Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014997

Physical Location & Seq

Genomic Coordinates Reverse (-)

64526028 .. 64527073

Gene Structure 1046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG376600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATCAAAGCGCTCGCTTTTCTTCTGCTCCTAGTCGCCTTCGTCTCCACGCTTTCACAAGCCAAATTAAGCATCCTGCGACCCCAACCTGCCACAGGGTTCAACGTCAGCTGTGTACAGAGTGCCGGGAGTTGTTCTTATACGGTGGATATAACCACGAGCTGCTCATCAACGAGGTACACAAGGGATCAAATCAGTATCTCATTCGGGGATGTTTATGGCAACCAGATTTATGCTCCGCGACTAGACGATCCATCCTCGAGAACGTTTGAGAGTTGTTCTACGGACACATTTGAGATATATGGACCCTGTGCATACCAAATCTGCTATGTCTATCTTTACAGAACAGGACCAGATGGTTGGAAACCGGAGAGTGTGAAAATCTATAGTCATAATTCCAGGGCTGTTTCGTTCTACTACAATACCTTCATTCCCAGTGACATTTGGTATGGATTCAACTTGTGCCAGAATGCTTCCTCTTCACACCGGCAATCTGCTTATGGATGGTTTATATATGTTTTAGTTGGGCTTCTTGTGTCGCTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0031224 GO:0031225 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATS3

Protein Analysis

183

Amino Acids

20.48

Weight (kDa)

7.53

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	40 - 155	1.4e-52	Embryo-specific protein 3, (ATS3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62200
fragaria_vesca	FvH4_7g28400
malus_domestica	MD01G1187700.v1.1 MD07G1259800.v1.1
prunus_persica	Prupe.2G284100_v2.0.a1
pyrus_communis	pycom01g19960 pycom07g23320
rosa_chinensis	RchiOBHm_Chr1g0375361
rosa_laevigata	RLG00000026668
rosa_rugosa	Rorug01G0390500.1 Rorug01G0390600
rosa_samantha	Rh1AG401000 Rh1BG363300 Rh1CG376600 Rh1DG394100
rosa_wichuraiana	Rw1G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
AccII	CGCG	1 cut(s)	241
AciI	CCGC	1 cut(s)	239
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	2 cut(s)	195, 245
AfaI	GTAC	2 cut(s)	117, 179
AfeI	AGCGCT	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	103, 457
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	2 cut(s)	111, 162
AluI	AGCT	2 cut(s)	111, 162
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	195, 245
Ama87I	CYCGRG	1 cut(s)	259
Aor51HI	AGCGCT	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	305, 350
AsuC2I	CCSGG	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	305, 350
BauI	CACGAG	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	3 cut(s)	262, 350, 498
BciT130I	CCWGG	1 cut(s)	400
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	32, 245
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	127, 400
Bme18I	GGWCC	2 cut(s)	305, 350
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	305, 350
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	2 cut(s)	127, 400
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	4 cut(s)	72, 217, 254, 509
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	126, 368, 487
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	3, 187, 250
BspACI	CCGC	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	2 cut(s)	195, 245
BsrFI	RCCGGY	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	3 cut(s)	3, 187, 250
BssSI	CACGAG	1 cut(s)	157
Bst2BI	CACGAG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	484
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	4 cut(s)	72, 217, 254, 509
BstFNI	CGCG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	6, 190, 253
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	3 cut(s)	3, 187, 250
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	125, 398
BstSFI	CTRYAG	1 cut(s)	385
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	72, 217, 254, 509
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	305, 350
Csp6I	GTAC	2 cut(s)	116, 178
CviJI	RGCY	5 cut(s)	62, 111, 162, 404, 529
CviKI_1	RGCY	5 cut(s)	62, 111, 162, 404, 529
CviQI	GTAC	2 cut(s)	116, 178
DpnI	GATC	3 cut(s)	5, 189, 252
DpnII	GATC	3 cut(s)	3, 187, 250
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	305, 350
Eco47III	AGCGCT	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	4 cut(s)	59, 224, 241, 516
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	32, 245
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	14
HapII	CCGG	3 cut(s)	126, 368, 487
HhaI	GCGC	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	453
HpaII	CCGG	3 cut(s)	126, 368, 487
Hpy166II	GTNNAC	2 cut(s)	116, 180
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	2 cut(s)	116, 180
HpyAV	CCTTC	2 cut(s)	49, 436
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	105, 266
HpyCH4V	TGCA	1 cut(s)	314
HpySE526I	ACGT	2 cut(s)	105, 266
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 187, 250
LmnI	GCTCC	2 cut(s)	33, 241
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	32, 245
MaeII	ACGT	2 cut(s)	105, 266
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	3 cut(s)	5, 189, 252
MboI	GATC	3 cut(s)	3, 187, 250
MboII	GAAGA	2 cut(s)	14, 471
MluCI	AATT	2 cut(s)	65, 394
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	3 cut(s)	168, 268, 487
MseI	TTAA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	3 cut(s)	126, 368, 487
MspR9I	CCNGG	2 cut(s)	127, 400
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	241
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	3 cut(s)	3, 187, 250
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	259
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	453
PkrI	GCNGC	1 cut(s)	164
Psp1406I	AACGTT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	2 cut(s)	305, 350
PvuII	CAGCTG	1 cut(s)	111
RsaI	GTAC	2 cut(s)	117, 179
RsaNI	GTAC	2 cut(s)	116, 178
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	3 cut(s)	3, 187, 250
Sau96I	GGNCC	2 cut(s)	305, 350
ScrFI	CCNGG	2 cut(s)	127, 400
SetI	ASST	7 cut(s)	91, 108, 113, 164, 179, 269, 428
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	385
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	305, 350
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	2 cut(s)	65, 394
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	32, 245
StyD4I	CCNGG	2 cut(s)	125, 398
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	108, 269
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	65, 394
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	418
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	305, 350
XagI	CCTNNNNNAGG	1 cut(s)	93
XhoI	CTCGAG	1 cut(s)	259
XspI	CTAG	2 cut(s)	32, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.