FvH4_7g28911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015498
Physical Location & Seq
Forward (+)
21351878 .. 21353799
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28911.t1

Sequence Viewer

Length: 693 bp
ATGGGTAGCAAGATCAACAACTCAAACCCTCCAATTCTTTGGAAAATCCCGACTAAGCAGCAGAGGCCTAAAACAAAAACCATATCCTTCTCTTCCGCCACCACCGACTCTCAAACCTCGTATCAAAACTCTAAGCTTTACGCTGTCAAGTTCAAGACCTTGAGCGCCTGCAAGCTTGGCATAGCTAGATATCCTGATTTCGAATACGATGCTGAAGGTGGCACCGGAACCGGGTCTGGTACAACAGAAAGCGGCAACTCAAGTGGTGAAGTTTCAGTGTCATTTGACATTAACACACTCTACATACCACCATTGCAGACTTCAACAACAAAGTTTCTTGGACTGCCATTGCCACCGTTTTTGAAGATTGACATTGTCCCGGAGCTTTTTCGTGGCAGAATCGATCAAGAATCCGGCAAGGTTGATCTTGAGTTCAAAGCCAAGTTCTGGTTTTCGGTTGGGAGCATCTATAGAGCTCCTCCACTTGTGGTGGAGACGGTTTTAACATCTGAGGAATCAAGAGGAACAATGAGAAGTGGAAAAGGGGAGAGGTTGGATGAACAAGGAAACTGCAAATTGGTTGGAGTGGCAACTGTTGAACCTATTGATGACCCTTTCATGAACACCTTCCTTGGCCTCCCTACTGAATGCCTTGCAGGCATGAATGCTGTTATCTCTTTGTCTACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

24.98

Weight (kDa)

