RLG00000004712

Germin-like protein subfamily 3 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016129
Physical Location & Seq
Forward (+)
61623804 .. 61625070
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004712

Sequence Viewer

Length: 732 bp
ATGAATAGTCCATCTTTTGCTTGCAGCTTTGTCTTTCTATCAGTGATCTTCTGTTTCTGCACTAAAATCTCCTTAGCGGATTCCGATAATCTCCAGGACACATGCCCTACATCCCCCCCGCTAGCAAAACAAACCATCTTCATCAATGGCTTCCTTTGCAAGAATCCAAACGACATCAGCGCCACAGATTTCAAGACTACCCAACTGACCCAACCGGGCGACACAGACAACTTCTCTGGCTCCGCAGTAACCATTGTCACTGCTGCAGAGTTTCCAGGCTTAAACACTCTTGGCCTCTCAATTGCAAGAACTGACTTCAGAGTTGATGGTCTGGTGAGGCTCCACTCCCACCCAAGAGCTACGGAAATGTTCTTTGTCAGCAAAGGCCTCGTGCTAGCGGGGTTCATCGACACATCAAACCAGCCATTTGGGACGTTTCTTAGGGAAGGAGACGTGTTCGTATTCCCCAAGGGCCTTCTTCACTTTAGTTTGAATCTTGGCTATGGCACTGCCACTGCTTTATCGGTGTATAACAGCCAGAACCCAGGGGTGGTGACCACTTCTGATGTCATGTTTGAGCCTAAGCCGGATCTGATAAAGAAGCTTACAAAAGGTGGAAAGGAGCTTGTTCCCCTTAAGCAAGATCTCGAGTTCGAGCCTTGTGAATGGAGCAGTCAGTATTGGGAGAGCTTCCCCCCTAAATGGGGTTCGACCCAGCTCGAGAGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

244

Amino Acids

26.71

Weight (kDa)

5.09

Isoelectric Point (pI)

