AT5G62140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015498
Physical Location & Seq
Reverse (-)
24954216 .. 24955503
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62140.1

Sequence Viewer

Length: 726 bp
ATGGCTTCAACAAAAATAAACTCTTTAACAACAACAATCTACAATTACAAATCCCCAAGAAGATACATTAACCACAAATCCCAAAACCAAATCAAACTAATTTCAAATTCCCTAAACCCAAAACCCAACACAACACAGCTTCCCAACACTCTCTACAGTGTCAGCTTCAAGACTATTGGAACAGGTAAGCTTGGCATCTCCAGATATCCCGATTTCGAATACTCTCCTCTAGGTGGCTCTGGTGCCGGAACCGCCAAGAAAATCGACGACAAAAACAGAGCATCAAACTCTGAATTGTCTGTTTGTTTCAATGTGGCCACTCTTTATATTCCTTCTCTCACTAGCCAAACCACGAAGTTTCTCGGCTTTCCATTGCCACCGTTTCTAAAAATCGATATCTCACCGGAGATTTTCCAAGGAACTATCAACCAAGAATCCGGGAAGGTGGAATTGGAGTTTATGGCGAAGTTCTTTTTCACGGCGGGAGGAGGGATATACAGAGCTCCGGCGTTGGTGGTGAGAACTGTGTTGACGACGGAGGAATCGATAGGAGAGAACAAGAGAGGGAAAGGAGAGAGACTGGACGAAGAAGGAAAGTGTAGACTCGTCGGCGTCGCGAAAGTTGAGACCATCGACGATTTGTTTATGAACACGTTCCTCTCTCTTCCGGCGGAGTGTCTCGCCGATCTACAAGCTATTATTTCAGTCTCTGATAATCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.44

Weight (kDa)

