FvH4_5g05970

Protein LATERAL ORGAN

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009917
Physical Location & Seq
Reverse (-)
3510427 .. 3512788
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05970.t1

Sequence Viewer

Length: 582 bp
ATGGCTTCTTCATCCAGCTCCTACAACTCACCTTGTGCTGCCTGCAAGTTCTTGAGGCGCAAATGCATGCCCGGCTGCATTTTCGCCCCTTACTTCCCACCGGAGGATCCCCAAAAGTTCGCCAACGTCCACAAGATCTTCGGCGCCAGCAACGTCACCAAGCTCCTCAACGACCTCCTCCCCCACCAGCGGGAGGACGCCGTGAACTCCCTGGCCTATGAGGCCGAGGCACGCGTCAGGGACCCCGTCTACGGCTGCGTTGGAGCCATTTCCTTTCTCCAGAGACAGGTCCAGAGGCTCCAGAAGGAACTCGATGCTGCTAATGCCGATCTCATCCGCTATGCTTGCAATGAGATCATAGCGACACCGGGGGTGAATCCGGTACTCCAACAACAAATGACTCCTCGGAGAAGGTCTATTGATCATCACCAGTTTTATCATCAGCAAGGTGGTGCTACAATTCCTCCTCCTGCAGCTAATTTTCAGGTTCCTTATAATCTTCCATGGAATGTTGATCATCAAAATCGTACTTCCGGCGATCAGATCAATGAAGGAGGAGGAGGAGGAGAGGGTGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

194

Amino Acids

21.3

Weight (kDa)

