Rh1CG386700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015498
Physical Location & Seq
Forward (+)
65664620 .. 65665415
796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG386700.1

Sequence Viewer

Length: 693 bp
ATGGGTTGCAAGATAAACAACTCAAACCCTCCAATTCTTTGGAAGATCCCAACTAAGCAGCAGAGGCCTAGAACAAAAACCATCTCCTTCTCTTCCACCACCACAGACTCTCAAACCCAATATCAAAACTCTAAGCTTTACACTGTCAAGTTCAAGACCTTGAGCGCCTGCAAGCTTGGCATAGCCAGATATCCCGATTTTGAATATAATGCTGAAGGTGGCGGAGGAACCGGGTCTGGTACAACAGGAAGCAGCAACTCGAGTGGTGAAGTTTCAGTGTCATTTGACATTGAAACACTCTACATCCCACCATTGCAGACTTCAACAACAAAGTTTCTTGGATTGCCATTGCCACCGTTTTTGAAGATTGACATTGTCCCGGAGCTTTTTCGTGGCAGCATCAATCAAGAATCCGGCAAGGTTGATCTGGAGTTCAAGGCCAAGTTCTGGTTTTCGGTTGGAAGCATCTATAGAGCTCCTCCGCTTGTAGTGGAGACGGTTTTGACATCTGAGGAATCGAAAGGAACAATGAGAAGTGGAAAAGGGGAGAGGTTGGATGAACTAGGAAACTGCAAACTGGTTGGAGTGGCAACTGTTGATCCCATTGATGACTTTTTCATTAACACCTTCCTTGGCCTCCCTACTGAATGCCTTGCAGGCATGAATGCTATTATTTCTTTGTCTACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

24.97

Weight (kDa)

