Prupe.2G289100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015498
Physical Location & Seq
Forward (+)
28378111 .. 28379509
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G289100.1

Sequence Viewer

Length: 729 bp
ATGGGGTGCAGGATAAACAACTCAAATCCTCCTCCAGTTCTTTGGAAATTCTCAACACAAAGGCAAAGGCCTATAACAAAAACCATCTCCTTCTCTTCCCCTTCCAACAGTCAAAACCAACAAGAACTTGCTCCCATCACTGCAGCCACTCAAACCCAACACCCAAAATCGAAACTTTATACTGTTAAGTTCAGGACTTTGAGTGCCTGCAAGCTTGGCATATCCATATATCCAGACTTTGAATACAATGCTGAAGGTGGGAAGGGAACTGGGTCTGGTGCCAAGGTCGCAGAAAGCAACTTGAGCGATGAAGTTTCGGTGTCATTTGATCTTGAAACACTCTACATCCCACCATTGAAGAGTGCAACAACAAGGTTCTTGGGACTGCCATTGCCACCATTTTTAAAGATTGACATTGTCCCCGAGCTCTTCAGTGGGAGCATCAATCAAGAATCTGGCCAGGTTGATCTTGAATTCGAGGCAAAGTTCTGGTTTTCTGTAGGGAGTATCTATAAGGCGGCTCCGCTGCTGGTGAAAACGGTCTTGACATCTGAAGAATCAAAAGGATCAATAAAAAGTGGAAAAGGCAAGAGGTTGGATGAACAAGGAAAGTGCAGATTGGTTGGGGTGGCAACTGTTGATCCTATTGATGACTTTCTGATTAACTCCTTCCTTGGCCTACCCACTGAATGCCTTGCCGACCTCAATGCTATCATTTCCTTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.29

Weight (kDa)

