MD01G1195800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0015498
Physical Location & Seq
Forward (+)
29406513 .. 29407843
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1195800.v1.1.491

Sequence Viewer

Length: 699 bp
ATGGGGTGCTTCAGGATAAACACCTCCAACCTTCCAGCTCTATGGAAATTCCCAACTCAAAACCAGAATCCCAGAACCAAAACCATCATCTCCTTCTCTTCCCCTTCTTACTCTCAAACCGAAGATCGAAAATCGAAACTTTATACCGTAAACTTCAAGACTTTGAGTGCCTGCAAGCTTGGCATAGCCAGGTATCCTGACTTTGAATACAATGCTGAAGGTGGAGCGGGAACCGGGTCTGCCACAGAGGTCACGGAAAGCAACTCGAATGGCGATGTCTTGGTGTCGTTTGACATCGGAAGGCTCTATATCCCGCCATTGGAGAGTGCAACAACAAAGTTCTTGGGGTTGCCATTGCCGCCCTTTTTGAAGATTGACATTGTCCCTGAGTTCTTCAGTGGGAGCATCAATCCAGAATCCGGCCAGGTTGATCTCGAATTCAAGGCGGAGTTTTGGTTTTCGGTTGGGAGTATATACAAGGCACCTCCGCTGCTGGTGAAGACGGTATTGACATCCGAGGAATCGAAAGGAACGATGAGAAGTGGAAGAGGGGAGAGGTTGGATAAACAAGGAAAGTGCAGACTTGTTGGGGTGGCAACCGTTGATCCCATCGATGACTTTCTGATCAACTCCTTCCTTGGCCTTCCCACGGAATGCCTGGCCGACTTGAACGCTATTATTTCCTTCTCTAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.36

Weight (kDa)

