pycom07g24160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015498
Physical Location & Seq
Forward (+)
24924065 .. 24924508
444 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g24160.1

Sequence Viewer

Length: 444 bp
ATGCTTGTGCAACGCGTAGGTACAAACTACAAACCTCAATGCAAAGAGTTCCATGCCTATGCAATTTGGTCGAACAGTTCACCTAATCTGACTATCGAGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTGTATTATGCTACCGATTGACCTAACTCATATATGTAGTTCACCTAATCTTCACAAATCACAAAAAGAAAAGTGCCCGCCAAAAATGGGGTGCTGCAGGATAAACCCCTCCAACCCTCCAACTCTCTGGAAATTCCCAACTCAAAACCAGAATCCCAGAACAAAAACCATCATCTCCTTCTCTTCCCCTTCCTACACTCAAACCGAAGATTCGAAAATCAAAGCTTTTTGCTGTAAACTTCAAGACTTTGAGTGCCTGCAAGCTTGGCATGGCCAGATATCCGGACCTAGAATACAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.97

Weight (kDa)

9.82

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62140
fragaria_vesca FvH4_7g28911 FvH4_7g28911
malus_domestica MD01G1195800.v1.1
prunus_persica Prupe.2G289100_v2.0.a1
pyrus_communis pycom01g20640 pycom07g24160
rosa_chinensis RchiOBHm_Chr1g0376581
rosa_laevigata RLG00000026596
rosa_roxburghii Rroxscaffold_4G00281970
rosa_rugosa Rorug01G0396500
rosa_samantha Rh1AG412100 Rh1BG372800 Rh1CG386700 Rh1DG403700
rosa_wichuraiana Rw1G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 2 cut(s) 138, 272
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 383
AluBI AGCT 2 cut(s) 365, 404
AluI AGCT 2 cut(s) 365, 404
Aor13HI TCCGGA 1 cut(s) 422
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 138, 272
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 72, 174
AsuII TTCGAA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 414
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 51, 85
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
Bpu14I TTCGAA 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 227
BseAI TCCGGA 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 414
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 1 cut(s) 414
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 218
Bsp13I TCCGGA 1 cut(s) 422
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 414
BspEI TCCGGA 1 cut(s) 422
BspFNI CGCG 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 328
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 3 cut(s) 218, 398, 402
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 414
Cac8I GCNNGC 3 cut(s) 218, 398, 402
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 1 cut(s) 21
CviAII CATG 2 cut(s) 53, 410
CviJI RGCY 3 cut(s) 365, 404, 414
CviKI_1 RGCY 3 cut(s) 365, 404, 414
CviQI GTAC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 425
EcoRV GATATC 1 cut(s) 420
FaeI CATG 2 cut(s) 56, 413
FaiI YATR 7 cut(s) 54, 60, 149, 171, 173, 175, 411
FatI CATG 2 cut(s) 52, 409
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 235
HaeIII GGCC 1 cut(s) 414
HapII CCGG 1 cut(s) 423
HhaI GCGC 1 cut(s) 102
Hin1II CATG 2 cut(s) 56, 413
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HindIII AAGCTT 2 cut(s) 363, 402
HinfI GANTC 2 cut(s) 292, 350
HpaII CCGG 1 cut(s) 423
HphI GGTGA 2 cut(s) 72, 174
Hpy166II GTNNAC 3 cut(s) 80, 182, 377
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 3 cut(s) 268, 383, 423
Hpy8I GTNNAC 3 cut(s) 80, 182, 377
HpyAV CCTTC 2 cut(s) 328, 339
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 5 cut(s) 10, 42, 62, 237, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
Hsp92II CATG 2 cut(s) 56, 413
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 422
LpnPI CCDG 7 cut(s) 223, 253, 302, 310, 410, 428, 436
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 1 cut(s) 429
MboII GAAGA 3 cut(s) 182, 315, 359
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 3 cut(s) 63, 138, 272
MluI ACGCGT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 414
MmeI TCCRAC 2 cut(s) 276, 284
MnlI CCTC 3 cut(s) 45, 259, 267
Mox20I TGGCCA 1 cut(s) 414
MroI TCCGGA 1 cut(s) 422
MscI TGGCCA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 414
MspI CCGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 406
NlaIII CATG 2 cut(s) 56, 413
NspV TTCGAA 1 cut(s) 353
PfeI GAWTC 2 cut(s) 292, 350
PkrI GCNGC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 425
PstI CTGCAG 1 cut(s) 239
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 425
SduI GDGCHC 1 cut(s) 218
SetI ASST 8 cut(s) 22, 37, 85, 165, 187, 367, 406, 430
SfcI CTRYAG 1 cut(s) 235
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 3 cut(s) 63, 138, 272
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 3 cut(s) 71, 96, 353
TasI AATT 3 cut(s) 63, 138, 272
TfiI GAWTC 2 cut(s) 292, 350
TseI GCWGC 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 2 cut(s) 138, 272
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.