MD01G1187700.v1.1

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0014997
Physical Location & Seq
Forward (+)
28614825 .. 28616755
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1187700.v1.1.491

Sequence Viewer

Length: 636 bp
ATGCTTTTCTTTGACTCCTCCGCATCCCGCAAGTCGTCGCCGTCGCCGTCACATTCTATCTGCAGCAAATCATCAAACATGTTCAGAGCGTTCTCTTTTCTTCTTCTCCTCCAAGCTTCCATCGTCTTCACGCTCTCGGAGGCCAAGCTAAGCATCATACATCCCGAAGCTGCCGCCAAGGGCTTCAACGTCAGCAACGTCCAGAATGCGGGGAGTTGTTCGTACACGGCGGTGATAACCACGAGCTGCTCCTCGACGAGGTACACGAGGGATCAGATCAGTCTCTCCTTTGGGGATGCTTATGGCAACCAGATTTATGCACCGCGACTGGATGATCCATCTTCAAGAACATTTGAACGGTGTTCTACAGACACATTTGAGATTTACGGCCCCTGTGCATACCAAATCTGCTATTTGTATGTCTACAGAACCGGACTGGATGGTTGGAAGCCTGAGAATGTGAAAATCTATGGTCACAATTCCAGGGCTGTTACATTTAGCTACAACACCTTCATTCCCAGTGATCTTTGGTACGGCTTTAACTGGTGCAACACCGCCTCCTCTTCCGCCCGGAAATCTGCTCACAGATGGCCTATGTATGCCATAGCTGCGCTCTTTGTTTTTCTTATATTGTAA

Protein Analysis

212

Amino Acids

23.61

Weight (kDa)

