Rh1AG412100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015498
Physical Location & Seq
Reverse (-)
64515433 .. 64515702
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG412100.1

Sequence Viewer

Length: 270 bp
ATGGGTTGCAAGATAAACAACTCAAACCCTCCAATTCTTTGGAAGATCCCAACTAAGCAGCAGAGGCCTAGAACAAAAACCATCTCCTTCTCTTCCACCACCACTGACTCTCAAACCCAATATCAAAACTCTAAGCTTTACACTCTCAAGTTCAAGACCTTGAGTTCCTGCAAGCTTGGCATAGCCAGATATCCCGATTTCGAATACAATGCTGAAGGTGGCGGAGGAACCGGGTCTGGTACAACAGAAAGCAGCAACTCGAGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

9.6

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62140
fragaria_vesca FvH4_7g28911 FvH4_7g28911
malus_domestica MD01G1195800.v1.1
prunus_persica Prupe.2G289100_v2.0.a1
pyrus_communis pycom01g20640 pycom07g24160
rosa_chinensis RchiOBHm_Chr1g0376581
rosa_laevigata RLG00000026596
rosa_roxburghii Rroxscaffold_4G00281970
rosa_rugosa Rorug01G0396500
rosa_samantha Rh1AG412100 Rh1BG372800 Rh1CG386700 Rh1DG403700
rosa_wichuraiana Rw1G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 2 cut(s) 136, 175
AluI AGCT 2 cut(s) 136, 175
AlwI GGATC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 58, 252
AsuC2I CCSGG 1 cut(s) 232
AsuII TTCGAA 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 259
BbvI GCAGC 2 cut(s) 70, 264
BccI CCATC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BcnI CCSGG 1 cut(s) 232
BfaI CTAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 59, 253
BlsI GCNGC 2 cut(s) 60, 254
Bme1390I CCNGG 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 232
Bpu14I TTCGAA 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 131, 181
BpuMI CCSGG 1 cut(s) 232
BseXI GCAGC 2 cut(s) 70, 264
BshFI GGCC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 231
BsnI GGCC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 201
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 1 cut(s) 40
BspT104I TTCGAA 1 cut(s) 201
BssMI GATC 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 54, 132
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 64, 177
BstSCI CCNGG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 70, 264
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 240
CspCI CAANNNNNGTGG 1 cut(s) 244
CviJI RGCY 4 cut(s) 67, 136, 175, 185
CviKI_1 RGCY 4 cut(s) 67, 136, 175, 185
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 54, 132
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 67
Eco32I GATATC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 259
EcoRV GATATC 1 cut(s) 191
FaiI YATR 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 59, 253
Fsp4HI GCNGC 2 cut(s) 59, 253
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 59, 253
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 231
HindIII AAGCTT 2 cut(s) 134, 173
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 231
Hpy188III TCNNGA 2 cut(s) 154, 194
HpyAV CCTTC 2 cut(s) 97, 209
HpyCH4V TGCA 2 cut(s) 9, 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 177
HpyF3I CTNAG 2 cut(s) 54, 132
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 4 cut(s) 181, 199, 222, 244
Lsp1109I GCAGC 2 cut(s) 70, 264
MaeI CTAG 1 cut(s) 69
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 55, 84
MflI RGATCY 1 cut(s) 45
MluCI AATT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 3 cut(s) 39, 57, 218
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 64, 177
NciI CCSGG 1 cut(s) 232
NdeII GATC 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 229
NspV TTCGAA 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 259
PceI AGGCCT 1 cut(s) 67
PkrI GCNGC 2 cut(s) 60, 254
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 259
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SatI GCNGC 2 cut(s) 59, 253
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 232
SetI ASST 4 cut(s) 138, 161, 177, 220
Sfr274I CTCGAG 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 259
SmlI CTYRAG 3 cut(s) 146, 160, 259
SmoI CTYRAG 3 cut(s) 146, 160, 259
Sse9I AATT 1 cut(s) 33
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 69
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 230
TaqI TCGA 2 cut(s) 201, 260
TasI AATT 1 cut(s) 33
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 58, 252
TspRI CASTG 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 259
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.