pycom06g15060

Protein LATERAL ORGAN

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009917
Physical Location & Seq
Forward (+)
19656473 .. 19657075
603 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15060.1

Sequence Viewer

Length: 603 bp
ATGGCATCCTCCAGCTCCTCCTATAACTCTCCATGCGCTGCCTGCAAGTTCTTGAGAAGGAAATGCATGCCGGGCTGCATTTTCGCACCGTATTTCCCACCAGAGGAGCCCCAAAAGTTTGCAAACGTCCACAAGATCTTCGGGGCAAGCAATGTCACCAAACTTCTAAACGAGCTCCTGCCTCACCAGCGTGAGGATGCTGTGAACTCCCTGGCGTATGAGGCCGAGGCACGTGTCAGGGACCCGGTCTATGGCTGTGTTGGTGCCATTTCTTTCCTCCAACGACAGGTCCAGAGGCTCCAAAAGGAGCTCGATGCCGCTAATGCTGATCTCATCCGCTATGCCTGTAATGAACTCACAACAGCTGTGTTGCCTCCTCCTCCTACTGCATCAATGGCCGGGGTAAATTCAGTAATTCAGCCGAACATGGCTCCTCAGAGAAGGTTGGTTGATCATCCTTCTCATCATCATCAGTATTACCAACAAACTAGTACAACTACAACTAGTAATGCTCCTGGAGTCGCTTTCCCAGTACTTTATCTTCCGTGGAATGAAGGAGGAGGAGCAGGTAGTGGTGGTGGAGGAGGAGACGGCAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

201

Amino Acids

21.63

Weight (kDa)

8.22

Isoelectric Point (pI)