7.65

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 11 - 108 6.5e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63090 AT5G63090 AT5G63090 AT5G63090
fragaria_vesca FvH4_5g05970
malus_domestica MD06G1169000.v1.1 MD14G1174300.v1.1
prunus_persica Prupe.5G167800_v2.0.a1 Prupe.5G167800_v2.0.a1
pyrus_communis pycom06g15060 pycom14g14540
rosa_chinensis RchiOBHm_Chr7g0192861
rosa_laevigata RLG00000004318
rosa_multiflora Rmu_sc0002040.1_g000042
rosa_roxburghii Rroxscaffold_3G00262610
rosa_rugosa Rorug07G0005200
rosa_samantha Rh7AG130900 Rh7BG131700 Rh7CG135000 Rh7DG132800
rosa_wichuraiana Rw7G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 234
AciI CCGC 2 cut(s) 190, 337
AclWI GGATC 2 cut(s) 101, 114
AcyI GRCGYC 2 cut(s) 144, 198
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 2 cut(s) 384, 529
AfiI CCNNNNNNNGG 6 cut(s) 103, 189, 190, 193, 251, 286
AflIII ACRYGT 1 cut(s) 232
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 3 cut(s) 18, 163, 476
AluI AGCT 3 cut(s) 18, 163, 476
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 2 cut(s) 101, 114
AoxI GGCC 2 cut(s) 213, 222
ApeKI GCWGC 5 cut(s) 38, 75, 255, 317, 473
AspLEI GCGC 2 cut(s) 60, 146
AspS9I GGNCC 2 cut(s) 241, 289
AsuC2I CCSGG 2 cut(s) 72, 369
AsuHPI GGTGA 4 cut(s) 21, 148, 385, 419
AvaII GGWCC 2 cut(s) 241, 289
BamHI GGATCC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 143
BbvI GCAGC 5 cut(s) 25, 62, 242, 304, 485
BceAI ACGGC 2 cut(s) 185, 268
BciT130I CCWGG 1 cut(s) 212
BclI TGATCA 2 cut(s) 421, 514
BcnI CCSGG 2 cut(s) 72, 369
BcoDI GTCTC 1 cut(s) 277
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 1 cut(s) 147
BglI GCCNNNNNGGC 1 cut(s) 221
BglII AGATCT 1 cut(s) 135
BisI GCNGC 5 cut(s) 39, 76, 256, 318, 474
BlsI GCNGC 5 cut(s) 40, 77, 257, 319, 475
Bme1390I CCNGG 3 cut(s) 72, 212, 369
Bme18I GGWCC 2 cut(s) 241, 289
BmgT120I GGNCC 2 cut(s) 241, 289
BmiI GGNNCC 7 cut(s) 108, 145, 242, 243, 265, 299, 489
BmrFI CCNGG 3 cut(s) 72, 212, 369
BmsI GCATC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 263, 284
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 2 cut(s) 72, 369
BsaHI GRCGYC 2 cut(s) 144, 198
BsaJI CCNNGG 5 cut(s) 210, 225, 368, 404, 503
BsaWI WCCGGW 2 cut(s) 100, 379
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 6 cut(s) 103, 189, 190, 193, 251, 286
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 5 cut(s) 210, 225, 368, 404, 503
BseGI GGATG 2 cut(s) 11, 333
BseLI CCNNNNNNNGG 6 cut(s) 103, 189, 190, 193, 251, 286
BseMI GCAATG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 8 cut(s) 155, 167, 393, 456, 570, 573, 576, 579
BseXI GCAGC 5 cut(s) 25, 62, 242, 304, 485
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 215, 224
BshNI GGYRCC 1 cut(s) 143
BsiSI CCGG 5 cut(s) 72, 101, 368, 380, 534
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 6 cut(s) 103, 189, 190, 193, 251, 286
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 2 cut(s) 215, 224
Bsp143I GATC 8 cut(s) 106, 135, 328, 354, 421, 514, 538, 543
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 2 cut(s) 190, 337
BspANI GGCC 2 cut(s) 215, 224
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 7 cut(s) 108, 145, 242, 243, 265, 299, 489
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 2 cut(s) 101, 114
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 5 cut(s) 210, 225, 368, 404, 503
BssMI GATC 8 cut(s) 106, 135, 328, 354, 421, 514, 538, 543
BssNI GRCGYC 2 cut(s) 144, 198
BssT1I CCWWGG 1 cut(s) 503
Bst2UI CCWGG 1 cut(s) 212
BstACI GRCGYC 2 cut(s) 144, 198
BstC8I GCNNGC 5 cut(s) 43, 68, 148, 232, 346
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 2 cut(s) 11, 333
BstFNI CGCG 1 cut(s) 234
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 60, 146
BstKTI GATC 8 cut(s) 109, 138, 331, 357, 424, 517, 541, 546
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 8 cut(s) 106, 135, 328, 354, 421, 514, 538, 543
BstMWI GCNNNNNNNGC 4 cut(s) 72, 221, 323, 345
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 3 cut(s) 70, 210, 367
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 5 cut(s) 25, 62, 242, 304, 485
BstX2I RGATCY 2 cut(s) 106, 135
BstYI RGATCY 2 cut(s) 106, 135
BsuRI GGCC 2 cut(s) 215, 224
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 2 cut(s) 11, 333
Cac8I GCNNGC 5 cut(s) 43, 68, 148, 232, 346
CfoI GCGC 2 cut(s) 60, 146
Cfr13I GGNCC 2 cut(s) 241, 289
