Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014997

Physical Location & Seq

Genomic Coordinates Forward (+)

32602139 .. 32603614

Gene Structure 1476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1259800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCTTTTCTTTGACTCCTCCGCATACCGCAAGTCGTCGTCGCATTCTCTCTGCGCCAAATCATCAAACATGTTCGGAGCACCCTTTCTTCTTCTCCAAGTTTGCTTTCTCTTTACGCTCTCAGAAGCCAAGCTAAGCATCATACAGCCGGAAGCCGCCGCCAAGGACTTCAACGTCAGCAACATCCCGAACGCGGGGACTTGTTCTTATACGGCGATTATAACTACGAGCTGCTCCTCGACGAGGTACACGAGGGATCAGATCAGTATCTCCTTTGGGGATGCTTATGGCAATCAGATTTATGCGGCCCGACTGGACGATCCATCTTCGAGAACATTTGAACGGTGTTCTACAGACACATTCGATATATACGGCCCCTGTGCATACCAAATCTGCTACTTGTACCTCTACAGAACCGGACCGGATGGTTGGAAGCCTGAGAATGTGAAAATCTCCGGTCACAATTCCAGGGCAGTTACATTTACCTACAACACCTTCATTCCCAATGATCTTTGGTACGGGTTTAACTGGTGCAACGCCCCCCCCCTCTTCCGCCCAGAAATCTGTTCAGAGGTGGCCTGTGTTTGCCATAGCTGGGCTTCTTGTTTTTCTTATATTGTAAATCTTTGCATTTGCCCCTATGATCATAGCCTCTTACATTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0031224 GO:0031225 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATS3

Protein Analysis

223

Amino Acids

24.95

Weight (kDa)