8.86

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62140
fragaria_vesca FvH4_7g28911 FvH4_7g28911
malus_domestica MD01G1195800.v1.1
prunus_persica Prupe.2G289100_v2.0.a1
pyrus_communis pycom01g20640 pycom07g24160
rosa_chinensis RchiOBHm_Chr1g0376581
rosa_laevigata RLG00000026596
rosa_roxburghii Rroxscaffold_4G00281970
rosa_rugosa Rorug01G0396500
rosa_samantha Rh1AG412100 Rh1BG372800 Rh1CG386700 Rh1DG403700
rosa_wichuraiana Rw1G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 601
AccII CGCG 1 cut(s) 617
AciI CCGC 3 cut(s) 252, 482, 671
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 612
AfiI CCNNNNNNNGG 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 4 cut(s) 9, 105, 169, 310
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 5 cut(s) 139, 165, 190, 503, 695
AluI AGCT 5 cut(s) 139, 165, 190, 503, 695
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 4 cut(s) 571, 620, 683, 712
AlwNI CAGNNNCTG 1 cut(s) 710
AoxI GGCC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 653
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 393, 529
AsuII TTCGAA 1 cut(s) 216
BalI TGGCCA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 505
BccI CCATC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 495
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 4 cut(s) 571, 620, 683, 712
BfaI CTAG 2 cut(s) 230, 342
BfmI CTRYAG 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 439
BmiI GGNNCC 2 cut(s) 244, 250
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 204, 290
BpmI CTGGAG 1 cut(s) 184
Bpu14I TTCGAA 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 439
Bsa29I ATCGAT 2 cut(s) 393, 545
BsaHI GRCGYC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 1 cut(s) 415
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 371
BseCI ATCGAT 2 cut(s) 393, 545
BseDI CCNNGG 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 2 cut(s) 216, 501
Bsh1236I CGCG 1 cut(s) 617
BshFI GGCC 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 242
BshVI ATCGAT 2 cut(s) 393, 545
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 5 cut(s) 246, 404, 438, 506, 668
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 4 cut(s) 571, 620, 683, 712
BsnI GGCC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 620
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 1 cut(s) 685
Bsp68I TCGCGA 1 cut(s) 617
BspACI CCGC 3 cut(s) 252, 482, 671
BspANI GGCC 1 cut(s) 317
BspDI ATCGAT 2 cut(s) 393, 545
BspFNI CGCG 1 cut(s) 617
BspLI GGNNCC 2 cut(s) 244, 250
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 620
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 1 cut(s) 685
BssNI GRCGYC 1 cut(s) 612
BssT1I CCWWGG 1 cut(s) 415
Bst4CI ACNGT 3 cut(s) 158, 381, 526
Bst6I CTCTTC 1 cut(s) 669
BstACI GRCGYC 1 cut(s) 612
BstBI TTCGAA 1 cut(s) 216
BstFNI CGCG 1 cut(s) 617
BstKTI GATC 1 cut(s) 688
BstMAI GTCTC 4 cut(s) 571, 620, 683, 712
BstMBI GATC 1 cut(s) 685
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 154
BstUI CGCG 1 cut(s) 617
Bsu15I ATCGAT 2 cut(s) 393, 545
BsuRI GGCC 1 cut(s) 317
BsuTUI ATCGAT 2 cut(s) 393, 545
BtsIMutI CAGTG 1 cut(s) 163
BtuMI TCGCGA 1 cut(s) 617
CaiI CAGNNNCTG 1 cut(s) 710
ClaI ATCGAT 2 cut(s) 393, 545
CseI GACGC 1 cut(s) 601
DpnI GATC 1 cut(s) 687
DpnII GATC 1 cut(s) 685
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
EciI GGCGGA 1 cut(s) 686
Ecl136II GAGCTC 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 620
Eco32I GATATC 2 cut(s) 206, 397
Eco53kI GAGCTC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 503
EcoRV GATATC 2 cut(s) 206, 397
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 415
FaiI YATR 4 cut(s) 327, 461, 496, 647
FauI CCCGC 1 cut(s) 475
FblI GTMKAC 1 cut(s) 601
FriOI GRGCYC 1 cut(s) 505
FspBI CTAG 2 cut(s) 230, 342
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 1 cut(s) 317
HapII CCGG 5 cut(s) 246, 404, 438, 506, 668
HgaI GACGC 1 cut(s) 601
Hin1I GRCGYC 1 cut(s) 612
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 3 cut(s) 434, 542, 603
HpaII CCGG 5 cut(s) 246, 404, 438, 506, 668
HphI GGTGA 2 cut(s) 393, 529
Hpy166II GTNNAC 2 cut(s) 531, 602
Hpy188I TCNGA 2 cut(s) 292, 712
Hpy188III TCNNGA 5 cut(s) 169, 201, 209, 616, 723
Hpy8I GTNNAC 2 cut(s) 531, 602
Hpy99I CGWCG 5 cut(s) 269, 538, 611, 617, 638
HpyAV CCTTC 3 cut(s) 342, 436, 584
HpyCH4III ACNGT 3 cut(s) 158, 381, 526
HpyCH4IV ACGT 1 cut(s) 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 653
Hsp92I GRCGYC 1 cut(s) 612
Kzo9I GATC 1 cut(s) 685
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 9 cut(s) 168, 214, 225, 259, 417, 451, 519, 566, 681
LweI GCATC 2 cut(s) 204, 290
MaeI CTAG 2 cut(s) 230, 342
MaeII ACGT 1 cut(s) 653
MalI GATC 1 cut(s) 687
MboI GATC 1 cut(s) 685
MboII GAAGA 3 cut(s) 72, 599, 656
MhlI GDGCHC 1 cut(s) 505
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 5 cut(s) 43, 99, 106, 293, 449
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 597
MnlI CCTC 6 cut(s) 237, 479, 482, 532, 557, 668
Mox20I TGGCCA 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 653
MscI TGGCCA 1 cut(s) 317
MseI TTAA 2 cut(s) 26, 69
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 5 cut(s) 246, 404, 438, 506, 668
MspR9I CCNGG 1 cut(s) 439
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 439
NdeII GATC 1 cut(s) 685
NlaIV GGNNCC 2 cut(s) 244, 250
NmeAIII GCCGAG 1 cut(s) 342
NruI TCGCGA 1 cut(s) 617
NspV TTCGAA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 2 cut(s) 434, 542
PfoI TCCNGGA 1 cut(s) 437
PleI GAGTC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 244, 250
PstNI CAGNNNCTG 1 cut(s) 710
RruI TCGCGA 1 cut(s) 617
SacI GAGCTC 1 cut(s) 505
SaqAI TTAA 2 cut(s) 26, 69
Sau3AI GATC 1 cut(s) 685
SchI GAGTC 1 cut(s) 597
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 505
SetI ASST 9 cut(s) 141, 167, 187, 192, 235, 447, 505, 656, 697
SfaNI GCATC 2 cut(s) 204, 290
SfcI CTRYAG 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 216
Sse9I AATT 5 cut(s) 43, 99, 106, 293, 449
SsiI CCGC 3 cut(s) 252, 482, 671
SspMI CTAG 2 cut(s) 230, 342
SstI GAGCTC 1 cut(s) 505
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 3 cut(s) 158, 381, 526
TaiI ACGT 1 cut(s) 656
TaqI TCGA 5 cut(s) 216, 264, 393, 545, 633
TasI AATT 5 cut(s) 43, 99, 106, 293, 449
TfiI GAWTC 2 cut(s) 434, 542
Tru1I TTAA 2 cut(s) 26, 69
Tru9I TTAA 2 cut(s) 26, 69
TscAI CASTG 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 662
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 1 cut(s) 163
XapI RAATTY 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 2 cut(s) 230, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.