59.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 11 - 108 4.4e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63090 AT5G63090 AT5G63090 AT5G63090
fragaria_vesca FvH4_5g05970
malus_domestica MD06G1169000.v1.1 MD14G1174300.v1.1
prunus_persica Prupe.5G167800_v2.0.a1 Prupe.5G167800_v2.0.a1
pyrus_communis pycom06g15060 pycom14g14540
rosa_chinensis RchiOBHm_Chr7g0192861
rosa_laevigata RLG00000004318
rosa_multiflora Rmu_sc0002040.1_g000042
rosa_roxburghii Rroxscaffold_3G00262610
rosa_rugosa Rorug07G0005200
rosa_samantha Rh7AG130900 Rh7BG131700 Rh7CG135000 Rh7DG132800
rosa_wichuraiana Rw7G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 2 cut(s) 318, 337
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 1 cut(s) 406
AcvI CACGTG 1 cut(s) 233
AfaI GTAC 2 cut(s) 493, 534
AfiI CCNNNNNNNGG 4 cut(s) 103, 193, 251, 286
AflIII ACRYGT 1 cut(s) 232
AhlI ACTAGT 2 cut(s) 488, 503
AjnI CCWGG 2 cut(s) 210, 514
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 4 cut(s) 15, 175, 310, 365
AluI AGCT 4 cut(s) 15, 175, 310, 365
Alw21I GWGCWC 2 cut(s) 177, 312
Alw26I GTCTC 1 cut(s) 582
AoxI GGCC 2 cut(s) 222, 396
ApeKI GCWGC 2 cut(s) 38, 75
ApoI RAATTY 1 cut(s) 406
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 241, 289
AsuC2I CCSGG 3 cut(s) 72, 245, 400
AsuHPI GGTGA 2 cut(s) 148, 176
AvaII GGWCC 2 cut(s) 241, 289
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 3 cut(s) 111, 177, 312
BarI GAAGNNNNNNTAC 2 cut(s) 525, 557
BbrPI CACGTG 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 177, 312
BbvI GCAGC 2 cut(s) 25, 62
BciT130I CCWGG 2 cut(s) 212, 516
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 3 cut(s) 72, 245, 400
BcoDI GTCTC 1 cut(s) 582
BcuI ACTAGT 2 cut(s) 488, 503
BfaI CTAG 2 cut(s) 489, 504
BfuAI ACCTGC 1 cut(s) 557
BglII AGATCT 1 cut(s) 135
BisI GCNGC 3 cut(s) 39, 76, 318
BlsI GCNGC 3 cut(s) 40, 77, 319
BmcAI AGTACT 1 cut(s) 534
Bme1390I CCNGG 5 cut(s) 72, 212, 245, 400, 516
Bme18I GGWCC 2 cut(s) 241, 289
BmgT120I GGNCC 2 cut(s) 241, 289
BmiI GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
BmrFI CCNGG 5 cut(s) 72, 212, 245, 400, 516
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 4 cut(s) 14, 187, 304, 398
BmuI ACTGGG 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 3 cut(s) 72, 245, 400
BsaAI YACGTR 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 210, 225, 399, 545
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 193, 251, 286
Bse1I ACTGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 212, 516
BseDI CCNNGG 4 cut(s) 210, 225, 399, 545
BseGI GGATG 4 cut(s) 5, 202, 333, 454
BseLI CCNNNNNNNGG 4 cut(s) 103, 193, 251, 286
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 530
BseRI GAGGAG 9 cut(s) 7, 119, 366, 369, 423, 573, 576, 597, 600
BseXI GCAGC 2 cut(s) 25, 62
BshFI GGCC 2 cut(s) 224, 398
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 177, 312
BsiSI CCGG 3 cut(s) 71, 245, 399
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 4 cut(s) 103, 193, 251, 286
BsmAI GTCTC 1 cut(s) 582
BsmBI CGTCTC 1 cut(s) 582
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 2 cut(s) 224, 398
Bsp1286I GDGCHC 3 cut(s) 111, 177, 312
Bsp143I GATC 3 cut(s) 135, 328, 451
BspACI CCGC 2 cut(s) 318, 337
BspANI GGCC 2 cut(s) 224, 398
BspCNI CTCAG 1 cut(s) 448
BspLI GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
BspMI ACCTGC 1 cut(s) 557
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 210, 225, 399, 545
BssMI GATC 3 cut(s) 135, 328, 451
Bst2UI CCWGG 2 cut(s) 212, 516
Bst4CI ACNGT 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 43, 68, 148
BstDEI CTNAG 1 cut(s) 435
BstDSI CCRYGG 1 cut(s) 545
BstF5I GGATG 4 cut(s) 5, 202, 333, 454
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 3 cut(s) 138, 331, 454
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 3 cut(s) 135, 328, 451
BstMWI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
BstNI CCWGG 2 cut(s) 212, 516
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 5 cut(s) 70, 210, 243, 398, 514
BstV1I GCAGC 2 cut(s) 25, 62
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 2 cut(s) 224, 398
BtgI CCRYGG 1 cut(s) 545
BtsCI GGATG 4 cut(s) 5, 202, 333, 454
BveI ACCTGC 1 cut(s) 557
Cac8I GCNNGC 3 cut(s) 43, 68, 148
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 241, 289
Csp6I GTAC 2 cut(s) 492, 533
CviAII CATG 3 cut(s) 33, 67, 427
