Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016129

Physical Location & Seq

Genomic Coordinates Reverse (-)

13023284 .. 13023979

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G138500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAGTTCATTTTTTTCCTGCTGCATTGTCTTTCTCTCTGTCATCTGTTTTTGCACTAAAATCTGCTTTGCAGATTCTGATAATCTCCAGGACACTTGCCCTACATCCCCATCAGCAAAACAAACCATCTTCATCAATGGCTTCCCATGCAAGAACCCAAATGACAACATTGCCCCTGATTTCAAAACTTCCAAGCTGACCAAAGCTGGCAATACAGACAATTTCTTTGGCTCCTCAGTGAATATAGTGACTGCTGCAGAGTTGGCAGGCCTCAACACCCTTGGCCTCTCAATTGCAAGAACAGACCTCAGAGTGGATGGCTTGGTGGCCCTTCATTCTCACCCCAGAGCTTCTGAGCTGTTCTTTGTAAGCAAAGGCACAGTGCTTGCTGGGTTTATTGACACCCAAAACCGGGCCTTCCAGAAGATTCTTAAGGAAGGAGATGTGTTTGTGTTCCCAAGGGGCCTGCTTCACTTCTCTCTGAATGCTGGGAATGATTTTGCCACTGCTTTCTCAGTGTTTAACAGCCAAAATCCAGGAGTTGTGGGCATCTCTGGTGCCATGTTTAAGAATGATCTGGATATGATATACAAGATAACAAAGGGGTTTCTCTCTGATCACTTCAAAAATGTCACTTTTCCCGGTTCTTCAAGTCTTAACAGGCAGCAATTCAGAAACTTAAATCCTATCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

232

Amino Acids

25.15

Weight (kDa)

8.48

Isoelectric Point (pI)

