Prupe.5G167800_v2.0.a1

Protein LATERAL ORGAN

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009917
Physical Location & Seq
Forward (+)
14475532 .. 14478272
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G167800.1

Sequence Viewer

Length: 579 bp
ATGGCATCCTCCAGCTCCTCCTATAACTCTCCCTGCGCTGCCTGCAAGTTTTTGAGGAGAAAATGCATGCCGGGCTGCATTTTCGCACCTTACTTCCCACCGGAGGAGCCCCAGAAATTCGCCAATGTTCACAAGATCTTTGGGGCCAGCAATGTGACCAAGCTTCTCAACGAGCTCCTGCCTCATCAGCGCGAGGACGCCGTGAACTCCCTGGCCTATGAGGCGGAGGCACGAGTCAGGGACCCGGTGTATGGGTGTGTTGGAGCCATTTCTTTCCTCCAAAGGCAGGTCCAGAGGCTCCAGAAGGAGCTTGACTCTGCCAATGCTGACCTCATCCGCTATGCCTGCAACGAAATCACAACAGCAACGGTGTTGCCAACAGGGCTAAATTCGGTGATTCAGCCGAATATGGCTCCTCGGAGAAGGTCGGTTGATCATCATCCTCATCACCAGTTTTACCAACAAATAAACAATACTAGTACTACTGGAGGAGCTTTCTCAGCTCCCTATCTTCCATGGAATGATATTCATAACCGGTCTGGGGACATTAACGAAGGAGGAGGAGATGGCAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

193

Amino Acids

21.31

Weight (kDa)

