AT5G62200

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014997
Physical Location & Seq
Reverse (-)
24984048 .. 24985895
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62200.1

Sequence Viewer

Length: 573 bp
ATGGCGTCCGTACGACTCTTCTTCACTTTAATCTCCTTCGTCTTCATTATATCCACCTCTGTTTACGAATCAAAAGTATTGGATCCTCCTCACGTCGCTGAATCATTCAACGTTAGCCTCATCCAGAAATTGGGGAATACTTGTGCTTACACAGTGATCATCTCGACGAGCTGTTCGTCGACTAGGTACACGCGCGATCAGATCAGCGTCGCTTTCGGCGATGGCTATGGTAACCAGATATACGCACCAAGGCTTGATGATCCATCTACAAAAACGTTTGAGCAATGTTCATCAGATACATTTCAGATAAACGGACCATGTACATACCAGATATGCTATGTATATCTCTACAGGTCTGGTCCAGATGGTTGGATCCCAAACACTGTAAAGATATATAGCCATGGCTCTAAAGCGGTCACCTTCCCATATAACACATATGTTCCTGAGAGTGTATGGTATGGTTTCAATTACTGCAACAGCGCCTCAGATTCTAATGTCCTTGCCATTGGTCTCAGAAGGAGCGTGATCATACTCCTAGGTTTTGTTGTCGCCGGTACCACATTGCTCTTGTAA

Protein Analysis

190

Amino Acids

21.07

Weight (kDa)

