Rmu_sc0008750.1_g000009

Germin-like protein subfamily 3 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008750.1
OG0016129
Physical Location & Seq
Forward (+)
37724 .. 39814
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008750.1_g000009.1.cds

Sequence Viewer

Length: 753 bp
atgaatagtccatcttttgcttgctactttgtctttctatcagtgatcttctgtttctgcactaaaatctccttagcggattccgataatctccaggacacatgccctacatccccgctagcaaaacaaaccatcttcatcaatggcttcccctgcaagaatccaaacgacatcagcgccccagatttcaagactacccaactgacccaaccgggcgacacagacaacttctctggctctgcagtaaccattgtcactgctgcagagtttccaggcttaaacactcttggcctctcaattgcaagaactgacttcagagttgatggtctggtgaggctccactcccacccaagagctacggaaatgttctttgtcagcaaaggcctcgtgctagtggggttcatcgacacatcaaaccagccatttgggacgtttcttaaggaaggagacgtgttcgtgttccccaggggcctgcttcacttttgtttgaatcttggctatggcagtgccactggtttatcggtgtataatagccagaatccaggggcggtgaccatgtctgatgccatgtttgagccgacgccagatgtgataaagaagcttacaaaagggctatgccttcttttcctaacggttcgtcggacttgcttccactgtagctcgttgtcctcgccggatcggaactccgatctccaaggagctgcgacatcgccagagcttcaggacttcggaaccatccatgttacgatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

250

Amino Acids

27.09

Weight (kDa)