8.23

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63090 AT5G63090 AT5G63090 AT5G63090
fragaria_vesca FvH4_5g05970
malus_domestica MD06G1169000.v1.1 MD14G1174300.v1.1
prunus_persica Prupe.5G167800_v2.0.a1 Prupe.5G167800_v2.0.a1
pyrus_communis pycom06g15060 pycom14g14540
rosa_chinensis RchiOBHm_Chr7g0192861
rosa_laevigata RLG00000004318
rosa_multiflora Rmu_sc0002040.1_g000042
rosa_roxburghii Rroxscaffold_3G00262610
rosa_rugosa Rorug07G0005200
rosa_samantha Rh7AG130900 Rh7BG131700 Rh7CG135000 Rh7DG132800
rosa_wichuraiana Rw7G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccII CGCG 1 cut(s) 192
AciI CCGC 2 cut(s) 224, 337
AcsI RAATTY 2 cut(s) 116, 388
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 4 cut(s) 103, 251, 286, 541
AgeI ACCGGT 1 cut(s) 534
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 6 cut(s) 15, 163, 175, 310, 494, 503
AluI AGCT 6 cut(s) 15, 163, 175, 310, 494, 503
Alw21I GWGCWC 1 cut(s) 177
AoxI GGCC 2 cut(s) 144, 213
ApeKI GCWGC 2 cut(s) 38, 75
ApoI RAATTY 2 cut(s) 116, 388
AsiGI ACCGGT 1 cut(s) 534
AspLEI GCGC 2 cut(s) 38, 192
AspS9I GGNCC 3 cut(s) 144, 241, 289
AsuC2I CCSGG 2 cut(s) 72, 245
AsuHPI GGTGA 2 cut(s) 406, 440
AvaII GGWCC 2 cut(s) 241, 289
BanII GRGCYC 2 cut(s) 111, 177
BauI CACGAG 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 25, 62
BccI CCATC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 212
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 2 cut(s) 72, 245
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 277
BglI GCCNNNNNGGC 2 cut(s) 221, 382
BglII AGATCT 1 cut(s) 135
BisI GCNGC 2 cut(s) 39, 76
BlsI GCNGC 2 cut(s) 40, 77
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 3 cut(s) 72, 212, 245
Bme18I GGWCC 2 cut(s) 241, 289
BmgT120I GGNCC 3 cut(s) 144, 241, 289
BmiI GGNNCC 7 cut(s) 108, 145, 242, 243, 265, 299, 414
BmrFI CCNGG 3 cut(s) 72, 212, 245
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 2 cut(s) 284, 507
BpuMI CCSGG 2 cut(s) 72, 245
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 210, 416, 515
BsaWI WCCGGW 2 cut(s) 100, 534
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 251, 286, 541
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 2 cut(s) 451, 490
Bse3DI GCAATG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 210, 416, 515
BseGI GGATG 3 cut(s) 5, 333, 439
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 4 cut(s) 103, 251, 286, 541
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 451, 490
BseRI GAGGAG 7 cut(s) 7, 70, 119, 405, 504, 573, 576
BseXI GCAGC 2 cut(s) 25, 62
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 146, 215
BshTI ACCGGT 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 4 cut(s) 71, 101, 245, 535
BslFI GGGAC 2 cut(s) 254, 557
BslI CCNNNNNNNGG 4 cut(s) 103, 251, 286, 541
BsmFI GGGAC 2 cut(s) 254, 557
BsnI GGCC 2 cut(s) 146, 215
Bsp1286I GDGCHC 2 cut(s) 111, 177
Bsp143I GATC 2 cut(s) 135, 433
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 2 cut(s) 224, 337
BspANI GGCC 2 cut(s) 146, 215
BspCNI CTCAG 1 cut(s) 512
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 7 cut(s) 108, 145, 242, 243, 265, 299, 414
BspMI ACCTGC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 534
BsrI ACTGG 2 cut(s) 451, 490
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 3 cut(s) 210, 416, 515
BssMI GATC 2 cut(s) 135, 433
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 515
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 370
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 4 cut(s) 43, 68, 148, 346
BstDEI CTNAG 1 cut(s) 499
BstDSI CCRYGG 1 cut(s) 515
BstF5I GGATG 3 cut(s) 5, 333, 439
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 2 cut(s) 38, 192
BstKTI GATC 2 cut(s) 138, 436
BstMBI GATC 2 cut(s) 135, 433
BstMWI GCNNNNNNNGC 7 cut(s) 42, 72, 187, 221, 345, 382, 500
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 3 cut(s) 70, 210, 243
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 25, 62
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 2 cut(s) 146, 215
BtgI CCRYGG 1 cut(s) 515
BtsCI GGATG 3 cut(s) 5, 333, 439
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 4 cut(s) 43, 68, 148, 346
CfoI GCGC 2 cut(s) 38, 192
Cfr10I RCCGGY 1 cut(s) 534
Cfr13I GGNCC 3 cut(s) 144, 241, 289
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 534
CviAII CATG 2 cut(s) 67, 516
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 1 cut(s) 499
DpnI GATC 2 cut(s) 137, 435
DpnII GATC 2 cut(s) 135, 433
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 515
Eco24I GRGCYC 2 cut(s) 111, 177
Eco47I GGWCC 2 cut(s) 241, 289
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 2 cut(s) 111, 177
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 2 cut(s) 70, 519
FaiI YATR 8 cut(s) 24, 68, 219, 252, 342, 410, 517, 531
FaqI GGGAC 2 cut(s) 254, 557
FatI CATG 2 cut(s) 66, 515
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 39, 76
FokI GGATG 2 cut(s) 320, 426
FriOI GRGCYC 2 cut(s) 111, 177
Fsp4HI GCNGC 2 cut(s) 39, 76
FspBI CTAG 1 cut(s) 477
GlaI GCGC 2 cut(s) 37, 191
GluI GCNGC 2 cut(s) 39, 76
GsuI CTGGAG 2 cut(s) 284, 507
HaeIII GGCC 2 cut(s) 146, 215
HapII CCGG 4 cut(s) 71, 101, 245, 535
HgaI GACGC 1 cut(s) 206
HhaI GCGC 2 cut(s) 38, 192
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 2 cut(s) 70, 519
Hin6I GCGC 2 cut(s) 36, 190
HinP1I GCGC 2 cut(s) 36, 190
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 3 cut(s) 234, 314, 397
HpaII CCGG 4 cut(s) 71, 101, 245, 535
HphI GGTGA 2 cut(s) 406, 440
Hpy166II GTNNAC 2 cut(s) 130, 205
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 2 cut(s) 292, 301
Hpy8I GTNNAC 2 cut(s) 130, 205
HpyAV CCTTC 3 cut(s) 298, 417, 548
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 45, 66, 78, 348
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 72, 187, 221, 345, 382, 500
HpyF3I CTNAG 1 cut(s) 499
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 2 cut(s) 70, 519
HspAI GCGC 2 cut(s) 36, 190
KflI GGGWCCC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 2 cut(s) 135, 433
LmnI GCTCC 9 cut(s) 20, 106, 180, 263, 303, 307, 418, 491, 508
Lsp1109I GCAGC 2 cut(s) 25, 62
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 137, 435
MboI GATC 2 cut(s) 135, 433
MboII GAAGA 1 cut(s) 503
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 111, 177
MluCI AATT 2 cut(s) 116, 388
MlyI GAGTC 2 cut(s) 243, 308
MmeI TCCRAC 1 cut(s) 241
Mph1103I ATGCAT 1 cut(s) 68
MseI TTAA 1 cut(s) 549
MspI CCGG 4 cut(s) 71, 101, 245, 535
MspR9I CCNGG 3 cut(s) 72, 212, 245
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 7 cut(s) 42, 72, 187, 221, 345, 382, 500
NciI CCSGG 2 cut(s) 72, 245
NcoI CCATGG 1 cut(s) 515
NdeII GATC 2 cut(s) 135, 433
NlaIII CATG 2 cut(s) 70, 519
NlaIV GGNNCC 7 cut(s) 108, 145, 242, 243, 265, 299, 414
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 70
PaeI GCATGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 397
PinAI ACCGGT 1 cut(s) 534
PkrI GCNGC 2 cut(s) 40, 77
PleI GAGTC 2 cut(s) 242, 308
PpsI GAGTC 2 cut(s) 242, 308
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 7 cut(s) 108, 145, 242, 243, 265, 299, 414
PspPI GGNCC 3 cut(s) 144, 241, 289
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 1 cut(s) 135
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 2 cut(s) 39, 76
Sau3AI GATC 2 cut(s) 135, 433
Sau96I GGNCC 3 cut(s) 144, 241, 289
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 2 cut(s) 243, 308
ScrFI CCNGG 3 cut(s) 72, 212, 245
SduI GDGCHC 2 cut(s) 111, 177
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 2 cut(s) 241, 289
SpeI ACTAGT 1 cut(s) 476
SphI GCATGC 1 cut(s) 70
Sse9I AATT 2 cut(s) 116, 388
SsiI CCGC 2 cut(s) 224, 337
SspMI CTAG 1 cut(s) 477
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 70, 210, 243
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 1 cut(s) 370
TasI AATT 2 cut(s) 116, 388
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 38, 75
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 241, 289
XapI RAATTY 2 cut(s) 116, 388
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 477
ZrmI AGTACT 1 cut(s) 481
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.