21.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 68 - 198 3.1e-31 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61750
fragaria_vesca FvH4_5g09990
malus_domestica MD14G1144300.v1.1
prunus_persica Prupe.5G138500_v2.0.a1
pyrus_communis pycom14g11990
rosa_chinensis RchiOBHm_Chr7g0188271
rosa_laevigata RLG00000004712
rosa_multiflora Rmu_sc0008750.1_g000009
rosa_roxburghii Rroxscaffold_3G00266540
rosa_rugosa Rorug06G0489600
rosa_samantha Rh7AG094000 Rh7BG095400 Rh7CG095800 Rh7DG096000
rosa_wichuraiana Rw7G008100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 77, 119, 243, 398
AclWI GGATC 1 cut(s) 597
AcuI CTGAAG 1 cut(s) 301
AfiI CCNNNNNNNGG 4 cut(s) 550, 702, 703, 704
AflII CTTAAG 1 cut(s) 635
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 2 cut(s) 193, 493
AjiI CACGTC 1 cut(s) 454
AjnI CCWGG 3 cut(s) 93, 274, 544
AluBI AGCT 6 cut(s) 27, 359, 604, 625, 690, 718
AluI AGCT 6 cut(s) 27, 359, 604, 625, 690, 718
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 1 cut(s) 597
Ama87I CYCGRG 2 cut(s) 647, 719
AoxI GGCC 3 cut(s) 292, 385, 472
ApeKI GCWGC 2 cut(s) 24, 263
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 472
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 346, 565
AsuNHI GCTAGC 2 cut(s) 121, 394
AvaI CYCGRG 2 cut(s) 647, 719
BauI CACGAG 1 cut(s) 389
BbvI GCAGC 2 cut(s) 36, 250
BccI CCATC 3 cut(s) 19, 143, 320
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 3 cut(s) 95, 276, 546
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 2 cut(s) 122, 395
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 635
BglII AGATCT 1 cut(s) 643
BisI GCNGC 2 cut(s) 25, 264
BlsI GCNGC 2 cut(s) 26, 265
Bme1390I CCNGG 4 cut(s) 95, 216, 276, 546
BmeT110I CYCGRG 2 cut(s) 647, 719
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 2 cut(s) 241, 341
BmrFI CCNGG 4 cut(s) 95, 216, 276, 546
BmtI GCTAGC 2 cut(s) 125, 398
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 2 cut(s) 73, 582
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 468, 544, 545
Bsc4I CCNNNNNNNGG 4 cut(s) 550, 702, 703, 704
BseBI CCWGG 3 cut(s) 95, 276, 546
BseDI CCNNGG 3 cut(s) 468, 544, 545
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 4 cut(s) 550, 702, 703, 704
BseXI GCAGC 2 cut(s) 36, 250
BseYI CCCAGC 1 cut(s) 714
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 3 cut(s) 294, 387, 474
BsiHKCI CYCGRG 2 cut(s) 647, 719
BsiSI CCGG 2 cut(s) 215, 587
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 4 cut(s) 550, 702, 703, 704
BsmAI GTCTC 1 cut(s) 444
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 3 cut(s) 294, 387, 474
BsoBI CYCGRG 2 cut(s) 647, 719
Bsp143I GATC 3 cut(s) 45, 589, 643
BspACI CCGC 4 cut(s) 77, 119, 243, 398
BspANI GGCC 3 cut(s) 294, 387, 474
BspLI GGNNCC 2 cut(s) 241, 341
BspMAI CTGCAG 1 cut(s) 268
BspOI GCTAGC 2 cut(s) 125, 398
BspPI GGATC 1 cut(s) 597
BspTI CTTAAG 1 cut(s) 635
BssECI CCNNGG 3 cut(s) 468, 544, 545
BssMI GATC 3 cut(s) 45, 589, 643
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 3 cut(s) 95, 276, 546
BstAFI CTTAAG 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 22, 123, 396
BstDEI CTNAG 3 cut(s) 73, 440, 582
BstEII GGTNACC 1 cut(s) 553
BstF5I GGATG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 3 cut(s) 48, 592, 646
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 3 cut(s) 45, 589, 643
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 3 cut(s) 95, 276, 546
BstNSI RCATGY 1 cut(s) 105
BstPI GGTNACC 1 cut(s) 553
BstSCI CCNGG 4 cut(s) 93, 214, 274, 544
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 36, 250
BstX2I RGATCY 2 cut(s) 589, 643
BstXI CCANNNNNNTGG 1 cut(s) 428
BstYI RGATCY 2 cut(s) 589, 643
BsuRI GGCC 3 cut(s) 294, 387, 474
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 110
BtsI GCAGTG 3 cut(s) 258, 507, 513
BtsIMutI CAGTG 4 cut(s) 48, 258, 507, 513
Cac8I GCNNGC 3 cut(s) 22, 123, 396