5.66

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61750
fragaria_vesca FvH4_5g09990
malus_domestica MD14G1144300.v1.1
prunus_persica Prupe.5G138500_v2.0.a1
pyrus_communis pycom14g11990
rosa_chinensis RchiOBHm_Chr7g0188271
rosa_laevigata RLG00000004712
rosa_multiflora Rmu_sc0008750.1_g000009
rosa_roxburghii Rroxscaffold_3G00266540
rosa_rugosa Rorug06G0489600
rosa_samantha Rh7AG094000 Rh7BG095400 Rh7CG095800 Rh7DG096000
rosa_wichuraiana Rw7G008100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 116, 548
AclWI GGATC 1 cut(s) 684
AcuI CTGAAG 2 cut(s) 298, 704
AcyI GRCGYC 1 cut(s) 581
AflII CTTAAG 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 2 cut(s) 190, 490
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 4 cut(s) 93, 271, 464, 541
AluBI AGCT 5 cut(s) 356, 601, 660, 701, 718
AluI AGCT 5 cut(s) 356, 601, 660, 701, 718
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 1 cut(s) 684
AoxI GGCC 3 cut(s) 289, 382, 469
ApeKI GCWGC 2 cut(s) 260, 701
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 343, 562
AsuNHI GCTAGC 1 cut(s) 118
BauI CACGAG 1 cut(s) 386
BbvI GCAGC 2 cut(s) 247, 688
BccI CCATC 4 cut(s) 19, 140, 317, 743
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 4 cut(s) 95, 273, 466, 543
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 2 cut(s) 119, 392
BfmI CTRYAG 3 cut(s) 240, 261, 655
BfoI RGCGCY 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 437
BisI GCNGC 2 cut(s) 261, 702
BlsI GCNGC 2 cut(s) 262, 703
Bme1390I CCNGG 5 cut(s) 95, 213, 273, 466, 543
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 3 cut(s) 338, 470, 733
BmrFI CCNGG 5 cut(s) 95, 213, 273, 466, 543
BmsI GCATC 1 cut(s) 553
BmtI GCTAGC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 4 cut(s) 464, 465, 542, 694
Bse1I ACTGG 1 cut(s) 517
BseBI CCWGG 4 cut(s) 95, 273, 466, 543
BseDI CCNNGG 4 cut(s) 464, 465, 542, 694
BseGI GGATG 2 cut(s) 110, 735
BseNI ACTGG 1 cut(s) 517
BseXI GCAGC 2 cut(s) 247, 688
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 3 cut(s) 291, 384, 471
BsiSI CCGG 2 cut(s) 212, 674
BslFI GGGAC 1 cut(s) 442
BsmAI GTCTC 1 cut(s) 441
BsmBI CGTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 3 cut(s) 291, 384, 471
Bsp143I GATC 3 cut(s) 45, 676, 688
BspACI CCGC 3 cut(s) 77, 116, 548
BspANI GGCC 3 cut(s) 291, 384, 471
BspLI GGNNCC 3 cut(s) 338, 470, 733
BspMAI CTGCAG 2 cut(s) 244, 265
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 684
BspTI CTTAAG 1 cut(s) 437
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 464, 465, 542, 694
BssMI GATC 3 cut(s) 45, 676, 688
BssNI GRCGYC 1 cut(s) 581
BssSI CACGAG 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 386
Bst2UI CCWGG 4 cut(s) 95, 273, 466, 543
Bst4CI ACNGT 2 cut(s) 634, 656
BstACI GRCGYC 1 cut(s) 581
BstAFI CTTAAG 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 22, 120, 473
BstDEI CTNAG 1 cut(s) 73
BstEII GGTNACC 1 cut(s) 550
BstF5I GGATG 2 cut(s) 110, 735
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 3 cut(s) 48, 679, 691
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 3 cut(s) 45, 676, 688
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 4 cut(s) 95, 273, 466, 543
BstNSI RCATGY 1 cut(s) 105
BstPI GGTNACC 1 cut(s) 550
BstSCI CCNGG 5 cut(s) 93, 211, 271, 464, 541
BstSFI CTRYAG 3 cut(s) 240, 261, 655
BstV1I GCAGC 2 cut(s) 247, 688
BstXI CCANNNNNNTGG 1 cut(s) 425
BsuRI GGCC 3 cut(s) 291, 384, 471
BtgZI GCGATG 1 cut(s) 693
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 110, 735
BtsI GCAGTG 2 cut(s) 255, 511
BtsIMutI CAGTG 5 cut(s) 48, 255, 510, 511, 652
Cac8I GCNNGC 3 cut(s) 22, 120, 473
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 1 cut(s) 589
CviAII CATG 4 cut(s) 102, 556, 568, 740
DdeI CTNAG 1 cut(s) 73
DpnI GATC 3 cut(s) 47, 678, 690
DpnII GATC 3 cut(s) 45, 676, 688
Eco130I CCWWGG 1 cut(s) 694
Eco147I AGGCCT 1 cut(s) 384
Eco57I CTGAAG 2 cut(s) 298, 704
Eco91I GGTNACC 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 469