8.82

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 67 - 183 1.8e-51 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62200
fragaria_vesca FvH4_7g28400
malus_domestica MD01G1187700.v1.1 MD07G1259800.v1.1
prunus_persica Prupe.2G284100_v2.0.a1
pyrus_communis pycom01g19960 pycom07g23320
rosa_chinensis RchiOBHm_Chr1g0375361
rosa_laevigata RLG00000026668
rosa_rugosa Rorug01G0390500.1 Rorug01G0390600
rosa_samantha Rh1AG401000 Rh1BG363300 Rh1CG376600 Rh1DG394100
rosa_wichuraiana Rw1G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AccII CGCG 1 cut(s) 325
AciI CCGC 8 cut(s) 21, 28, 174, 209, 230, 323, 555, 567
AclWI GGATC 2 cut(s) 279, 329
AfaI GTAC 3 cut(s) 224, 263, 533
AfiI CCNNNNNNNGG 2 cut(s) 208, 258
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 3 cut(s) 187, 345, 356
AjnI CCWGG 1 cut(s) 482
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 6 cut(s) 116, 148, 170, 246, 501, 608
AluI AGCT 6 cut(s) 116, 148, 170, 246, 501, 608
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 2 cut(s) 279, 329
AoxI GGCC 3 cut(s) 141, 388, 590
ApeKI GCWGC 4 cut(s) 63, 170, 246, 608
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 1 cut(s) 389
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 1 cut(s) 244
BauI CACGAG 2 cut(s) 241, 265
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 4 cut(s) 75, 157, 233, 595
BccI CCATC 4 cut(s) 128, 346, 434, 582
BceAI ACGGC 5 cut(s) 25, 31, 243, 403, 550
BciT130I CCWGG 1 cut(s) 484
BcnI CCSGG 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 287
BfmI CTRYAG 3 cut(s) 61, 366, 424
BisI GCNGC 5 cut(s) 64, 171, 174, 247, 609
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 5 cut(s) 65, 172, 175, 248, 610
Bme1390I CCNGG 2 cut(s) 484, 571
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 2 cut(s) 484, 571
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 3 cut(s) 32, 162, 286
BmuI ACTGGG 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 571
BsaJI CCNNGG 2 cut(s) 177, 483
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 258
Bse1I ACTGG 4 cut(s) 333, 441, 519, 548
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 177, 483
BseGI GGATG 5 cut(s) 23, 160, 301, 337, 445
BseLI CCNNNNNNNGG 2 cut(s) 208, 258
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 4 cut(s) 333, 441, 519, 548
BseRI GAGGAG 4 cut(s) 7, 98, 241, 550
BseXI GCAGC 4 cut(s) 75, 157, 233, 595
Bsh1236I CGCG 1 cut(s) 325
BshFI GGCC 3 cut(s) 143, 390, 592
BsiSI CCGG 2 cut(s) 432, 571
BslI CCNNNNNNNGG 2 cut(s) 208, 258
BsmAI GTCTC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 3 cut(s) 143, 390, 592
Bsp143I GATC 4 cut(s) 271, 276, 334, 523
Bsp1720I GCTNAGC 1 cut(s) 149
BspACI CCGC 8 cut(s) 21, 28, 174, 209, 230, 323, 555, 567
BspANI GGCC 3 cut(s) 143, 390, 592
BspCNI CTCAG 1 cut(s) 445
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 391
BspMAI CTGCAG 1 cut(s) 65
BspPI GGATC 2 cut(s) 279, 329
BsrI ACTGG 4 cut(s) 333, 441, 519, 548
BssECI CCNNGG 2 cut(s) 177, 483
BssMI GATC 4 cut(s) 271, 276, 334, 523
BssSI CACGAG 2 cut(s) 241, 265
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 2 cut(s) 241, 265
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 568
BstDEI CTNAG 2 cut(s) 149, 453
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 5 cut(s) 23, 160, 301, 337, 445
BstFNI CGCG 1 cut(s) 325
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 4 cut(s) 274, 279, 337, 526
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 4 cut(s) 271, 276, 334, 523
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 1 cut(s) 484
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 482, 569
BstSFI CTRYAG 3 cut(s) 61, 366, 424
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 4 cut(s) 75, 157, 233, 595
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 3 cut(s) 143, 390, 592
BtsCI GGATG 5 cut(s) 23, 160, 301, 337, 445
BtsIMutI CAGTG 1 cut(s) 526
CfoI GCGC 1 cut(s) 613
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 3 cut(s) 223, 262, 532
CviAII CATG 1 cut(s) 79
CviQI GTAC 3 cut(s) 223, 262, 532
DdeI CTNAG 2 cut(s) 149, 453
DpnI GATC 4 cut(s) 273, 278, 336, 525
DpnII GATC 4 cut(s) 271, 276, 334, 523
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
EciI GGCGGA 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 82
FatI CATG 1 cut(s) 78
FauI CCCGC 2 cut(s) 35, 202
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 5 cut(s) 64, 171, 174, 247, 609
FokI GGATG 5 cut(s) 10, 147, 308, 344, 452
Fsp4HI GCNGC 5 cut(s) 64, 171, 174, 247, 609
GlaI GCGC 1 cut(s) 612
GluI GCNGC 5 cut(s) 64, 171, 174, 247, 609
HaeIII GGCC 3 cut(s) 143, 390, 592
HapII CCGG 2 cut(s) 432, 571
HhaI GCGC 1 cut(s) 613
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 1 cut(s) 14
HpaII CCGG 2 cut(s) 432, 571
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 3 cut(s) 225, 264, 424
Hpy188I TCNGA 3 cut(s) 86, 139, 276
Hpy188III TCNNGA 3 cut(s) 164, 202, 345
Hpy8I GTNNAC 3 cut(s) 225, 264, 424
Hpy99I CGWCG 3 cut(s) 40, 46, 259
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4IV ACGT 2 cut(s) 189, 198
HpyCH4V TGCA 4 cut(s) 63, 320, 398, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 2 cut(s) 149, 453
HpySE526I ACGT 2 cut(s) 189, 198
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 611
Kzo9I GATC 4 cut(s) 271, 276, 334, 523
LmnI GCTCC 1 cut(s) 254
Lsp1109I GCAGC 4 cut(s) 75, 157, 233, 595
LweI GCATC 3 cut(s) 32, 162, 286
MaeII ACGT 2 cut(s) 189, 198
MaeIII GTNAC 3 cut(s) 48, 473, 490
MalI GATC 4 cut(s) 273, 278, 336, 525
MboI GATC 4 cut(s) 271, 276, 334, 523
MboII GAAGA 5 cut(s) 92, 95, 118, 333, 555
MluCI AATT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 8 cut(s) 28, 119, 133, 252, 261, 262, 568, 571
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 2 cut(s) 432, 571
MspR9I CCNGG 2 cut(s) 484, 571
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 484
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 608
NciI CCSGG 1 cut(s) 571
NdeII GATC 4 cut(s) 271, 276, 334, 523
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 2 cut(s) 48, 473
NspI RCATGY 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 230
PciI ACATGT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 3 cut(s) 44, 195, 263
PctI GAATGC 1 cut(s) 211
PkrI GCNGC 5 cut(s) 65, 172, 175, 248, 610
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PscI ACATGT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 65
RsaI GTAC 3 cut(s) 224, 263, 533
RsaNI GTAC 3 cut(s) 223, 262, 532
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 5 cut(s) 64, 171, 174, 247, 609
Sau3AI GATC 4 cut(s) 271, 276, 334, 523
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 484, 571
SfaNI GCATC 3 cut(s) 32, 162, 286
SfcI CTRYAG 3 cut(s) 61, 366, 424
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 1 cut(s) 478
SsiI CCGC 8 cut(s) 21, 28, 174, 209, 230, 323, 555, 567
StyD4I CCNGG 2 cut(s) 482, 569
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 360
TaiI ACGT 2 cut(s) 192, 201
TaqI TCGA 1 cut(s) 254
TasI AATT 1 cut(s) 478
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 2 cut(s) 48, 473
TseI GCWGC 4 cut(s) 63, 170, 246, 608
Tsp45I GTSAC 2 cut(s) 48, 473
TspDTI ATGAA 1 cut(s) 502
TspRI CASTG 1 cut(s) 526
XagI CCTNNNNNAGG 1 cut(s) 256
XceI RCATGY 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.