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 472
CviAII CATG 2 cut(s) 102, 571
DdeI CTNAG 3 cut(s) 73, 440, 582
DpnI GATC 3 cut(s) 47, 591, 645
DpnII GATC 3 cut(s) 45, 589, 643
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 301
Eco88I CYCGRG 2 cut(s) 647, 719
Eco91I GGTNACC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 472
EcoO65I GGTNACC 1 cut(s) 553
EcoRII CCWGG 3 cut(s) 93, 274, 544
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 2 cut(s) 105, 574
FaiI YATR 4 cut(s) 103, 504, 531, 572
FaqI GGGAC 1 cut(s) 445
FatI CATG 2 cut(s) 101, 570
FauI CCCGC 2 cut(s) 126, 391
Fnu4HI GCNGC 2 cut(s) 25, 264
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 2 cut(s) 25, 264
FspBI CTAG 2 cut(s) 122, 395
GlaI GCGC 1 cut(s) 181
GluI GCNGC 2 cut(s) 25, 264
GsaI CCCAGC 1 cut(s) 718
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 3 cut(s) 294, 387, 474
HapII CCGG 2 cut(s) 215, 587
HhaI GCGC 1 cut(s) 182
Hin1II CATG 2 cut(s) 105, 574
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 3 cut(s) 80, 163, 493
HpaII CCGG 2 cut(s) 215, 587
HphI GGTGA 2 cut(s) 346, 565
Hpy188I TCNGA 4 cut(s) 85, 320, 565, 594
Hpy188III TCNNGA 3 cut(s) 193, 647, 721
HpyAV CCTTC 2 cut(s) 440, 485
HpyCH4IV ACGT 2 cut(s) 434, 453
HpyCH4V TGCA 5 cut(s) 24, 60, 159, 266, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 3 cut(s) 73, 440, 582
HpySE526I ACGT 2 cut(s) 434, 453
Hsp92II CATG 2 cut(s) 105, 574
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 3 cut(s) 45, 589, 643
LmnI GCTCC 4 cut(s) 245, 345, 622, 669
Lsp1109I GCAGC 2 cut(s) 36, 250
MaeI CTAG 2 cut(s) 122, 395
MaeII ACGT 2 cut(s) 434, 453
MaeIII GTNAC 3 cut(s) 247, 256, 553
MalI GATC 3 cut(s) 47, 591, 645
MboI GATC 3 cut(s) 45, 589, 643
MboII GAAGA 3 cut(s) 40, 130, 470
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 2 cut(s) 589, 643
MluCI AATT 1 cut(s) 300
MnlI CCTC 4 cut(s) 305, 330, 398, 717
MseI TTAA 2 cut(s) 281, 636
MspCI CTTAAG 1 cut(s) 635
MspI CCGG 2 cut(s) 215, 587
MspR9I CCNGG 4 cut(s) 95, 216, 276, 546
MunI CAATTG 1 cut(s) 300
MvaI CCWGG 3 cut(s) 95, 276, 546
MwoI GCNNNNNNNGC 1 cut(s) 156
NciI CCSGG 1 cut(s) 216
NdeII GATC 3 cut(s) 45, 589, 643
NheI GCTAGC 2 cut(s) 121, 394
NlaIII CATG 2 cut(s) 105, 574
NlaIV GGNNCC 2 cut(s) 241, 341
NmuCI GTSAC 2 cut(s) 256, 553
NspI RCATGY 1 cut(s) 105
PaeR7I CTCGAG 2 cut(s) 647, 719
PasI CCCWGGG 1 cut(s) 545
PceI AGGCCT 1 cut(s) 387
PfeI GAWTC 3 cut(s) 80, 163, 493
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 2 cut(s) 26, 265
Psp6I CCWGG 3 cut(s) 93, 274, 544
PspEI GGTNACC 1 cut(s) 553
PspFI CCCAGC 1 cut(s) 714
PspGI CCWGG 3 cut(s) 93, 274, 544
PspN4I GGNNCC 2 cut(s) 241, 341
PspPI GGNCC 1 cut(s) 472
PstI CTGCAG 1 cut(s) 268
PsuI RGATCY 2 cut(s) 589, 643
SaqAI TTAA 2 cut(s) 281, 636
SatI GCNGC 2 cut(s) 25, 264
Sau3AI GATC 3 cut(s) 45, 589, 643
Sau96I GGNCC 1 cut(s) 472
ScrFI CCNGG 4 cut(s) 95, 216, 276, 546
SetI ASST 9 cut(s) 29, 361, 437, 456, 606, 616, 627, 692, 720
SfcI CTRYAG 1 cut(s) 264
Sfr274I CTCGAG 2 cut(s) 647, 719
SlaI CTCGAG 2 cut(s) 647, 719
SmlI CTYRAG 3 cut(s) 635, 647, 719
SmoI CTYRAG 3 cut(s) 635, 647, 719
Sse9I AATT 1 cut(s) 300
SseBI AGGCCT 1 cut(s) 387
SsiI CCGC 4 cut(s) 77, 119, 243, 398
SspMI CTAG 2 cut(s) 122, 395
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 4 cut(s) 93, 214, 274, 544
StyI CCWWGG 1 cut(s) 468
TaiI ACGT 2 cut(s) 437, 456
TaqI TCGA 5 cut(s) 408, 648, 654, 710, 720
TasI AATT 1 cut(s) 300
TfiI GAWTC 3 cut(s) 80, 163, 493
Tru1I TTAA 2 cut(s) 281, 636
Tru9I TTAA 2 cut(s) 281, 636
TscAI CASTG 4 cut(s) 48, 265, 514, 520
TseFI GTSAC 2 cut(s) 256, 553
TseI GCWGC 2 cut(s) 24, 263
Tsp45I GTSAC 2 cut(s) 256, 553
TspDTI ATGAA 3 cut(s) 17, 130, 394
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 4 cut(s) 48, 265, 514, 520
Vha464I CTTAAG 1 cut(s) 635
XceI RCATGY 1 cut(s) 105
XhoI CTCGAG 2 cut(s) 647, 719
XspI CTAG 2 cut(s) 122, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.