EcoO65I GGTNACC 1 cut(s) 550
EcoRII CCWGG 4 cut(s) 93, 271, 464, 541
EcoT14I CCWWGG 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 694
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 4 cut(s) 105, 559, 571, 743
FaiI YATR 8 cut(s) 103, 501, 528, 557, 569, 616, 741, 751
FaqI GGGAC 1 cut(s) 442
FatI CATG 4 cut(s) 101, 555, 567, 739
FauI CCCGC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 261, 702
FokI GGATG 2 cut(s) 97, 722
Fsp4HI GCNGC 2 cut(s) 261, 702
FspBI CTAG 2 cut(s) 119, 392
GlaI GCGC 1 cut(s) 178
GluI GCNGC 2 cut(s) 261, 702
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 3 cut(s) 291, 384, 471
HapII CCGG 2 cut(s) 212, 674
HgaI GACGC 1 cut(s) 589
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 4 cut(s) 105, 559, 571, 743
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 4 cut(s) 80, 160, 490, 538
HpaII CCGG 2 cut(s) 212, 674
HphI GGTGA 2 cut(s) 343, 562
Hpy188I TCNGA 7 cut(s) 85, 317, 562, 642, 681, 688, 731
Hpy188III TCNNGA 2 cut(s) 190, 722
Hpy99I CGWCG 2 cut(s) 583, 642
HpyAV CCTTC 2 cut(s) 437, 629
HpyCH4III ACNGT 2 cut(s) 634, 656
HpyCH4IV ACGT 2 cut(s) 431, 450
HpyCH4V TGCA 5 cut(s) 60, 156, 242, 263, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 2 cut(s) 431, 450
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 4 cut(s) 105, 559, 571, 743
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 3 cut(s) 45, 676, 688
LmnI GCTCC 2 cut(s) 342, 698
Lsp1109I GCAGC 2 cut(s) 247, 688
LweI GCATC 1 cut(s) 553
MaeI CTAG 2 cut(s) 119, 392
MaeII ACGT 2 cut(s) 431, 450
MaeIII GTNAC 4 cut(s) 244, 253, 550, 742
MalI GATC 3 cut(s) 47, 678, 690
MboI GATC 3 cut(s) 45, 676, 688
MboII GAAGA 2 cut(s) 40, 127
MfeI CAATTG 1 cut(s) 297
MluCI AATT 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 4 cut(s) 302, 327, 395, 679
MseI TTAA 2 cut(s) 278, 438
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 2 cut(s) 212, 674
MspR9I CCNGG 5 cut(s) 95, 213, 273, 466, 543
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 4 cut(s) 95, 273, 466, 543
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 213
NdeII GATC 3 cut(s) 45, 676, 688
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 4 cut(s) 105, 559, 571, 743
NlaIV GGNNCC 3 cut(s) 338, 470, 733
NmuCI GTSAC 2 cut(s) 253, 550
NspI RCATGY 1 cut(s) 105
PasI CCCWGGG 1 cut(s) 465
PceI AGGCCT 1 cut(s) 384
PfeI GAWTC 4 cut(s) 80, 160, 490, 538
PflFI GACNNNGTC 1 cut(s) 556
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 2 cut(s) 262, 703
Psp6I CCWGG 4 cut(s) 93, 271, 464, 541
PspEI GGTNACC 1 cut(s) 550
PspGI CCWGG 4 cut(s) 93, 271, 464, 541
PspN4I GGNNCC 3 cut(s) 338, 470, 733
PspPI GGNCC 1 cut(s) 469
PstI CTGCAG 2 cut(s) 244, 265
PsyI GACNNNGTC 1 cut(s) 556
SaqAI TTAA 2 cut(s) 278, 438
SatI GCNGC 2 cut(s) 261, 702
Sau3AI GATC 3 cut(s) 45, 676, 688
Sau96I GGNCC 1 cut(s) 469
ScrFI CCNGG 5 cut(s) 95, 213, 273, 466, 543
SetI ASST 7 cut(s) 358, 434, 453, 603, 662, 703, 720
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 3 cut(s) 240, 261, 655
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 1 cut(s) 297
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 3 cut(s) 77, 116, 548
SspMI CTAG 2 cut(s) 119, 392
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 5 cut(s) 93, 211, 271, 464, 541
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 2 cut(s) 634, 656
TaiI ACGT 2 cut(s) 434, 453
TaqI TCGA 1 cut(s) 405
TasI AATT 1 cut(s) 297
TfiI GAWTC 4 cut(s) 80, 160, 490, 538
Tru1I TTAA 2 cut(s) 278, 438
Tru9I TTAA 2 cut(s) 278, 438
TscAI CASTG 5 cut(s) 48, 262, 511, 517, 659
TseFI GTSAC 2 cut(s) 253, 550
TseI GCWGC 2 cut(s) 260, 701
Tsp45I GTSAC 2 cut(s) 253, 550
TspDTI ATGAA 3 cut(s) 17, 127, 391
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 5 cut(s) 48, 262, 511, 517, 659
Tth111I GACNNNGTC 1 cut(s) 556
Vha464I CTTAAG 1 cut(s) 437
XceI RCATGY 1 cut(s) 105
XspI CTAG 2 cut(s) 119, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.