AT5G63090

lateral organ boundaries

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009917
Physical Location & Seq
Reverse (-)
25308516 .. 25311019
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63090.1

Sequence Viewer

Length: 561 bp
ATGGCGTCGTCATCAAACTCATACAACTCACCATGCGCGGCGTGCAAGTTTCTTCGCCGGAAATGCATGCCGGGATGCATATTCGCGCCATATTTTCCACCGGAGGAGCCACACAAATTCGCCAACGTCCACAAAATCTTTGGAGCAAGCAACGTCACGAAGCTCCTCAACGAGCTCCTCCCTCACCAACGTGAAGACGCAGTCAACTCCTTAGCCTATGAGGCCGAGGCACGTGTCCGTGACCCCGTCTATGGCTGCGTCGGAGCCATCTCTTATCTCCAGAGACAAGTCCATAGGCTTCAGAAGGAGCTCGACGCAGCTAATGCTGACTTGGCACATTATGGTTTGTCCACATCAGCCGCCGGAGCACCTGGCAACGTCGTGGACTTGGTTTTTCAGCCTCAGCCGCTTCCGTCGCAGCAACTGCCTCCCTTGAACCCGGTTTATAGGCTTTCGGGGGCAAGTCCGGTGATGAATCAGATGCCACGTGGCACCGGAGGGTCGTATGGGACTTTTCTTCCTTGGAACAATGGTCATGATCAGCAAGGAGGTAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009653 GO:0010199 GO:0032502 GO:0048646 GO:0048856 GO:0048859 GO:0090691
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

186

Amino Acids

20.23

Weight (kDa)