6.39

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62140
fragaria_vesca FvH4_7g28911 FvH4_7g28911
malus_domestica MD01G1195800.v1.1
prunus_persica Prupe.2G289100_v2.0.a1
pyrus_communis pycom01g20640 pycom07g24160
rosa_chinensis RchiOBHm_Chr1g0376581
rosa_laevigata RLG00000026596
rosa_roxburghii Rroxscaffold_4G00281970
rosa_rugosa Rorug01G0396500
rosa_samantha Rh1AG412100 Rh1BG372800 Rh1CG386700 Rh1DG403700
rosa_wichuraiana Rw1G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 447
AccI GTMKAC 1 cut(s) 683
AciI CCGC 2 cut(s) 96, 252
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 231, 447
AgsI TTSAA 5 cut(s) 154, 324, 364, 436, 599
AluBI AGCT 5 cut(s) 136, 175, 185, 385, 476
AluI AGCT 5 cut(s) 136, 175, 185, 385, 476
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 488
AoxI GGCC 2 cut(s) 65, 634
ApeKI GCWGC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 626
AspLEI GCGC 1 cut(s) 167
AsuC2I CCSGG 2 cut(s) 232, 380
AsuHPI GGTGA 1 cut(s) 278
AsuII TTCGAA 1 cut(s) 201
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BcnI CCSGG 2 cut(s) 232, 380
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 469
BfoI RGCGCY 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 657
BisI GCNGC 2 cut(s) 59, 253
BlsI GCNGC 2 cut(s) 60, 254
Bme1390I CCNGG 2 cut(s) 232, 380
BmiI GGNNCC 2 cut(s) 223, 229
BmrFI CCNGG 2 cut(s) 232, 380
BmsI GCATC 2 cut(s) 199, 474
Bpu14I TTCGAA 1 cut(s) 201
BpuEI CTTGAG 3 cut(s) 181, 244, 449
BpuMI CCSGG 2 cut(s) 232, 380
Bsa29I ATCGAT 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 631
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 447
Bse3DI GCAATG 2 cut(s) 311, 347
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 631
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 2 cut(s) 231, 447
BseMI GCAATG 2 cut(s) 311, 347
BseMII CTCAG 1 cut(s) 501
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 2 cut(s) 67, 636
BshNI GGYRCC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 4 cut(s) 225, 231, 380, 414
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 231, 447
BsmAI GTCTC 1 cut(s) 488
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 2 cut(s) 653, 670
BsnI GGCC 2 cut(s) 67, 636
Bsp119I TTCGAA 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 3 cut(s) 12, 403, 424
BspACI CCGC 2 cut(s) 96, 252
BspANI GGCC 2 cut(s) 67, 636
BspCNI CTCAG 1 cut(s) 502
BspDI ATCGAT 1 cut(s) 402
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 223, 229
BspT104I TTCGAA 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 311, 347
BssECI CCNNGG 1 cut(s) 631
BssMI GATC 3 cut(s) 12, 403, 424
BssT1I CCWWGG 1 cut(s) 631
Bst4CI ACNGT 3 cut(s) 357, 499, 595
Bst6I CTCTTC 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 201
BstC8I GCNNGC 3 cut(s) 169, 173, 658
BstDEI CTNAG 4 cut(s) 54, 132, 510, 690
BstF5I GGATG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 3 cut(s) 15, 406, 427
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 3 cut(s) 12, 403, 424
BstMWI GCNNNNNNNGC 3 cut(s) 64, 177, 657
BstSCI CCNGG 2 cut(s) 230, 378
BstSFI CTRYAG 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 2 cut(s) 67, 636
BsuTUI ATCGAT 1 cut(s) 402
BtsCI GGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 3 cut(s) 169, 173, 658
CciI TCATGA 1 cut(s) 618
CfoI GCGC 1 cut(s) 167
ClaI ATCGAT 1 cut(s) 402
Csp6I GTAC 1 cut(s) 240
CspCI CAANNNNNGTGG 4 cut(s) 244, 279, 342, 377
CviAII CATG 2 cut(s) 619, 661
CviJI RGCY 8 cut(s) 67, 136, 175, 185, 385, 440, 476, 636
CviKI_1 RGCY 8 cut(s) 67, 136, 175, 185, 385, 440, 476, 636
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 4 cut(s) 54, 132, 510, 690
DpnI GATC 3 cut(s) 14, 405, 426
DpnII GATC 3 cut(s) 12, 403, 424
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 476
Eco130I CCWWGG 1 cut(s) 631
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 476
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 631
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 2 cut(s) 622, 664
FaiI YATR 6 cut(s) 83, 182, 305, 471, 620, 662
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 618, 660
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 2 cut(s) 59, 253
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 2 cut(s) 59, 253
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 59, 253
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 2 cut(s) 67, 636
HapII CCGG 4 cut(s) 225, 231, 380, 414
HhaI GCGC 1 cut(s) 167
Hin1II CATG 2 cut(s) 622, 664
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HindIII AAGCTT 2 cut(s) 134, 173
HinfI GANTC 4 cut(s) 107, 399, 410, 515
HpaII CCGG 4 cut(s) 225, 231, 380, 414
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 684
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 7 cut(s) 49, 154, 194, 407, 428, 519, 619
Hpy8I GTNNAC 1 cut(s) 684
HpyAV CCTTC 3 cut(s) 97, 209, 637
HpyCH4III ACNGT 3 cut(s) 357, 499, 595
HpyCH4V TGCA 4 cut(s) 171, 316, 573, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 177, 657
HpyF3I CTNAG 4 cut(s) 54, 132, 510, 690
Hsp92II CATG 2 cut(s) 622, 664
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 3 cut(s) 12, 403, 424
LmnI GCTCC 3 cut(s) 382, 462, 481
LpnPI CCDG 9 cut(s) 181, 207, 222, 238, 244, 393, 427, 433, 642
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 199, 474
MaeI CTAG 1 cut(s) 186
MalI GATC 3 cut(s) 14, 405, 426
MboI GATC 3 cut(s) 12, 403, 424
MboII GAAGA 2 cut(s) 84, 376
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 2 cut(s) 33, 575
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 534, 562
MnlI CCTC 8 cut(s) 39, 57, 127, 489, 505, 515, 543, 647
MroXI GAANNNNTTC 1 cut(s) 626
MseI TTAA 2 cut(s) 291, 503
MspI CCGG 4 cut(s) 225, 231, 380, 414
MspR9I CCNGG 2 cut(s) 232, 380
Mva1269I GAATGC 2 cut(s) 653, 670
MwoI GCNNNNNNNGC 3 cut(s) 64, 177, 657
NciI CCSGG 2 cut(s) 232, 380
NdeII GATC 3 cut(s) 12, 403, 424
NlaIII CATG 2 cut(s) 622, 664
NlaIV GGNNCC 2 cut(s) 223, 229
NspV TTCGAA 1 cut(s) 201
PagI TCATGA 1 cut(s) 618
PceI AGGCCT 1 cut(s) 67
PctI GAATGC 2 cut(s) 653, 670
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 3 cut(s) 399, 410, 515
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 2 cut(s) 60, 254
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 223, 229
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SacI GAGCTC 1 cut(s) 478
SaqAI TTAA 2 cut(s) 291, 503
SatI GCNGC 2 cut(s) 59, 253
Sau3AI GATC 3 cut(s) 12, 403, 424
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 232, 380
SduI GDGCHC 1 cut(s) 478
SfaNI GCATC 2 cut(s) 199, 474
SfcI CTRYAG 1 cut(s) 469
SfuI TTCGAA 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 160, 259, 428
SmoI CTYRAG 3 cut(s) 160, 259, 428
Sse9I AATT 2 cut(s) 33, 575
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 2 cut(s) 96, 252
SspMI CTAG 1 cut(s) 186
SstI GAGCTC 1 cut(s) 478
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 230, 378
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 3 cut(s) 357, 499, 595
TaqI TCGA 2 cut(s) 201, 402
TasI AATT 2 cut(s) 33, 575
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 3 cut(s) 399, 410, 515
Tru1I TTAA 2 cut(s) 291, 503
Tru9I TTAA 2 cut(s) 291, 503
TscAI CASTG 1 cut(s) 282
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 4 cut(s) 573, 607, 635, 677
TspRI CASTG 1 cut(s) 282
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 683
XmnI GAANNNNTTC 1 cut(s) 626
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.