CseI GACGC 2 cut(s) 206, 223
Csp6I GTAC 2 cut(s) 383, 528
CviAII CATG 2 cut(s) 67, 504
CviQI GTAC 2 cut(s) 383, 528
DinI GGCGCC 1 cut(s) 145
DpnI GATC 8 cut(s) 108, 137, 330, 356, 423, 516, 540, 545
DpnII GATC 8 cut(s) 106, 135, 328, 354, 421, 514, 538, 543
DraIII CACNNNGTG 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 241, 289
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 503
EcoT22I ATGCAT 1 cut(s) 68
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 2 cut(s) 70, 507
FaiI YATR 6 cut(s) 68, 219, 342, 359, 495, 505
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 66, 503
FauI CCCGC 1 cut(s) 183
FbaI TGATCA 2 cut(s) 421, 514
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 39, 76, 256, 318, 474
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 5 cut(s) 39, 76, 256, 318, 474
GlaI GCGC 2 cut(s) 59, 145
GluI GCNGC 5 cut(s) 39, 76, 256, 318, 474
GsuI CTGGAG 2 cut(s) 263, 284
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 215, 224
HapII CCGG 5 cut(s) 72, 101, 368, 380, 534
HgaI GACGC 2 cut(s) 206, 223
HhaI GCGC 2 cut(s) 60, 146
Hin1I GRCGYC 2 cut(s) 144, 198
Hin1II CATG 2 cut(s) 70, 507
Hin6I GCGC 2 cut(s) 58, 144
HinP1I GCGC 2 cut(s) 58, 144
HinfI GANTC 2 cut(s) 376, 400
HpaII CCGG 5 cut(s) 72, 101, 368, 380, 534
HphI GGTGA 4 cut(s) 21, 148, 385, 419
Hpy166II GTNNAC 3 cut(s) 130, 205, 250
Hpy188I TCNGA 2 cut(s) 408, 543
Hpy188III TCNNGA 4 cut(s) 52, 280, 292, 301
Hpy8I GTNNAC 3 cut(s) 130, 205, 250
HpyAV CCTTC 3 cut(s) 298, 405, 545
HpyCH4IV ACGT 2 cut(s) 126, 153
HpyCH4V TGCA 5 cut(s) 45, 66, 78, 348, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 221, 323, 345
HpySE526I ACGT 2 cut(s) 126, 153
Hsp92I GRCGYC 2 cut(s) 144, 198
Hsp92II CATG 2 cut(s) 70, 507
HspAI GCGC 2 cut(s) 58, 144
KasI GGCGCC 1 cut(s) 143
KflI GGGWCCC 1 cut(s) 241
Ksp22I TGATCA 2 cut(s) 421, 514
Kzo9I GATC 8 cut(s) 106, 135, 328, 354, 421, 514, 538, 543
LmnI GCTCC 4 cut(s) 23, 168, 263, 303
Lsp1109I GCAGC 5 cut(s) 25, 62, 242, 304, 485
LweI GCATC 1 cut(s) 304
MaeII ACGT 2 cut(s) 126, 153
MaeIII GTNAC 1 cut(s) 154
MalI GATC 8 cut(s) 108, 137, 330, 356, 423, 516, 540, 545
MboI GATC 8 cut(s) 106, 135, 328, 354, 421, 514, 538, 543
MboII GAAGA 2 cut(s) 130, 491
MflI RGATCY 2 cut(s) 106, 135
MluCI AATT 2 cut(s) 459, 478
MluI ACGCGT 1 cut(s) 232
Mly113I GGCGCC 1 cut(s) 144
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 2 cut(s) 241, 412
Mph1103I ATGCAT 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 5 cut(s) 72, 101, 368, 380, 534
MspR9I CCNGG 3 cut(s) 72, 212, 369
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 72, 221, 323, 345
NarI GGCGCC 1 cut(s) 144
NciI CCSGG 2 cut(s) 72, 369
NcoI CCATGG 1 cut(s) 503
NdeII GATC 8 cut(s) 106, 135, 328, 354, 421, 514, 538, 543
NlaIII CATG 2 cut(s) 70, 507
NlaIV GGNNCC 7 cut(s) 108, 145, 242, 243, 265, 299, 489
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 70
PaeI GCATGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 376
PflFI GACNNNGTC 1 cut(s) 245
PkrI GCNGC 5 cut(s) 40, 77, 257, 319, 475
PleI GAGTC 1 cut(s) 394
PluTI GGCGCC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 241
PsiI TTATAA 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 7 cut(s) 108, 145, 242, 243, 265, 299, 489
PspPI GGNCC 2 cut(s) 241, 289
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 2 cut(s) 106, 135
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 2 cut(s) 384, 529
RsaNI GTAC 2 cut(s) 383, 528
SatI GCNGC 5 cut(s) 39, 76, 256, 318, 474
Sau3AI GATC 8 cut(s) 106, 135, 328, 354, 421, 514, 538, 543
Sau96I GGNCC 2 cut(s) 241, 289
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 3 cut(s) 72, 212, 369
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 471
SfiI GGCCNNNNNGGCC 1 cut(s) 221
SfoI GGCGCC 1 cut(s) 145
SinI GGWCC 2 cut(s) 241, 289
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 70
Sse9I AATT 2 cut(s) 459, 478
SsiI CCGC 2 cut(s) 190, 337
SspDI GGCGCC 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 70, 210, 367
StyI CCWWGG 1 cut(s) 503
TaiI ACGT 2 cut(s) 129, 156
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 459, 478
TfiI GAWTC 1 cut(s) 376
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 5 cut(s) 38, 75, 255, 317, 473
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 564
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 241, 289
XceI RCATGY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.