8.29

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 11 - 108 4.4e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63090 AT5G63090 AT5G63090 AT5G63090
fragaria_vesca FvH4_5g05970
malus_domestica MD06G1169000.v1.1 MD14G1174300.v1.1
prunus_persica Prupe.5G167800_v2.0.a1 Prupe.5G167800_v2.0.a1
pyrus_communis pycom06g15060 pycom14g14540
rosa_chinensis RchiOBHm_Chr7g0192861
rosa_laevigata RLG00000004318
rosa_multiflora Rmu_sc0002040.1_g000042
rosa_roxburghii Rroxscaffold_3G00262610
rosa_rugosa Rorug07G0005200
rosa_samantha Rh7AG130900 Rh7BG131700 Rh7CG135000 Rh7DG132800
rosa_wichuraiana Rw7G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccII CGCG 2 cut(s) 38, 86
AciI CCGC 3 cut(s) 38, 360, 407
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 284
AcvI CACGTG 2 cut(s) 233, 488
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 251
AflIII ACRYGT 2 cut(s) 232, 555
AgsI TTSAA 1 cut(s) 436
AjnI CCWGG 1 cut(s) 370
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 4 cut(s) 163, 175, 310, 320
AluI AGCT 4 cut(s) 163, 175, 310, 320
Alw21I GWGCWC 3 cut(s) 177, 312, 370
Alw26I GTCTC 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 424
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 255, 317, 418
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 2 cut(s) 38, 88
AsuC2I CCSGG 2 cut(s) 72, 440
AsuHPI GGTGA 3 cut(s) 21, 176, 481
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 2 cut(s) 177, 312
BbrPI CACGTG 2 cut(s) 233, 488
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 3 cut(s) 177, 312, 370
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 242, 329, 430
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 2 cut(s) 72, 440
BcoDI GTCTC 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 6 cut(s) 39, 256, 318, 360, 407, 419
BlsI GCNGC 6 cut(s) 40, 257, 319, 361, 408, 420
Bme1390I CCNGG 3 cut(s) 72, 372, 440
BmiI GGNNCC 3 cut(s) 108, 265, 493
BmrFI CCNGG 3 cut(s) 72, 372, 440
BmsI GCATC 2 cut(s) 65, 471
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 263
Bpu10I CCTNAGC 2 cut(s) 211, 402
BpuMI CCSGG 2 cut(s) 72, 440
BsaAI YACGTR 2 cut(s) 233, 488
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 225, 521
BsaWI WCCGGW 3 cut(s) 100, 466, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 225, 521
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 416
BseRI GAGGAG 3 cut(s) 119, 155, 167
BseXI GCAGC 3 cut(s) 242, 329, 430
Bsh1236I CGCG 2 cut(s) 38, 86
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 491
BsiHKAI GWGCWC 3 cut(s) 177, 312, 370
BsiSI CCGG 7 cut(s) 58, 71, 101, 363, 440, 467, 495
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 177, 312, 370
Bsp143I GATC 1 cut(s) 538
BspACI CCGC 3 cut(s) 38, 360, 407
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 2 cut(s) 38, 86
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 3 cut(s) 108, 265, 493
BspT107I GGYRCC 1 cut(s) 491
BssECI CCNNGG 2 cut(s) 225, 521
BssMI GATC 1 cut(s) 538
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 521
Bst2UI CCWGG 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 323, 424
BstBAI YACGTR 2 cut(s) 233, 488
BstC8I GCNNGC 3 cut(s) 43, 68, 148
BstDEI CTNAG 2 cut(s) 211, 402
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 2 cut(s) 38, 86
BstHHI GCGC 2 cut(s) 38, 88
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 9 cut(s) 42, 63, 221, 323, 332, 365, 406, 415, 424
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 2 cut(s) 70, 559
BstSCI CCNGG 3 cut(s) 70, 370, 438
BstUI CGCG 2 cut(s) 38, 86
BstV1I GCAGC 3 cut(s) 242, 329, 430
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 80
Cac8I GCNNGC 3 cut(s) 43, 68, 148
CaiI CAGNNNCTG 1 cut(s) 424
CciI TCATGA 1 cut(s) 535
CfoI GCGC 2 cut(s) 38, 88
CseI GACGC 3 cut(s) 206, 247, 323
CviAII CATG 4 cut(s) 33, 67, 536, 556
DdeI CTNAG 2 cut(s) 211, 402
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
Ecl136II GAGCTC 2 cut(s) 175, 310
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 2 cut(s) 177, 312
Eco53kI GAGCTC 2 cut(s) 175, 310
Eco57I CTGAAG 1 cut(s) 284
Eco72I CACGTG 2 cut(s) 233, 488
