Bst2UI	CCWGG	2 cut(s)	249, 519
Bst4CI	ACNGT	2 cut(s)	409, 620
BstDEI	CTNAG	2 cut(s)	156, 336
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	6 cut(s)	21, 289, 305, 552, 556, 573
BstMAI	GTCTC	3 cut(s)	52, 257, 280
BstMBI	GATC	6 cut(s)	18, 286, 302, 549, 553, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	2 cut(s)	249, 519
BstNSI	RCATGY	1 cut(s)	81
BstPAI	GACNNNNGTC	1 cut(s)	78
BstSCI	CCNGG	3 cut(s)	91, 247, 517
BstSFI	CTRYAG	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	552
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	267
BsuTUI	ATCGAT	1 cut(s)	552
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 612
CaiI	CAGNNNCTG	1 cut(s)	188
CciI	TCATGA	1 cut(s)	573
ClaI	ATCGAT	1 cut(s)	552
CviAII	CATG	2 cut(s)	78, 574
DdeI	CTNAG	2 cut(s)	156, 336
DpnI	GATC	6 cut(s)	20, 288, 304, 551, 555, 572
DpnII	GATC	6 cut(s)	18, 286, 302, 549, 553, 570
Eco31I	GGTCTC	2 cut(s)	257, 280
EcoRII	CCWGG	2 cut(s)	247, 517
FaeI	CATG	2 cut(s)	81, 577
FaiI	YATR	5 cut(s)	68, 79, 564, 566, 575
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	2 cut(s)	66, 311
FatI	CATG	2 cut(s)	77, 573
FokI	GGATG	1 cut(s)	309
GsuI	CTGGAG	3 cut(s)	194, 210, 540
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	2 cut(s)	81, 577
HinfI	GANTC	4 cut(s)	56, 360, 514, 522
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	3 cut(s)	61, 327, 337
Hpy188III	TCNNGA	6 cut(s)	16, 158, 290, 526, 557, 574
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	409, 620
HpyCH4V	TGCA	5 cut(s)	32, 70, 132, 236, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	156, 336
Hsp92II	CATG	2 cut(s)	81, 577
Kzo9I	GATC	6 cut(s)	18, 286, 302, 549, 553, 570
LmnI	GCTCC	1 cut(s)	94
LweI	GCATC	3 cut(s)	114, 330, 331
MaeIII	GTNAC	2 cut(s)	220, 610
MalI	GATC	6 cut(s)	20, 288, 304, 551, 555, 572
MbiI	CCGCTC	2 cut(s)	155, 468
MboI	GATC	6 cut(s)	18, 286, 302, 549, 553, 570
MboII	GAAGA	4 cut(s)	28, 100, 103, 427
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	2 cut(s)	369, 531
MnlI	CCTC	3 cut(s)	278, 321, 573
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	3 cut(s)	93, 249, 519
MvaI	CCWGG	2 cut(s)	249, 519
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	6 cut(s)	18, 286, 302, 549, 553, 570
NlaIII	CATG	2 cut(s)	81, 577
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	220, 610
NspI	RCATGY	1 cut(s)	81
PagI	TCATGA	1 cut(s)	573
PciI	ACATGT	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	56, 514
PfoI	TCCNGGA	2 cut(s)	91, 517
PleI	GAGTC	2 cut(s)	368, 530
PpsI	GAGTC	2 cut(s)	368, 530
PscI	ACATGT	1 cut(s)	77
PshAI	GACNNNNGTC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	247, 517
PspGI	CCWGG	2 cut(s)	247, 517
PspN4I	GGNNCC	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	302
Sau3AI	GATC	6 cut(s)	18, 286, 302, 549, 553, 570
SchI	GAGTC	2 cut(s)	369, 531
ScrFI	CCNGG	3 cut(s)	93, 249, 519
SetI	ASST	6 cut(s)	190, 253, 332, 584, 592, 630
SfaNI	GCATC	3 cut(s)	114, 330, 331
SfcI	CTRYAG	1 cut(s)	604
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	3 cut(s)	153, 468, 489
SspI	AATATT	1 cut(s)	532
StyD4I	CCNGG	3 cut(s)	91, 247, 517
TaaI	ACNGT	2 cut(s)	409, 620
TaqI	TCGA	2 cut(s)	215, 552
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	56, 514
TscAI	CASTG	2 cut(s)	238, 619
TseFI	GTSAC	2 cut(s)	220, 610
Tsp45I	GTSAC	2 cut(s)	220, 610
TspDTI	ATGAA	3 cut(s)	17, 103, 443
TspGWI	ACGGA	2 cut(s)	295, 315
TspRI	CASTG	2 cut(s)	238, 619
XceI	RCATGY	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.