CviQI GTAC 2 cut(s) 492, 533
DdeI CTNAG 1 cut(s) 435
DpnI GATC 3 cut(s) 137, 330, 453
DpnII GATC 3 cut(s) 135, 328, 451
EaeI YGGCCR 1 cut(s) 396
Ecl136II GAGCTC 2 cut(s) 175, 310
Eco24I GRGCYC 3 cut(s) 111, 177, 312
Eco47I GGWCC 2 cut(s) 241, 289
Eco53kI GAGCTC 2 cut(s) 175, 310
Eco72I CACGTG 1 cut(s) 233
EcoICRI GAGCTC 2 cut(s) 175, 310
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 210, 514
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 3 cut(s) 111, 177, 312
Esp3I CGTCTC 1 cut(s) 582
FaeI CATG 3 cut(s) 36, 70, 430
FaiI YATR 7 cut(s) 24, 34, 68, 219, 252, 342, 428
FaqI GGGAC 1 cut(s) 254
FatI CATG 3 cut(s) 32, 66, 426
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 39, 76, 318
FokI GGATG 3 cut(s) 209, 320, 441
FriOI GRGCYC 3 cut(s) 111, 177, 312
Fsp4HI GCNGC 3 cut(s) 39, 76, 318
FspBI CTAG 2 cut(s) 489, 504
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 76, 318
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 224, 398
HapII CCGG 3 cut(s) 71, 245, 399
HhaI GCGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 36, 70, 430
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 1 cut(s) 519
HpaII CCGG 3 cut(s) 71, 245, 399
HphI GGTGA 2 cut(s) 148, 176
Hpy166II GTNNAC 2 cut(s) 130, 205
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 2 cut(s) 52, 292
Hpy8I GTNNAC 2 cut(s) 130, 205
HpyAV CCTTC 4 cut(s) 51, 435, 468, 548
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 2 cut(s) 126, 232
HpyCH4V TGCA 5 cut(s) 45, 66, 78, 122, 389
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 2 cut(s) 126, 232
Hsp92II CATG 3 cut(s) 36, 70, 430
HspAI GCGC 1 cut(s) 36
KflI GGGWCCC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 3 cut(s) 135, 328, 451
LmnI GCTCC 8 cut(s) 20, 106, 180, 303, 307, 436, 517, 563
Lsp1109I GCAGC 2 cut(s) 25, 62
LweI GCATC 4 cut(s) 14, 187, 304, 398
MaeI CTAG 2 cut(s) 489, 504
MaeII ACGT 2 cut(s) 126, 232
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 137, 330, 453
MboI GATC 3 cut(s) 135, 328, 451
MboII GAAGA 2 cut(s) 130, 533
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 3 cut(s) 111, 177, 312
MluCI AATT 2 cut(s) 406, 414
MlyI GAGTC 1 cut(s) 528
MmeI TCCRAC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 3 cut(s) 71, 245, 399
MspR9I CCNGG 5 cut(s) 72, 212, 245, 400, 516
MvaI CCWGG 2 cut(s) 212, 516
MwoI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
NciI CCSGG 3 cut(s) 72, 245, 400
NdeII GATC 3 cut(s) 135, 328, 451
NlaIII CATG 3 cut(s) 36, 70, 430
NlaIV GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 189
PaeI GCATGC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 3 cut(s) 40, 77, 319
PleI GAGTC 1 cut(s) 527
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
PpsI GAGTC 1 cut(s) 527
Ppu21I YACGTR 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 2 cut(s) 177, 312
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 210, 514
PspCI CACGTG 1 cut(s) 233
PspGI CCWGG 2 cut(s) 210, 514
PspN4I GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
PspPI GGNCC 2 cut(s) 241, 289
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 2 cut(s) 493, 534
RsaNI GTAC 2 cut(s) 492, 533
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 177, 312
SatI GCNGC 3 cut(s) 39, 76, 318
Sau3AI GATC 3 cut(s) 135, 328, 451
Sau96I GGNCC 2 cut(s) 241, 289
ScaI AGTACT 1 cut(s) 534
SchI GAGTC 1 cut(s) 528
ScrFI CCNGG 5 cut(s) 72, 212, 245, 400, 516
SduI GDGCHC 3 cut(s) 111, 177, 312
SetI ASST 9 cut(s) 17, 129, 177, 235, 291, 312, 367, 446, 571
SfaNI GCATC 4 cut(s) 14, 187, 304, 398
SinI GGWCC 2 cut(s) 241, 289
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SpeI ACTAGT 2 cut(s) 488, 503
SphI GCATGC 1 cut(s) 70
Sse9I AATT 2 cut(s) 406, 414
SsiI CCGC 2 cut(s) 318, 337
SspMI CTAG 2 cut(s) 489, 504
SstI GAGCTC 2 cut(s) 177, 312
StyD4I CCNGG 5 cut(s) 70, 210, 243, 398, 514
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 2 cut(s) 129, 235
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 406, 414
TatI WGTACW 2 cut(s) 491, 532
TauI GCSGC 1 cut(s) 320
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 38, 75
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 366, 567
TspGWI ACGGA 1 cut(s) 534
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 241, 289
XapI RAATTY 1 cut(s) 406
XceI RCATGY 1 cut(s) 70
XspI CTAG 2 cut(s) 489, 504
ZrmI AGTACT 1 cut(s) 534
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.