Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016129

Physical Location & Seq

Genomic Coordinates Forward (+)

5695530 .. 5696479

Gene Structure 950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCATATTCCATCTTTTGCTTGCTGCATTGTCTTTCTATCTGTGATCTTCTGTTTCTGCACTAAAATCTCCTTATCGGATTCCGATAATCTCCAGGACACATGTCCTACCTCCCTAGGAAAACAAACCTTCTTCATCAATGGCTTCCCTTGCAAGAACCCAAACAACATCAGCGCCCCAGATTTCAAGACTTCCAAACTGACCCAACCGGGCGACATAGACAACTTCTTTGGCTCTGCAGTTACCCTTGTCACTGCCGCAGAGTTTCCAGGCCTAAACACACTTGGCCTCTCAGTTGCAAGAACTGACTTGAGAGTTGATGGTCTGGTGAGGCTTCACTCCCACCCAAGAGCTTCGGAAATGTTCTTTGTCAGCAAAGGCATTGTGCTAGTGGGGTTCATCGACACACTAAACCAGCCATTCCAGACGATTCTCAAGGAAGGAGATGTGTTCGTGTTCCCCAGGGGTCTGCTTCACTTTTGTCTGAATGCTGGTTATGACATTGCCACTGGTTTATCAGTGTTCAATAGCCAGAATCCAGGGGTGGTGAGCATTTCTGATGCCATGTTCGAGCCTAAGCCGGATGTGATAAAGAAGCTTACAGAGGGCTTTGTCACTAGTCACCTTAGAAATGCCACTTTAAGTGGATTTTCAAATAGCGGGAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

224

Amino Acids

24.15

Weight (kDa)

6.49

Isoelectric Point (pI)