6.17

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	64 - 178	6.4e-52	Embryo-specific protein 3, (ATS3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62200
fragaria_vesca	FvH4_7g28400
malus_domestica	MD01G1187700.v1.1 MD07G1259800.v1.1
prunus_persica	Prupe.2G284100_v2.0.a1
pyrus_communis	pycom01g19960 pycom07g23320
rosa_chinensis	RchiOBHm_Chr1g0375361
rosa_laevigata	RLG00000026668
rosa_rugosa	Rorug01G0390500.1 Rorug01G0390600
rosa_samantha	Rh1AG401000 Rh1BG363300 Rh1CG376600 Rh1DG394100
rosa_wichuraiana	Rw1G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AasI	GACNNNNNNGTC	1 cut(s)	173
AccII	CGCG	1 cut(s)	194
AciI	CCGC	7 cut(s)	21, 28, 156, 159, 194, 305, 553
AclWI	GGATC	2 cut(s)	264, 314
AfaI	GTAC	3 cut(s)	248, 404, 518
AfiI	CCNNNNNNNGG	4 cut(s)	193, 194, 243, 595
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	172, 341
AjnI	CCWGG	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	3 cut(s)	133, 231, 594
AluI	AGCT	3 cut(s)	133, 231, 594
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	2 cut(s)	264, 314
AoxI	GGCC	3 cut(s)	306, 373, 576
ApeKI	GCWGC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	3 cut(s)	307, 374, 419
AvaII	GGWCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	331, 419
BceAI	ACGGC	2 cut(s)	228, 388
BciT130I	CCWGG	1 cut(s)	469
BclI	TGATCA	1 cut(s)	643
BfmI	CTRYAG	2 cut(s)	351, 409
BisI	GCNGC	4 cut(s)	156, 159, 232, 306
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	4 cut(s)	157, 160, 233, 307
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	3 cut(s)	307, 374, 419
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	147, 271
Bpu1102I	GCTNAGC	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	162, 468
BsaWI	WCCGGW	3 cut(s)	416, 421, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 194, 243, 595
Bse1I	ACTGG	2 cut(s)	318, 533
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	2 cut(s)	162, 468
BseGI	GGATG	3 cut(s)	183, 286, 430
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	4 cut(s)	193, 194, 243, 595
BseMII	CTCAG	2 cut(s)	135, 429
BseNI	ACTGG	2 cut(s)	318, 533
BseRI	GAGGAG	2 cut(s)	7, 226
BseXI	GCAGC	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	3 cut(s)	308, 375, 578
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	4 cut(s)	149, 417, 422, 456
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	4 cut(s)	193, 194, 243, 595
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	308, 375, 578
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	5 cut(s)	256, 261, 319, 508, 643
Bsp1720I	GCTNAGC	1 cut(s)	134
BspACI	CCGC	7 cut(s)	21, 28, 156, 159, 194, 305, 553
BspANI	GGCC	3 cut(s)	308, 375, 578
BspCNI	CTCAG	2 cut(s)	134, 430
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	264, 314
BsrI	ACTGG	2 cut(s)	318, 533
BssECI	CCNNGG	2 cut(s)	162, 468
BssMI	GATC	5 cut(s)	256, 261, 319, 508, 643
BssSI	CACGAG	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	554
BstDEI	CTNAG	4 cut(s)	121, 134, 438, 666
BstENI	CCTNNNNNAGG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	183, 286, 430
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	5 cut(s)	259, 264, 322, 511, 646
BstMBI	GATC	5 cut(s)	256, 261, 319, 508, 643
BstNI	CCWGG	1 cut(s)	469
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	467
BstSFI	CTRYAG	2 cut(s)	351, 409
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	308, 375, 578
BtsCI	GGATG	3 cut(s)	183, 286, 430
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	307, 374, 419
CpoI	CGGWCCG	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	247, 403, 517
CspI	CGGWCCG	1 cut(s)	419
CviAII	CATG	1 cut(s)	70
CviQI	GTAC	3 cut(s)	247, 403, 517
DdeI	CTNAG	4 cut(s)	121, 134, 438, 666
DpnI	GATC	5 cut(s)	258, 263, 321, 510, 645
DpnII	GATC	5 cut(s)	256, 261, 319, 508, 643
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
EciI	GGCGGA	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	419
EcoNI	CCTNNNNNAGG	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	73
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	156, 159, 232, 306
FokI	GGATG	3 cut(s)	170, 293, 437
Fsp4HI	GCNGC	4 cut(s)	156, 159, 232, 306
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	4 cut(s)	156, 159, 232, 306
GsaI	CCCAGC	1 cut(s)	598
HaeIII	GGCC	3 cut(s)	308, 375, 578
HapII	CCGG	4 cut(s)	149, 417, 422, 456
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	4 cut(s)	149, 417, 422, 456
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	5 cut(s)	77, 124, 261, 297, 571
Hpy188III	TCNNGA	2 cut(s)	187, 330
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	3 cut(s)	40, 43, 244
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	383, 534, 630
HpyF3I	CTNAG	4 cut(s)	121, 134, 438, 666
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	5 cut(s)	256, 261, 319, 508, 643
LmnI	GCTCC	2 cut(s)	77, 239
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	2 cut(s)	147, 271
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	458, 475
MalI	GATC	5 cut(s)	258, 263, 321, 510, 645
MboI	GATC	5 cut(s)	256, 261, 319, 508, 643
MboII	GAAGA	4 cut(s)	80, 83, 318, 541
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	8 cut(s)	28, 237, 246, 247, 416, 557, 565, 662
MseI	TTAA	1 cut(s)	525
MspI	CCGG	4 cut(s)	149, 417, 422, 456
MspR9I	CCNGG	1 cut(s)	469
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	469
MvnI	CGCG	1 cut(s)	194
NdeII	GATC	5 cut(s)	256, 261, 319, 508, 643
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	73
PciI	ACATGT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PctI	GAATGC	1 cut(s)	43
PkrI	GCNGC	4 cut(s)	157, 160, 233, 307
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	3 cut(s)	307, 374, 419
RsaI	GTAC	3 cut(s)	248, 404, 518
RsaNI	GTAC	3 cut(s)	247, 403, 517
Rsr2I	CGGWCCG	1 cut(s)	419
RsrII	CGGWCCG	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	4 cut(s)	156, 159, 232, 306
Sau3AI	GATC	5 cut(s)	256, 261, 319, 508, 643
Sau96I	GGNCC	3 cut(s)	307, 374, 419
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	9 cut(s)	135, 177, 233, 248, 408, 488, 497, 576, 596
SfaNI	GCATC	2 cut(s)	147, 271
SfcI	CTRYAG	2 cut(s)	351, 409
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	7 cut(s)	21, 28, 156, 159, 194, 305, 553
StyD4I	CCNGG	1 cut(s)	467
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	239, 329, 363
TasI	AATT	1 cut(s)	463
TauI	GCSGC	3 cut(s)	158, 161, 308
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	241
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.