EcoICRI GAGCTC 2 cut(s) 175, 310
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 521
EcoT22I ATGCAT 2 cut(s) 68, 80
EcoT38I GRGCYC 2 cut(s) 177, 312
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 4 cut(s) 36, 70, 539, 559
FaqI GGGAC 1 cut(s) 523
FatI CATG 4 cut(s) 32, 66, 535, 555
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 6 cut(s) 39, 256, 318, 360, 407, 419
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 2 cut(s) 177, 312
Fsp4HI GCNGC 6 cut(s) 39, 256, 318, 360, 407, 419
GlaI GCGC 2 cut(s) 37, 87
GluI GCNGC 6 cut(s) 39, 256, 318, 360, 407, 419
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 224
HapII CCGG 7 cut(s) 58, 71, 101, 363, 440, 467, 495
HgaI GACGC 3 cut(s) 206, 247, 323
HhaI GCGC 2 cut(s) 38, 88
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 36, 70, 539, 559
Hin6I GCGC 2 cut(s) 36, 86
HinP1I GCGC 2 cut(s) 36, 86
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 475
HpaII CCGG 7 cut(s) 58, 71, 101, 363, 440, 467, 495
HphI GGTGA 3 cut(s) 21, 176, 481
Hpy166II GTNNAC 4 cut(s) 130, 205, 351, 385
Hpy188I TCNGA 3 cut(s) 263, 303, 480
Hpy188III TCNNGA 3 cut(s) 157, 280, 536
Hpy8I GTNNAC 4 cut(s) 130, 205, 351, 385
Hpy99I CGWCG 5 cut(s) 10, 263, 317, 383, 418
HpyAV CCTTC 1 cut(s) 298
HpyCH4IV ACGT 6 cut(s) 126, 153, 190, 232, 378, 487
HpyCH4V TGCA 3 cut(s) 45, 66, 78
HpyF10VI GCNNNNNNNGC 9 cut(s) 42, 63, 221, 323, 332, 365, 406, 415, 424
HpyF3I CTNAG 2 cut(s) 211, 402
HpySE526I ACGT 6 cut(s) 126, 153, 190, 232, 378, 487
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 36, 70, 539, 559
HspAI GCGC 2 cut(s) 36, 86
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 7 cut(s) 106, 143, 168, 180, 263, 307, 365
Lsp1109I GCAGC 3 cut(s) 242, 329, 430
LweI GCATC 2 cut(s) 65, 471
MaeII ACGT 6 cut(s) 126, 153, 190, 232, 378, 487
MaeIII GTNAC 3 cut(s) 154, 239, 551
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 3 cut(s) 44, 206, 509
MhlI GDGCHC 3 cut(s) 177, 312, 370
MluCI AATT 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 241
Mph1103I ATGCAT 2 cut(s) 68, 80
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 7 cut(s) 58, 71, 101, 363, 440, 467, 495
MspR9I CCNGG 3 cut(s) 72, 372, 440
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 2 cut(s) 38, 86
MwoI GCNNNNNNNGC 9 cut(s) 42, 63, 221, 323, 332, 365, 406, 415, 424
NciI CCSGG 2 cut(s) 72, 440
NdeII GATC 1 cut(s) 538
NlaIII CATG 4 cut(s) 36, 70, 539, 559
NlaIV GGNNCC 3 cut(s) 108, 265, 493
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 154, 239
NsiI ATGCAT 2 cut(s) 68, 80
NspI RCATGY 2 cut(s) 70, 559
OliI CACNNNNGTG 1 cut(s) 189
PaeI GCATGC 1 cut(s) 70
PagI TCATGA 1 cut(s) 535
PciI ACATGT 1 cut(s) 555
PfeI GAWTC 1 cut(s) 475
PflFI GACNNNGTC 2 cut(s) 200, 245
PkrI GCNGC 6 cut(s) 40, 257, 319, 361, 408, 420
PmaCI CACGTG 2 cut(s) 233, 488
PmlI CACGTG 2 cut(s) 233, 488
Ppu21I YACGTR 2 cut(s) 233, 488
PscI ACATGT 1 cut(s) 555
Psp124BI GAGCTC 2 cut(s) 177, 312
Psp6I CCWGG 1 cut(s) 370
PspCI CACGTG 2 cut(s) 233, 488
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 3 cut(s) 108, 265, 493
PstNI CAGNNNCTG 1 cut(s) 424
PsyI GACNNNGTC 2 cut(s) 200, 245
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 177, 312
SatI GCNGC 6 cut(s) 39, 256, 318, 360, 407, 419
Sau3AI GATC 1 cut(s) 538
ScrFI CCNGG 3 cut(s) 72, 372, 440
SduI GDGCHC 3 cut(s) 177, 312, 370
SfaNI GCATC 2 cut(s) 65, 471
SmiMI CAYNNNNRTG 1 cut(s) 189
SphI GCATGC 1 cut(s) 70
Sse9I AATT 1 cut(s) 116
SsiI CCGC 3 cut(s) 38, 360, 407
SstI GAGCTC 2 cut(s) 177, 312
StyD4I CCNGG 3 cut(s) 70, 370, 438
StyI CCWWGG 1 cut(s) 521
TaiI ACGT 6 cut(s) 129, 156, 193, 235, 381, 490
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 116
TauI GCSGC 3 cut(s) 41, 362, 409
TfiI GAWTC 1 cut(s) 475
TseFI GTSAC 2 cut(s) 154, 239
TseI GCWGC 3 cut(s) 255, 317, 418
Tsp45I GTSAC 2 cut(s) 154, 239
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 2 cut(s) 227, 402
Tth111I GACNNNGTC 2 cut(s) 200, 245
XapI RAATTY 1 cut(s) 116
XceI RCATGY 2 cut(s) 70, 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
Zsp2I ATGCAT 2 cut(s) 68, 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.