5.37

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62140
fragaria_vesca FvH4_7g28911 FvH4_7g28911
malus_domestica MD01G1195800.v1.1
prunus_persica Prupe.2G289100_v2.0.a1
pyrus_communis pycom01g20640 pycom07g24160
rosa_chinensis RchiOBHm_Chr1g0376581
rosa_laevigata RLG00000026596
rosa_roxburghii Rroxscaffold_4G00281970
rosa_rugosa Rorug01G0396500
rosa_samantha Rh1AG412100 Rh1BG372800 Rh1CG386700 Rh1DG403700
rosa_wichuraiana Rw1G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 227
AciI CCGC 5 cut(s) 227, 314, 359, 446, 488
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 2 cut(s) 421, 660
AcsI RAATTY 2 cut(s) 47, 437
AcuI CTGAAG 2 cut(s) 237, 379
AfiI CCNNNNNNNGG 3 cut(s) 319, 419, 649
AgsI TTSAA 5 cut(s) 157, 206, 370, 442, 670
AjnI CCWGG 3 cut(s) 188, 423, 657
AluBI AGCT 3 cut(s) 38, 178, 693
AluI AGCT 3 cut(s) 38, 178, 693
AlwI GGATC 1 cut(s) 599
AoxI GGCC 3 cut(s) 421, 640, 660
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 2 cut(s) 47, 437
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 508
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 477
BccI CCATC 2 cut(s) 92, 617
BciT130I CCWGG 3 cut(s) 190, 425, 659
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 1 cut(s) 235
BfaI CTAG 1 cut(s) 690
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 2 cut(s) 359, 491
BlsI GCNGC 2 cut(s) 360, 492
Bme1390I CCNGG 4 cut(s) 190, 235, 425, 659
BmiI GGNNCC 2 cut(s) 232, 483
BmrFI CCNGG 4 cut(s) 190, 235, 425, 659
BmsI GCATC 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 235
Bsa29I ATCGAT 1 cut(s) 612
BsaJI CCNNGG 3 cut(s) 516, 637, 648
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 419, 649
Bse3DI GCAATG 1 cut(s) 353
BseBI CCWGG 3 cut(s) 190, 425, 659
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 3 cut(s) 516, 637, 648
BseGI GGATG 1 cut(s) 512
BseLI CCNNNNNNNGG 3 cut(s) 319, 419, 649
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 477
BsgI GTGCAG 1 cut(s) 598
BshFI GGCC 3 cut(s) 423, 642, 662
BshNI GGYRCC 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 612
BsiSI CCGG 2 cut(s) 234, 420
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 3 cut(s) 319, 419, 649
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 3 cut(s) 423, 642, 662
Bsp143I GATC 4 cut(s) 124, 430, 604, 624
BspACI CCGC 5 cut(s) 227, 314, 359, 446, 488
BspANI GGCC 3 cut(s) 423, 642, 662
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 232, 483
BspPI GGATC 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 481
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 516, 637, 648
BssMI GATC 4 cut(s) 124, 430, 604, 624
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 3 cut(s) 190, 425, 659
Bst4CI ACNGT 3 cut(s) 148, 505, 601
Bst6I CTCTTC 2 cut(s) 103, 541
BstC8I GCNNGC 2 cut(s) 172, 176
BstDEI CTNAG 2 cut(s) 387, 696
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 1 cut(s) 512
BstKTI GATC 4 cut(s) 127, 433, 607, 627
BstMBI GATC 4 cut(s) 124, 430, 604, 624
BstMWI GCNNNNNNNGC 2 cut(s) 180, 358
BstNI CCWGG 3 cut(s) 190, 425, 659
BstSCI CCNGG 4 cut(s) 188, 233, 423, 657
BstV1I GCAGC 1 cut(s) 477
BstV2I GAAGAC 1 cut(s) 506
BstXI CCANNNNNNTGG 1 cut(s) 42
Bsu15I ATCGAT 1 cut(s) 612
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 3 cut(s) 423, 642, 662
BsuTUI ATCGAT 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 512
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 172, 176
ClaI ATCGAT 1 cut(s) 612
CviJI RGCY 8 cut(s) 38, 178, 188, 304, 423, 642, 662, 693
CviKI_1 RGCY 8 cut(s) 38, 178, 188, 304, 423, 642, 662, 693
DdeI CTNAG 2 cut(s) 387, 696
DpnI GATC 4 cut(s) 126, 432, 606, 626
DpnII GATC 4 cut(s) 124, 430, 604, 624
EaeI YGGCCR 2 cut(s) 421, 660
Eam1104I CTCTTC 2 cut(s) 103, 541
EarI CTCTTC 2 cut(s) 103, 541
EciI GGCGGA 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 637
Eco57I CTGAAG 2 cut(s) 237, 379
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 3 cut(s) 188, 423, 657
EcoT14I CCWWGG 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 637
FaiI YATR 6 cut(s) 43, 144, 185, 309, 473, 475
FaqI GGGAC 1 cut(s) 368
FauI CCCGC 2 cut(s) 220, 321
FbaI TGATCA 1 cut(s) 624
Fnu4HI GCNGC 2 cut(s) 359, 491
FokI GGATG 1 cut(s) 499
Fsp4HI GCNGC 2 cut(s) 359, 491
FspBI CTAG 1 cut(s) 690
GluI GCNGC 2 cut(s) 359, 491
HaeIII GGCC 3 cut(s) 423, 642, 662
HapII CCGG 2 cut(s) 234, 420
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 3 cut(s) 67, 416, 521
HpaII CCGG 2 cut(s) 234, 420
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 299, 517, 624
Hpy188III TCNNGA 5 cut(s) 13, 157, 197, 413, 434
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 8 cut(s) 41, 103, 114, 212, 294, 643, 653, 694
HpyCH4III ACNGT 3 cut(s) 148, 505, 601
HpyCH4V TGCA 3 cut(s) 174, 329, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 358
HpyF3I CTNAG 2 cut(s) 387, 696
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 4 cut(s) 124, 430, 604, 624
LmnI GCTCC 2 cut(s) 224, 402
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 1 cut(s) 414
MaeI CTAG 1 cut(s) 690
MaeIII GTNAC 1 cut(s) 250
MalI GATC 4 cut(s) 126, 432, 606, 626
MbiI CCGCTC 1 cut(s) 227
MboI GATC 4 cut(s) 124, 430, 604, 624
MboII GAAGA 6 cut(s) 90, 134, 382, 385, 511, 558
MluCI AATT 2 cut(s) 47, 437
MmeI TCCRAC 2 cut(s) 51, 540
MnlI CCTC 6 cut(s) 34, 241, 495, 511, 542, 549
MspA1I CMGCKG 1 cut(s) 490
MspI CCGG 2 cut(s) 234, 420
MspR9I CCNGG 4 cut(s) 190, 235, 425, 659
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 3 cut(s) 190, 425, 659
MwoI GCNNNNNNNGC 2 cut(s) 180, 358
NciI CCSGG 1 cut(s) 235
NdeII GATC 4 cut(s) 124, 430, 604, 624
NlaIV GGNNCC 2 cut(s) 232, 483
NmuCI GTSAC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PctI GAATGC 1 cut(s) 659
PfeI GAWTC 3 cut(s) 67, 416, 521
PflFI GACNNNGTC 1 cut(s) 380
PkrI GCNGC 2 cut(s) 360, 492
Psp6I CCWGG 3 cut(s) 188, 423, 657
PspGI CCWGG 3 cut(s) 188, 423, 657
PspN4I GGNNCC 2 cut(s) 232, 483
PsyI GACNNNGTC 1 cut(s) 380
SatI GCNGC 2 cut(s) 359, 491
Sau3AI GATC 4 cut(s) 124, 430, 604, 624
ScrFI CCNGG 4 cut(s) 190, 235, 425, 659
SfaNI GCATC 1 cut(s) 414
Sse9I AATT 2 cut(s) 47, 437
SsiI CCGC 5 cut(s) 227, 314, 359, 446, 488
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 4 cut(s) 188, 233, 423, 657
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 3 cut(s) 148, 505, 601
TaqI TCGA 6 cut(s) 127, 134, 266, 435, 524, 612
TasI AATT 2 cut(s) 47, 437
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 3 cut(s) 67, 416, 521
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 2 cut(s) 269, 665
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 1 cut(s) 380
XapI RAATTY 2 cut(s) 47, 437
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.