6.69

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 35 - 158 1.7e-58 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62200
fragaria_vesca FvH4_7g28400
malus_domestica MD01G1187700.v1.1 MD07G1259800.v1.1
prunus_persica Prupe.2G284100_v2.0.a1
pyrus_communis pycom01g19960 pycom07g23320
rosa_chinensis RchiOBHm_Chr1g0375361
rosa_laevigata RLG00000026668
rosa_rugosa Rorug01G0390500.1 Rorug01G0390600
rosa_samantha Rh1AG401000 Rh1BG363300 Rh1CG376600 Rh1DG394100
rosa_wichuraiana Rw1G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 130
AccI GTMKAC 1 cut(s) 179
AccII CGCG 2 cut(s) 193, 195
AciI CCGC 1 cut(s) 413
AclI AACGTT 2 cut(s) 111, 275
AclWI GGATC 5 cut(s) 77, 90, 254, 367, 380
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 12, 188, 322, 556
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 109, 466
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 5 cut(s) 77, 90, 254, 367, 380
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
Asp718I GGTACC 1 cut(s) 554
AspA2I CCTAGG 1 cut(s) 535
AspLEI GCGC 2 cut(s) 195, 482
AspS9I GGNCC 2 cut(s) 314, 359
AsuHPI GGTGA 1 cut(s) 409
AvaII GGWCC 2 cut(s) 314, 359
AvrII CCTAGG 1 cut(s) 535
BamHI GGATCC 2 cut(s) 82, 372
BanI GGYRCC 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 34
BccI CCATC 3 cut(s) 215, 271, 359
BclI TGATCA 2 cut(s) 156, 525
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 2 cut(s) 183, 536
BfmI CTRYAG 1 cut(s) 349
BfoI RGCGCY 1 cut(s) 483
BlnI CCTAGG 1 cut(s) 535
Bme18I GGWCC 2 cut(s) 314, 359
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 314, 359
BmiI GGNNCC 3 cut(s) 84, 374, 556
BpiI GAAGAC 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 3 cut(s) 248, 400, 535
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 551
Bse3DI GCAATG 2 cut(s) 290, 560
BseDI CCNNGG 3 cut(s) 248, 400, 535
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 2 cut(s) 290, 560
BseMII CTCAG 3 cut(s) 435, 498, 526
BseRI GAGGAG 1 cut(s) 78
Bsh1236I CGCG 2 cut(s) 193, 195
BshNI GGYRCC 1 cut(s) 554
BsiSI CCGG 1 cut(s) 552
BsiWI CGTACG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 515
Bso31I GGTCTC 1 cut(s) 515
Bsp1407I TGTACA 1 cut(s) 320
Bsp143I GATC 7 cut(s) 82, 156, 196, 201, 259, 372, 525
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 1 cut(s) 413
BspCNI CTCAG 3 cut(s) 436, 497, 525
BspFNI CGCG 2 cut(s) 193, 195
BspLI GGNNCC 3 cut(s) 84, 374, 556
BspPI GGATC 5 cut(s) 77, 90, 254, 367, 380
BspT107I GGYRCC 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 515
BsrDI GCAATG 2 cut(s) 290, 560
BsrFI RCCGGY 1 cut(s) 551
BsrGI TGTACA 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 3 cut(s) 248, 400, 535
BssMI GATC 7 cut(s) 82, 156, 196, 201, 259, 372, 525
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 248, 400, 535
Bst4CI ACNGT 2 cut(s) 154, 385
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 444, 484, 512
BstDSI CCRYGG 1 cut(s) 400
BstEII GGTNACC 2 cut(s) 230, 415
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 2 cut(s) 193, 195
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 2 cut(s) 195, 482
BstKTI GATC 7 cut(s) 85, 159, 199, 204, 262, 375, 528
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 7 cut(s) 82, 156, 196, 201, 259, 372, 525
BstPI GGTNACC 2 cut(s) 230, 415
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 2 cut(s) 193, 195
BstV2I GAAGAC 1 cut(s) 34
BstX2I RGATCY 2 cut(s) 82, 372
BstXI CCANNNNNNTGG 1 cut(s) 369
BstYI RGATCY 2 cut(s) 82, 372
BtgI CCRYGG 1 cut(s) 400
BtgZI GCGATG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 159, 381
CfoI GCGC 2 cut(s) 195, 482
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 2 cut(s) 314, 359
CseI GACGC 1 cut(s) 196
Csp6I GTAC 4 cut(s) 11, 187, 321, 555
CviAII CATG 2 cut(s) 318, 401
CviJI RGCY 6 cut(s) 117, 171, 225, 253, 399, 405
CviKI_1 RGCY 6 cut(s) 117, 171, 225, 253, 399, 405
CviQI GTAC 4 cut(s) 11, 187, 321, 555