7.59

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62140
fragaria_vesca FvH4_7g28911 FvH4_7g28911
malus_domestica MD01G1195800.v1.1
prunus_persica Prupe.2G289100_v2.0.a1
pyrus_communis pycom01g20640 pycom07g24160
rosa_chinensis RchiOBHm_Chr1g0376581
rosa_laevigata RLG00000026596
rosa_roxburghii Rroxscaffold_4G00281970
rosa_rugosa Rorug01G0396500
rosa_samantha Rh1AG412100 Rh1BG372800 Rh1CG386700 Rh1DG403700
rosa_wichuraiana Rw1G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 2 cut(s) 518, 524
AclWI GGATC 2 cut(s) 574, 635
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 2 cut(s) 47, 473
AcuI CTGAAG 3 cut(s) 273, 415, 573
AgsI TTSAA 4 cut(s) 242, 335, 358, 473
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 2 cut(s) 214, 427
AluI AGCT 2 cut(s) 214, 427
Alw21I GWGCWC 1 cut(s) 429
AlwI GGATC 2 cut(s) 574, 635
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 3 cut(s) 68, 457, 676
ApeKI GCWGC 2 cut(s) 143, 526
ApoI RAATTY 2 cut(s) 47, 473
AsuHPI GGTGA 1 cut(s) 544
AvaI CYCGRG 1 cut(s) 422
BalI TGGCCA 1 cut(s) 459
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 2 cut(s) 155, 513
BccI CCATC 2 cut(s) 92, 143
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 1 cut(s) 461
BfmI CTRYAG 2 cut(s) 141, 498
BisI GCNGC 3 cut(s) 144, 519, 527
BlsI GCNGC 3 cut(s) 145, 520, 528
Bme1390I CCNGG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 422
BmiI GGNNCC 2 cut(s) 280, 522
BmrFI CCNGG 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 282, 673
Bse1I ACTGG 2 cut(s) 35, 274
Bse3DI GCAATG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 282, 673
BseGI GGATG 2 cut(s) 345, 604
BseMI GCAATG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 35, 274
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 155, 513
BsgI GTGCAG 2 cut(s) 28, 634
BshFI GGCC 3 cut(s) 70, 459, 678
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 429
BsiHKCI CYCGRG 1 cut(s) 422
BslFI GGGAC 2 cut(s) 396, 404
BsmFI GGGAC 2 cut(s) 396, 404
BsmI GAATGC 1 cut(s) 695
BsnI GGCC 3 cut(s) 70, 459, 678
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 4 cut(s) 328, 466, 566, 640
BspACI CCGC 2 cut(s) 518, 524
BspANI GGCC 3 cut(s) 70, 459, 678
BspLI GGNNCC 2 cut(s) 280, 522
BspMAI CTGCAG 1 cut(s) 145
BspPI GGATC 2 cut(s) 574, 635
BspQI GCTCTTC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 389
BsrI ACTGG 2 cut(s) 35, 274
BssECI CCNNGG 2 cut(s) 282, 673
BssMI GATC 4 cut(s) 328, 466, 566, 640
BssT1I CCWWGG 2 cut(s) 282, 673
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 4 cut(s) 110, 184, 541, 637
Bst6I CTCTTC 3 cut(s) 100, 353, 434
BstC8I GCNNGC 2 cut(s) 208, 212
BstDEI CTNAG 1 cut(s) 726
BstF5I GGATG 2 cut(s) 345, 604
BstKTI GATC 4 cut(s) 331, 469, 569, 643
BstMBI GATC 4 cut(s) 328, 466, 566, 640
BstMWI GCNNNNNNNGC 3 cut(s) 216, 287, 303
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstSFI CTRYAG 2 cut(s) 141, 498
BstV1I GCAGC 2 cut(s) 155, 513
BstXI CCANNNNNNTGG 1 cut(s) 42
BsuRI GGCC 3 cut(s) 70, 459, 678
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 345, 604
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 138, 439, 684
Cac8I GCNNGC 2 cut(s) 208, 212
CviJI RGCY 7 cut(s) 70, 146, 214, 427, 459, 521, 678
CviKI_1 RGCY 7 cut(s) 70, 146, 214, 427, 459, 521, 678
DdeI CTNAG 1 cut(s) 726
DpnI GATC 4 cut(s) 330, 468, 568, 642
DpnII GATC 4 cut(s) 328, 466, 566, 640
DraI TTTAAA 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 3 cut(s) 100, 353, 434
EarI CTCTTC 3 cut(s) 100, 353, 434
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 282, 673
Eco147I AGGCCT 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 3 cut(s) 273, 415, 573
Eco88I CYCGRG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 2 cut(s) 282, 673
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 2 cut(s) 282, 673
FaiI YATR 6 cut(s) 74, 180, 221, 227, 229, 513
FaqI GGGAC 2 cut(s) 396, 404
Fnu4HI GCNGC 3 cut(s) 144, 519, 527
FokI GGATG 2 cut(s) 332, 611
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 3 cut(s) 144, 519, 527
GluI GCNGC 3 cut(s) 144, 519, 527
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 3 cut(s) 70, 459, 678
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 2 cut(s) 452, 557
HphI GGTGA 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 553, 660
Hpy188III TCNNGA 6 cut(s) 193, 233, 332, 449, 470, 544
HpyAV CCTTC 5 cut(s) 100, 111, 248, 256, 679
HpyCH4III ACNGT 4 cut(s) 110, 184, 541, 637
HpyCH4V TGCA 5 cut(s) 9, 143, 210, 365, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 287, 303
HpyF3I CTNAG 1 cut(s) 726
Kzo9I GATC 4 cut(s) 328, 466, 566, 640
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 3 cut(s) 136, 438, 526
Lsp1109I GCAGC 2 cut(s) 155, 513
LweI GCATC 1 cut(s) 450
MalI GATC 4 cut(s) 330, 468, 568, 642
MboI GATC 4 cut(s) 328, 466, 566, 640
MboII GAAGA 4 cut(s) 87, 370, 421, 566
MhlI GDGCHC 1 cut(s) 429
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 2 cut(s) 47, 473
MluNI TGGCCA 1 cut(s) 459
MmeI TCCRAC 2 cut(s) 129, 576
MnlI CCTC 5 cut(s) 39, 42, 472, 585, 713
Mox20I TGGCCA 1 cut(s) 459
MscI TGGCCA 1 cut(s) 459
MseI TTAA 3 cut(s) 186, 404, 663
Msp20I TGGCCA 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 526
MspR9I CCNGG 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 695
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 3 cut(s) 216, 287, 303
NdeII GATC 4 cut(s) 328, 466, 566, 640
NlaIV GGNNCC 2 cut(s) 280, 522
PceI AGGCCT 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 434
PctI GAATGC 1 cut(s) 695
PfeI GAWTC 2 cut(s) 452, 557
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 145, 520, 528
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 280, 522
PstI CTGCAG 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 416
SacI GAGCTC 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 434
SaqAI TTAA 3 cut(s) 186, 404, 663
SatI GCNGC 3 cut(s) 144, 519, 527
Sau3AI GATC 4 cut(s) 328, 466, 566, 640
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 429
SetI ASST 8 cut(s) 216, 259, 288, 377, 429, 465, 596, 705
SfaNI GCATC 1 cut(s) 450
SfcI CTRYAG 2 cut(s) 141, 498
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 2 cut(s) 47, 473
SseBI AGGCCT 1 cut(s) 70
SsiI CCGC 2 cut(s) 518, 524
SstI GAGCTC 1 cut(s) 429
StuI AGGCCT 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 2 cut(s) 282, 673
TaaI ACNGT 4 cut(s) 110, 184, 541, 637
TaqI TCGA 2 cut(s) 170, 477
TasI AATT 2 cut(s) 47, 473
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 2 cut(s) 452, 557
Tru1I TTAA 3 cut(s) 186, 404, 663
Tru9I TTAA 3 cut(s) 186, 404, 663
TscAI CASTG 3 cut(s) 145, 439, 691
TseI GCWGC 2 cut(s) 143, 526
TspDTI ATGAA 2 cut(s) 324, 615
TspRI CASTG 3 cut(s) 145, 439, 691
Tth111I GACNNNGTC 1 cut(s) 416
XapI RAATTY 2 cut(s) 47, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.