7.57

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62140
fragaria_vesca FvH4_7g28911 FvH4_7g28911
malus_domestica MD01G1195800.v1.1
prunus_persica Prupe.2G289100_v2.0.a1
pyrus_communis pycom01g20640 pycom07g24160
rosa_chinensis RchiOBHm_Chr1g0376581
rosa_laevigata RLG00000026596
rosa_roxburghii Rroxscaffold_4G00281970
rosa_rugosa Rorug01G0396500
rosa_samantha Rh1AG412100 Rh1BG372800 Rh1CG386700 Rh1DG403700
rosa_wichuraiana Rw1G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 447
AccI GTMKAC 1 cut(s) 683
AciI CCGC 2 cut(s) 222, 482
AclWI GGATC 2 cut(s) 40, 593
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 6 cut(s) 154, 203, 293, 324, 364, 436
AluBI AGCT 4 cut(s) 136, 175, 385, 476
AluI AGCT 4 cut(s) 136, 175, 385, 476
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 2 cut(s) 40, 593
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 3 cut(s) 65, 438, 634
ApeKI GCWGC 3 cut(s) 58, 252, 396
AspLEI GCGC 1 cut(s) 167
AsuC2I CCSGG 2 cut(s) 232, 380
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 259
BanII GRGCYC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 3 cut(s) 70, 264, 408
BccI CCATC 1 cut(s) 89
BcnI CCSGG 2 cut(s) 232, 380
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 69, 563
BfmI CTRYAG 1 cut(s) 469
BfoI RGCGCY 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 657
BisI GCNGC 3 cut(s) 59, 253, 397
BlsI GCNGC 3 cut(s) 60, 254, 398
Bme1390I CCNGG 2 cut(s) 232, 380
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 232, 380
BmsI GCATC 2 cut(s) 408, 474
BpmI CTGGAG 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 2 cut(s) 232, 380
BsaJI CCNNGG 1 cut(s) 631
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 582
Bse3DI GCAATG 2 cut(s) 311, 347
BseDI CCNNGG 1 cut(s) 631
BseGI GGATG 2 cut(s) 303, 562
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMI GCAATG 2 cut(s) 311, 347
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 582
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 3 cut(s) 70, 264, 408
BshFI GGCC 3 cut(s) 67, 440, 636
BsiHKAI GWGCWC 1 cut(s) 478
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 3 cut(s) 231, 380, 414
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 1 cut(s) 488
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 2 cut(s) 653, 670
BsnI GGCC 3 cut(s) 67, 440, 636
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 3 cut(s) 45, 424, 598
BspACI CCGC 2 cut(s) 222, 482
BspANI GGCC 3 cut(s) 67, 440, 636
BspCNI CTCAG 1 cut(s) 502
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 2 cut(s) 40, 593
BsrDI GCAATG 2 cut(s) 311, 347
BsrI ACTGG 1 cut(s) 582
BssECI CCNNGG 1 cut(s) 631
BssMI GATC 3 cut(s) 45, 424, 598
BssT1I CCWWGG 1 cut(s) 631
Bst4CI ACNGT 4 cut(s) 145, 357, 499, 595
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 169, 173, 658
BstDEI CTNAG 4 cut(s) 54, 132, 510, 690
BstF5I GGATG 2 cut(s) 303, 562
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 3 cut(s) 48, 427, 601
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 3 cut(s) 45, 424, 598
BstMWI GCNNNNNNNGC 3 cut(s) 64, 177, 657
BstSCI CCNGG 2 cut(s) 230, 378
BstSFI CTRYAG 1 cut(s) 469
BstV1I GCAGC 3 cut(s) 70, 264, 408
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 3 cut(s) 67, 440, 636
BtsCI GGATG 2 cut(s) 303, 562
BtsIMutI CAGTG 2 cut(s) 141, 282
Cac8I GCNNGC 3 cut(s) 169, 173, 658
CfoI GCGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 240
CspCI CAANNNNNGTGG 4 cut(s) 244, 279, 342, 377
CviAII CATG 1 cut(s) 661
CviJI RGCY 8 cut(s) 67, 136, 175, 185, 385, 440, 476, 636
CviKI_1 RGCY 8 cut(s) 67, 136, 175, 185, 385, 440, 476, 636
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 4 cut(s) 54, 132, 510, 690
DpnI GATC 3 cut(s) 47, 426, 600
DpnII GATC 3 cut(s) 45, 424, 598
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 476
Eco130I CCWWGG 1 cut(s) 631
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 476
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 631
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 1 cut(s) 664
FaiI YATR 4 cut(s) 182, 207, 471, 662
FaqI GGGAC 1 cut(s) 362
FatI CATG 1 cut(s) 660
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 3 cut(s) 59, 253, 397
FokI GGATG 2 cut(s) 290, 569
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 3 cut(s) 59, 253, 397
FspBI CTAG 2 cut(s) 69, 563
GlaI GCGC 1 cut(s) 166
GluI GCNGC 3 cut(s) 59, 253, 397
GsuI CTGGAG 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 3 cut(s) 67, 440, 636
HapII CCGG 3 cut(s) 231, 380, 414
HhaI GCGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 664
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HindIII AAGCTT 2 cut(s) 134, 173
HinfI GANTC 3 cut(s) 107, 410, 515
HpaII CCGG 3 cut(s) 231, 380, 414
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 684
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 4 cut(s) 154, 194, 407, 428
Hpy8I GTNNAC 1 cut(s) 684
HpyAV CCTTC 3 cut(s) 97, 209, 637
HpyCH4III ACNGT 4 cut(s) 145, 357, 499, 595
HpyCH4V TGCA 5 cut(s) 9, 171, 316, 573, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 177, 657
HpyF3I CTNAG 4 cut(s) 54, 132, 510, 690
Hsp92II CATG 1 cut(s) 664
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 3 cut(s) 45, 424, 598
LmnI GCTCC 2 cut(s) 382, 481
Lsp1109I GCAGC 3 cut(s) 70, 264, 408
LweI GCATC 2 cut(s) 408, 474
MaeI CTAG 2 cut(s) 69, 563
MalI GATC 3 cut(s) 47, 426, 600
MboI GATC 3 cut(s) 45, 424, 598
MboII GAAGA 3 cut(s) 55, 84, 376
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 3 cut(s) 439, 534, 562
MnlI CCTC 7 cut(s) 39, 57, 218, 489, 505, 543, 647
MseI TTAA 1 cut(s) 621
MspI CCGG 3 cut(s) 231, 380, 414
MspR9I CCNGG 2 cut(s) 232, 380
Mva1269I GAATGC 2 cut(s) 653, 670
MwoI GCNNNNNNNGC 3 cut(s) 64, 177, 657
NciI CCSGG 2 cut(s) 232, 380
NdeII GATC 3 cut(s) 45, 424, 598
NlaIII CATG 1 cut(s) 664
NlaIV GGNNCC 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 259
PceI AGGCCT 1 cut(s) 67
PctI GAATGC 2 cut(s) 653, 670
PfeI GAWTC 2 cut(s) 410, 515
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 3 cut(s) 60, 254, 398
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 259
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SacI GAGCTC 1 cut(s) 478
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 3 cut(s) 59, 253, 397
Sau3AI GATC 3 cut(s) 45, 424, 598
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 232, 380
SduI GDGCHC 1 cut(s) 478
SetI ASST 9 cut(s) 138, 161, 177, 220, 387, 423, 478, 554, 629
SfaNI GCATC 2 cut(s) 408, 474
SfcI CTRYAG 1 cut(s) 469
Sfr274I CTCGAG 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 259
SmlI CTYRAG 2 cut(s) 160, 259
SmoI CTYRAG 2 cut(s) 160, 259
Sse9I AATT 1 cut(s) 33
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 2 cut(s) 222, 482
SspMI CTAG 2 cut(s) 69, 563
SstI GAGCTC 1 cut(s) 478
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 230, 378
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 4 cut(s) 145, 357, 499, 595
TaqI TCGA 2 cut(s) 260, 518
TasI AATT 1 cut(s) 33
TfiI GAWTC 2 cut(s) 410, 515
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 2 cut(s) 148, 282
TseI GCWGC 3 cut(s) 58, 252, 396
TspDTI ATGAA 3 cut(s) 573, 607, 677
TspRI CASTG 2 cut(s) 148, 282
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 447
XhoI CTCGAG 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 683
XspI CTAG 2 cut(s) 69, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.