25.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	66 - 194	7.7e-32	Cupin
Cupin_2	PF07883	112 - 174	5.8e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61750
fragaria_vesca	FvH4_5g09990
malus_domestica	MD14G1144300.v1.1
prunus_persica	Prupe.5G138500_v2.0.a1
pyrus_communis	pycom14g11990
rosa_chinensis	RchiOBHm_Chr7g0188271
rosa_laevigata	RLG00000004712
rosa_multiflora	Rmu_sc0008750.1_g000009
rosa_roxburghii	Rroxscaffold_3G00266540
rosa_rugosa	Rorug06G0489600
rosa_samantha	Rh7AG094000 Rh7BG095400 Rh7CG095800 Rh7DG096000
rosa_wichuraiana	Rw7G008100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	258, 660
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	187, 526, 654
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	4 cut(s)	93, 268, 461, 538
AluBI	AGCT	2 cut(s)	353, 598
AluI	AGCT	2 cut(s)	353, 598
AoxI	GGCC	2 cut(s)	271, 286
ApeKI	GCWGC	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	3 cut(s)	340, 559, 614
AvrII	CCTAGG	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	2 cut(s)	19, 314
BciT130I	CCWGG	4 cut(s)	95, 270, 463, 540
BcnI	CCSGG	1 cut(s)	210
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	3 cut(s)	116, 389, 618
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	2 cut(s)	25, 258
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	2 cut(s)	26, 259
Bme1390I	CCNGG	5 cut(s)	95, 210, 270, 463, 540
BmrFI	CCNGG	5 cut(s)	95, 210, 270, 463, 540
BmsI	GCATC	1 cut(s)	550
BoxI	GACNNNNGTC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	331, 419
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	115, 461, 462, 539
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	4 cut(s)	95, 270, 463, 540
BseDI	CCNNGG	4 cut(s)	115, 461, 462, 539
BseGI	GGATG	1 cut(s)	589
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	273, 288
BsiSI	CCGG	2 cut(s)	209, 581
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	273, 288
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	258, 660
BspANI	GGCC	2 cut(s)	273, 288
BspCNI	CTCAG	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	668
BspMAI	CTGCAG	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	4 cut(s)	115, 461, 462, 539
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	4 cut(s)	95, 270, 463, 540
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	292, 576, 626
BstF5I	GGATG	1 cut(s)	589
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	4 cut(s)	95, 270, 463, 540
BstNSI	RCATGY	1 cut(s)	105
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSCI	CCNGG	5 cut(s)	93, 208, 268, 461, 538
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	273, 288
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	252, 507, 525
Cac8I	GCNNGC	1 cut(s)	22
CciI	TCATGA	1 cut(s)	668
CfoI	GCGC	1 cut(s)	176
CviAII	CATG	3 cut(s)	102, 565, 669
DdeI	CTNAG	3 cut(s)	292, 576, 626
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	273
EcoRII	CCWGG	4 cut(s)	93, 268, 461, 538
EcoT14I	CCWWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	105, 568, 672
FaiI	YATR	6 cut(s)	6, 103, 218, 498, 566, 670
FatI	CATG	3 cut(s)	101, 564, 668
FauI	CCCGC	1 cut(s)	653
Fnu4HI	GCNGC	2 cut(s)	25, 258
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	2 cut(s)	25, 258
FspBI	CTAG	3 cut(s)	116, 389, 618
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	25, 258
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	273, 288
HapII	CCGG	2 cut(s)	209, 581
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	105, 568, 672
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	3 cut(s)	80, 430, 535
HpaII	CCGG	2 cut(s)	209, 581
HphI	GGTGA	3 cut(s)	340, 559, 614
Hpy188I	TCNGA	5 cut(s)	79, 85, 358, 486, 559
Hpy188III	TCNNGA	3 cut(s)	187, 424, 669
HpyAV	CCTTC	2 cut(s)	139, 434
HpyCH4V	TGCA	6 cut(s)	4, 27, 60, 153, 239, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	3 cut(s)	292, 576, 626
Hsp92II	CATG	3 cut(s)	105, 568, 672
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	45
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	3 cut(s)	116, 389, 618
MaeIII	GTNAC	4 cut(s)	241, 250, 613, 620
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	2 cut(s)	40, 124
MnlI	CCTC	4 cut(s)	121, 299, 324, 598
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	641
MspI	CCGG	2 cut(s)	209, 581
MspR9I	CCNGG	5 cut(s)	95, 210, 270, 463, 540
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	4 cut(s)	95, 270, 463, 540
MwoI	GCNNNNNNNGC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	3 cut(s)	105, 568, 672
NmuCI	GTSAC	3 cut(s)	250, 613, 620
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	105
PagI	TCATGA	1 cut(s)	668
PasI	CCCWGGG	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	273
PciI	ACATGT	1 cut(s)	101
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	3 cut(s)	80, 430, 535
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	26, 259
PscI	ACATGT	1 cut(s)	101
PshAI	GACNNNNGTC	1 cut(s)	102
Psp6I	CCWGG	4 cut(s)	93, 268, 461, 538
PspGI	CCWGG	4 cut(s)	93, 268, 461, 538
PstI	CTGCAG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	641
SatI	GCNGC	2 cut(s)	25, 258
Sau3AI	GATC	1 cut(s)	45
ScrFI	CCNGG	5 cut(s)	95, 210, 270, 463, 540
SetI	ASST	5 cut(s)	113, 131, 355, 600, 627
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	310, 434
SmoI	CTYRAG	2 cut(s)	310, 434
SpeI	ACTAGT	1 cut(s)	617
SseBI	AGGCCT	1 cut(s)	273
SsiI	CCGC	2 cut(s)	258, 660
SspMI	CTAG	3 cut(s)	116, 389, 618
StuI	AGGCCT	1 cut(s)	273
StyD4I	CCNGG	5 cut(s)	93, 208, 268, 461, 538
StyI	CCWWGG	1 cut(s)	115
TaqI	TCGA	2 cut(s)	402, 570
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	3 cut(s)	80, 430, 535
Tru1I	TTAA	1 cut(s)	641
Tru9I	TTAA	1 cut(s)	641
TscAI	CASTG	3 cut(s)	259, 514, 525
TseFI	GTSAC	3 cut(s)	250, 613, 620
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	3 cut(s)	250, 613, 620
TspDTI	ATGAA	2 cut(s)	124, 388
TspRI	CASTG	3 cut(s)	259, 514, 525
XceI	RCATGY	1 cut(s)	105
XmaJI	CCTAGG	1 cut(s)	115
XspI	CTAG	3 cut(s)	116, 389, 618
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.