21.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61750
fragaria_vesca	FvH4_5g09990
malus_domestica	MD14G1144300.v1.1
prunus_persica	Prupe.5G138500_v2.0.a1
pyrus_communis	pycom14g11990
rosa_chinensis	RchiOBHm_Chr7g0188271
rosa_laevigata	RLG00000004712
rosa_multiflora	Rmu_sc0008750.1_g000009
rosa_roxburghii	Rroxscaffold_3G00266540
rosa_rugosa	Rorug06G0489600
rosa_samantha	Rh7AG094000 Rh7BG095400 Rh7CG095800 Rh7DG096000
rosa_wichuraiana	Rw7G008100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	557
AfiI	CCNNNNNNNGG	3 cut(s)	313, 411, 412
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	184, 625, 651
AjnI	CCWGG	2 cut(s)	87, 535
AluBI	AGCT	4 cut(s)	196, 206, 350, 358
AluI	AGCT	4 cut(s)	196, 206, 350, 358
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	5 cut(s)	268, 283, 327, 414, 463
ApeKI	GCWGC	3 cut(s)	21, 254, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	3 cut(s)	328, 414, 463
AsuC2I	CCSGG	2 cut(s)	413, 642
AsuHPI	GGTGA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	557
BbvI	GCAGC	3 cut(s)	8, 241, 676
BccI	CCATC	3 cut(s)	118, 134, 311
BciT130I	CCWGG	2 cut(s)	89, 537
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	2 cut(s)	413, 642
BfmI	CTRYAG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	431
BisI	GCNGC	3 cut(s)	22, 255, 665
BlsI	GCNGC	3 cut(s)	23, 256, 666
Bme1390I	CCNGG	4 cut(s)	89, 413, 537, 642
BmgT120I	GGNCC	3 cut(s)	328, 414, 463
BmiI	GGNNCC	3 cut(s)	232, 464, 559
BmrFI	CCNGG	4 cut(s)	89, 413, 537, 642
BmsI	GCATC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	413, 642
BsaJI	CCNNGG	2 cut(s)	280, 458
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 411, 412
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	89, 537
BseDI	CCNNGG	2 cut(s)	280, 458
BseGI	GGATG	2 cut(s)	104, 322
BseLI	CCNNNNNNNGG	3 cut(s)	313, 411, 412
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	4 cut(s)	249, 322, 345, 528
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	8, 241, 676
BseYI	CCCAGC	2 cut(s)	389, 488
BshFI	GGCC	5 cut(s)	270, 285, 329, 416, 465
BshNI	GGYRCC	1 cut(s)	557
BsiSI	CCGG	2 cut(s)	412, 642
BslI	CCNNNNNNNGG	3 cut(s)	313, 411, 412
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	5 cut(s)	270, 285, 329, 416, 465
Bsp143I	GATC	2 cut(s)	574, 616
BspANI	GGCC	5 cut(s)	270, 285, 329, 416, 465
BspCNI	CTCAG	4 cut(s)	248, 321, 346, 527
BspLI	GGNNCC	3 cut(s)	232, 464, 559
BspMAI	CTGCAG	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	280, 458
BssMI	GATC	2 cut(s)	574, 616
BssT1I	CCWWGG	2 cut(s)	280, 458
Bst2UI	CCWGG	2 cut(s)	89, 537
Bst4CI	ACNGT	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	208, 268, 387, 467
BstDEI	CTNAG	4 cut(s)	235, 308, 354, 514
BstF5I	GGATG	2 cut(s)	104, 322
BstKTI	GATC	2 cut(s)	577, 619
BstMBI	GATC	2 cut(s)	574, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 263
BstNI	CCWGG	2 cut(s)	89, 537
BstSCI	CCNGG	4 cut(s)	87, 411, 535, 640
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	8, 241, 676
BsuRI	GGCC	5 cut(s)	270, 285, 329, 416, 465
BtsCI	GGATG	2 cut(s)	104, 322
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	4 cut(s)	243, 387, 504, 522
Cac8I	GCNNGC	4 cut(s)	208, 268, 387, 467
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr13I	GGNCC	3 cut(s)	328, 414, 463
CviAII	CATG	2 cut(s)	147, 562
DdeI	CTNAG	4 cut(s)	235, 308, 354, 514
DpnI	GATC	2 cut(s)	576, 618
DpnII	GATC	2 cut(s)	574, 616
Eco130I	CCWWGG	2 cut(s)	280, 458
Eco147I	AGGCCT	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	87, 535
EcoT14I	CCWWGG	2 cut(s)	280, 458
ErhI	CCWWGG	2 cut(s)	280, 458
FaeI	CATG	2 cut(s)	150, 565
FaiI	YATR	7 cut(s)	148, 245, 563, 584, 589, 692, 694
FatI	CATG	2 cut(s)	146, 561
FauNDI	CATATG	1 cut(s)	692
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	22, 255, 665
FokI	GGATG	2 cut(s)	91, 329
Fsp4HI	GCNGC	3 cut(s)	22, 255, 665
GluI	GCNGC	3 cut(s)	22, 255, 665
GsaI	CCCAGC	2 cut(s)	393, 492
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	5 cut(s)	270, 285, 329, 416, 465
HapII	CCGG	2 cut(s)	412, 642
Hin1II	CATG	2 cut(s)	150, 565
HinfI	GANTC	2 cut(s)	74, 427
HpaII	CCGG	2 cut(s)	412, 642
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	6 cut(s)	79, 311, 355, 483, 616, 674
Hpy188III	TCNNGA	2 cut(s)	421, 578
HpyAV	CCTTC	3 cut(s)	341, 427, 431
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	6 cut(s)	24, 54, 71, 150, 257, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 263
HpyF3I	CTNAG	4 cut(s)	235, 308, 354, 514
Hsp92II	CATG	2 cut(s)	150, 565
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	574, 616
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	3 cut(s)	8, 241, 676
LweI	GCATC	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	247, 631
MalI	GATC	2 cut(s)	576, 618
MboI	GATC	2 cut(s)	574, 616
MboII	GAAGA	3 cut(s)	121, 436, 639
MfeI	CAATTG	1 cut(s)	291
MluCI	AATT	3 cut(s)	220, 291, 668
MnlI	CCTC	4 cut(s)	244, 281, 296, 317
MseI	TTAA	5 cut(s)	432, 522, 567, 657, 680
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	2 cut(s)	412, 642
MspR9I	CCNGG	4 cut(s)	89, 413, 537, 642
MunI	CAATTG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	2 cut(s)	89, 537
MwoI	GCNNNNNNNGC	2 cut(s)	147, 263
NciI	CCSGG	2 cut(s)	413, 642
NdeI	CATATG	1 cut(s)	692
NdeII	GATC	2 cut(s)	574, 616
NlaIII	CATG	2 cut(s)	150, 565
NlaIV	GGNNCC	3 cut(s)	232, 464, 559
NmuCI	GTSAC	2 cut(s)	247, 631
PceI	AGGCCT	1 cut(s)	270
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	74, 427
PfoI	TCCNGGA	2 cut(s)	87, 535
PkrI	GCNGC	3 cut(s)	23, 256, 666
Psp6I	CCWGG	2 cut(s)	87, 535
PspFI	CCCAGC	2 cut(s)	389, 488
PspGI	CCWGG	2 cut(s)	87, 535
PspN4I	GGNNCC	3 cut(s)	232, 464, 559
PspPI	GGNCC	3 cut(s)	328, 414, 463
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	77
SaqAI	TTAA	5 cut(s)	432, 522, 567, 657, 680
SatI	GCNGC	3 cut(s)	22, 255, 665
Sau3AI	GATC	2 cut(s)	574, 616
Sau96I	GGNCC	3 cut(s)	328, 414, 463
ScrFI	CCNGG	4 cut(s)	89, 413, 537, 642
SetI	ASST	5 cut(s)	198, 208, 309, 352, 360
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	220, 291, 668
SseBI	AGGCCT	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	270
StyD4I	CCNGG	4 cut(s)	87, 411, 535, 640
StyI	CCWWGG	2 cut(s)	280, 458
TaaI	ACNGT	1 cut(s)	382
TasI	AATT	3 cut(s)	220, 291, 668
TfiI	GAWTC	2 cut(s)	74, 427
Tru1I	TTAA	5 cut(s)	432, 522, 567, 657, 680
Tru9I	TTAA	5 cut(s)	432, 522, 567, 657, 680
TscAI	CASTG	4 cut(s)	243, 387, 511, 522
TseFI	GTSAC	2 cut(s)	247, 631
TseI	GCWGC	3 cut(s)	21, 254, 664
Tsp45I	GTSAC	2 cut(s)	247, 631
TspDTI	ATGAA	2 cut(s)	121, 323
TspRI	CASTG	4 cut(s)	243, 387, 511, 522
Vha464I	CTTAAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.