DdeI CTNAG 3 cut(s) 444, 484, 512
DpnI GATC 7 cut(s) 84, 158, 198, 203, 261, 374, 527
DpnII GATC 7 cut(s) 82, 156, 196, 201, 259, 372, 525
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 3 cut(s) 248, 400, 535
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 2 cut(s) 314, 359
Eco91I GGTNACC 2 cut(s) 230, 415
EcoO65I GGTNACC 2 cut(s) 230, 415
EcoT14I CCWWGG 3 cut(s) 248, 400, 535
ErhI CCWWGG 3 cut(s) 248, 400, 535
FaeI CATG 2 cut(s) 321, 404
FatI CATG 2 cut(s) 317, 400
FauNDI CATATG 1 cut(s) 436
FbaI TGATCA 2 cut(s) 156, 525
FblI GTMKAC 1 cut(s) 179
FokI GGATG 1 cut(s) 107
FspBI CTAG 2 cut(s) 183, 536
GlaI GCGC 2 cut(s) 194, 481
HaeII RGCGCY 1 cut(s) 483
HapII CCGG 1 cut(s) 552
HgaI GACGC 1 cut(s) 196
HhaI GCGC 2 cut(s) 195, 482
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 321, 404
Hin6I GCGC 2 cut(s) 193, 480
HinP1I GCGC 2 cut(s) 193, 480
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 4 cut(s) 15, 68, 101, 488
HpaII CCGG 1 cut(s) 552
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 3 cut(s) 64, 180, 189
Hpy188I TCNGA 5 cut(s) 201, 295, 306, 487, 515
Hpy188III TCNNGA 4 cut(s) 124, 163, 362, 443
Hpy8I GTNNAC 3 cut(s) 64, 180, 189
Hpy99I CGWCG 4 cut(s) 98, 169, 181, 212
HpyAV CCTTC 3 cut(s) 46, 430, 510
HpyCH4III ACNGT 2 cut(s) 154, 385
HpyCH4IV ACGT 3 cut(s) 93, 111, 275
HpyCH4V TGCA 1 cut(s) 474
HpyF3I CTNAG 3 cut(s) 444, 484, 512
HpySE526I ACGT 3 cut(s) 93, 111, 275
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 321, 404
HspAI GCGC 2 cut(s) 193, 480
KpnI GGTACC 1 cut(s) 558
Ksp22I TGATCA 2 cut(s) 156, 525
Kzo9I GATC 7 cut(s) 82, 156, 196, 201, 259, 372, 525
LmnI GCTCC 1 cut(s) 519
LpnPI CCDG 8 cut(s) 137, 248, 337, 341, 342, 375, 456, 565
MaeI CTAG 2 cut(s) 183, 536
MaeII ACGT 3 cut(s) 93, 111, 275
MaeIII GTNAC 2 cut(s) 230, 415
MalI GATC 7 cut(s) 84, 158, 198, 203, 261, 374, 527
MboI GATC 7 cut(s) 82, 156, 196, 201, 259, 372, 525
MboII GAAGA 3 cut(s) 10, 13, 34
MflI RGATCY 2 cut(s) 82, 372
MluCI AATT 2 cut(s) 128, 466
MlyI GAGTC 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 5 cut(s) 67, 96, 99, 128, 493
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 552
MvnI CGCG 2 cut(s) 193, 195
NcoI CCATGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 436
NdeII GATC 7 cut(s) 82, 156, 196, 201, 259, 372, 525
NlaIII CATG 2 cut(s) 321, 404
NlaIV GGNNCC 3 cut(s) 84, 374, 556
NmuCI GTSAC 1 cut(s) 415
PcsI WCGNNNNNNNCGW 2 cut(s) 173, 216
PfeI GAWTC 3 cut(s) 68, 101, 488
Pfl23II CGTACG 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 130
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
Psp1406I AACGTT 2 cut(s) 111, 275
PspEI GGTNACC 2 cut(s) 230, 415
PspLI CGTACG 1 cut(s) 10
PspN4I GGNNCC 3 cut(s) 84, 374, 556
PspPI GGNCC 2 cut(s) 314, 359
PsuI RGATCY 2 cut(s) 82, 372
RsaI GTAC 4 cut(s) 12, 188, 322, 556
RsaNI GTAC 4 cut(s) 11, 187, 321, 555
SalI GTCGAC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 7 cut(s) 82, 156, 196, 201, 259, 372, 525
Sau96I GGNCC 2 cut(s) 314, 359
SchI GAGTC 1 cut(s) 9
SetI ASST 9 cut(s) 59, 96, 114, 173, 188, 278, 356, 422, 541
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 2 cut(s) 314, 359
Sse9I AATT 2 cut(s) 128, 466
SsiI CCGC 1 cut(s) 413
SspMI CTAG 2 cut(s) 183, 536
StyI CCWWGG 3 cut(s) 248, 400, 535
TaaI ACNGT 2 cut(s) 154, 385
TaiI ACGT 3 cut(s) 96, 114, 278
TaqI TCGA 2 cut(s) 164, 179
TasI AATT 2 cut(s) 128, 466
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 3 cut(s) 68, 101, 488
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 159, 388
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 34, 279
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 2 cut(s) 159, 388
Van91I CCANNNNNTGG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 314, 359
XmaJI CCTAGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 179
XspI CTAG 2 cut(s) 183, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.