Rh1DG394100

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014997
Physical Location & Seq
Reverse (-)
61189969 .. 61191395
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG394100.1

Sequence Viewer

Length: 444 bp
ATGGAAAAAAAGAGTGCCGGGAGTTGTTCTTATACGGTGGATATAACCACGAGCTGCTCATCAACGAGGTACACAAGGGATCAAATCAGTATCTCATTCGGGGATGTTTATGGCAACCAGATTTATGCTCCGCGACTAGACGATCCATCCTCGAGAACGTTTGAGAGTTGTTCTACGGACACATTTGAGATATATGGACCCTGTGCATACCAAATCTGCTATGTCTATCTTTACAGAACAGGACCAGATGGTTGGAAACCGGAGAGTGTGAAAATCTATAGTCATAATTCCAGGGCTGTTTCGTTCTACTACAATACCTTCATTCCCAGTGACATTTGGTATGGATTCAACTTGTGCCAGAATGCTTCCTCTTCACACCGGCAATCTGCTTATGGATGGTTTATATATGTTTTAGTTGGGCTTCTTGTGTCGCTTCTCTTGTAG

Protein Analysis

147

Amino Acids

16.73

Weight (kDa)

6.04

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 3 - 119 1.4e-53 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62200
fragaria_vesca FvH4_7g28400
malus_domestica MD01G1187700.v1.1 MD07G1259800.v1.1
prunus_persica Prupe.2G284100_v2.0.a1
pyrus_communis pycom01g19960 pycom07g23320
rosa_chinensis RchiOBHm_Chr1g0375361
rosa_laevigata RLG00000026668
rosa_rugosa Rorug01G0390500.1 Rorug01G0390600
rosa_samantha Rh1AG401000 Rh1BG363300 Rh1CG376600 Rh1DG394100
rosa_wichuraiana Rw1G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 133
AciI CCGC 1 cut(s) 131
AclI AACGTT 1 cut(s) 158
AclWI GGATC 2 cut(s) 87, 137
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 1 cut(s) 349
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
AlwI GGATC 2 cut(s) 87, 137
Ama87I CYCGRG 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 197, 242
AsuC2I CCSGG 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 2 cut(s) 197, 242
BauI CACGAG 1 cut(s) 49
BbvI GCAGC 1 cut(s) 41
BccI CCATC 3 cut(s) 154, 242, 390
BciT130I CCWGG 1 cut(s) 292
BcnI CCSGG 1 cut(s) 19
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 19, 292
Bme18I GGWCC 2 cut(s) 197, 242
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 197, 242
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 19, 292
BmrI ACTGGG 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 109, 146, 401
BseNI ACTGG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 3 cut(s) 18, 260, 379
BsmI GAATGC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 151
Bsp143I GATC 2 cut(s) 79, 142
BspACI CCGC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 2 cut(s) 87, 137
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 2 cut(s) 79, 142
BssSI CACGAG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 376
BstF5I GGATG 3 cut(s) 109, 146, 401
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 2 cut(s) 82, 145
BstMBI GATC 2 cut(s) 79, 142
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 17, 290
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 109, 146, 401
BtsIMutI CAGTG 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 197, 242
Csp6I GTAC 1 cut(s) 70
CviJI RGCY 3 cut(s) 54, 296, 421
CviKI_1 RGCY 3 cut(s) 54, 296, 421
CviQI GTAC 1 cut(s) 70
DpnI GATC 2 cut(s) 81, 144
DpnII GATC 2 cut(s) 79, 142
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 197, 242
Eco88I CYCGRG 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 3 cut(s) 116, 133, 408
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 55
HapII CCGG 3 cut(s) 18, 260, 379
HinfI GANTC 1 cut(s) 345
HpaII CCGG 3 cut(s) 18, 260, 379
Hpy166II GTNNAC 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 158
Kzo9I GATC 2 cut(s) 79, 142
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 41
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 81, 144
MboI GATC 2 cut(s) 79, 142
MboII GAAGA 1 cut(s) 363
MluCI AATT 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 3 cut(s) 60, 160, 379
MspI CCGG 3 cut(s) 18, 260, 379
MspR9I CCNGG 2 cut(s) 19, 292
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 1 cut(s) 133
NciI CCSGG 1 cut(s) 19
NdeII GATC 2 cut(s) 79, 142
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 151
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 197, 242
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 2 cut(s) 79, 142
Sau96I GGNCC 2 cut(s) 197, 242
ScrFI CCNGG 2 cut(s) 19, 292
SetI ASST 4 cut(s) 56, 71, 161, 320
SfcI CTRYAG 1 cut(s) 277
Sfr274I CTCGAG 1 cut(s) 151
SinI GGWCC 2 cut(s) 197, 242
SlaI CTCGAG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 17, 290
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 286
TfiI GAWTC 1 cut(s) 345
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 197, 242
XhoI CTCGAG 1 cut(s) 151
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.