pycom14g14540

Protein LATERAL ORGAN

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0009917
Physical Location & Seq
Forward (+)
17283977 .. 17284579
603 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g14540.1

Sequence Viewer

Length: 603 bp
ATGGCATCCTCCAGCTCCTCCTATAACTCTCCATGCGCTGCCTGCAAGTTCTTGAGAAGGAAATGCATGCCGGGCTGCATTTTTGCACCGTATTTCCCACCAGAGGAGCCCCAAAAATTTGCAAACGTCCACAAGATCTTCGGGGCTAGCAATGTCACCAAACTTCTTAACGAGCTCCTGCCTCACCAGCGTGAGGACGCCGTGAATTCCCTGGCCTATGAGGCCGAGGCACGTGTCAGGGACCCGGTCTATGGCTGTGTTGGTGCCATTTCTTTCCTCCAAAGACAGGTCCAGAGGCTCCAGAAGGAGCTCGATGCCGCTAATGCTGATCTTATTCACTATGCCTGCAATGAACTCACAACAACTGTGTTGCCTCCTCCTACTACTGCATCAATGGCCGGGACATATTCGGTAATTCAGCCGAATATGGATCCTCAGAGAAGGTTGGTTGATCAACCTCATCATCATCATCAGTATTACCAACAAACTAATACCACAACTAGTAATGCTCCTGGAGTCGGTTTCCCAGTACCTTATCTTCCATGGAATGGAGGAGGAGGAGGAGGAGGTAGTGGTGATGGAGGAGGAGAGGGCAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

7.03

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 11 - 108 4.4e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63090 AT5G63090 AT5G63090 AT5G63090
fragaria_vesca FvH4_5g05970
malus_domestica MD06G1169000.v1.1 MD14G1174300.v1.1
prunus_persica Prupe.5G167800_v2.0.a1 Prupe.5G167800_v2.0.a1
pyrus_communis pycom06g15060 pycom14g14540
rosa_chinensis RchiOBHm_Chr7g0192861
rosa_laevigata RLG00000004318
rosa_multiflora Rmu_sc0002040.1_g000042
rosa_roxburghii Rroxscaffold_3G00262610
rosa_rugosa Rorug07G0005200
rosa_samantha Rh7AG130900 Rh7BG131700 Rh7CG135000 Rh7DG132800
rosa_wichuraiana Rw7G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 548
AciI CCGC 1 cut(s) 318
AclWI GGATC 2 cut(s) 425, 438
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 2 cut(s) 116, 205
AcvI CACGTG 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 6 cut(s) 103, 193, 251, 286, 518, 548
AflIII ACRYGT 1 cut(s) 232
AhlI ACTAGT 1 cut(s) 500
AjnI CCWGG 2 cut(s) 210, 511
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 3 cut(s) 15, 175, 310
AluI AGCT 3 cut(s) 15, 175, 310
Alw21I GWGCWC 2 cut(s) 177, 312
AlwI GGATC 2 cut(s) 425, 438
AoxI GGCC 3 cut(s) 213, 222, 396
ApeKI GCWGC 2 cut(s) 38, 75
ApoI RAATTY 2 cut(s) 116, 205
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 241, 289
AsuC2I CCSGG 3 cut(s) 72, 245, 400
AsuHPI GGTGA 3 cut(s) 148, 176, 587
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 2 cut(s) 241, 289
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 3 cut(s) 111, 177, 312
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BbrPI CACGTG 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 177, 312
BbvI GCAGC 2 cut(s) 25, 62
BccI CCATC 1 cut(s) 572
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 212, 513
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 3 cut(s) 72, 245, 400
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 2 cut(s) 147, 501
BglI GCCNNNNNGGC 1 cut(s) 221
BglII AGATCT 1 cut(s) 135
BisI GCNGC 3 cut(s) 39, 76, 318
BlsI GCNGC 3 cut(s) 40, 77, 319
Bme1390I CCNGG 5 cut(s) 72, 212, 245, 400, 513
Bme18I GGWCC 2 cut(s) 241, 289
BmgT120I GGNCC 2 cut(s) 241, 289
BmiI GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
BmrFI CCNGG 5 cut(s) 72, 212, 245, 400, 513
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 3 cut(s) 14, 304, 398
BmtI GCTAGC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 521
BpmI CTGGAG 2 cut(s) 284, 534
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 3 cut(s) 72, 245, 400
BsaAI YACGTR 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 210, 225, 542
Bsc4I CCNNNNNNNGG 6 cut(s) 103, 193, 251, 286, 518, 548
Bse1I ACTGG 1 cut(s) 527
Bse3DI GCAATG 2 cut(s) 157, 355
BseBI CCWGG 2 cut(s) 212, 513
BseDI CCNNGG 3 cut(s) 210, 225, 542
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 6 cut(s) 103, 193, 251, 286, 518, 548
BseMI GCAATG 2 cut(s) 157, 355
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 25, 62
BshFI GGCC 3 cut(s) 215, 224, 398
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 177, 312
BsiSI CCGG 3 cut(s) 71, 245, 399
BslFI GGGAC 2 cut(s) 254, 415
BslI CCNNNNNNNGG 6 cut(s) 103, 193, 251, 286, 518, 548
BsmFI GGGAC 2 cut(s) 254, 415
BsnI GGCC 3 cut(s) 215, 224, 398
Bsp1286I GDGCHC 3 cut(s) 111, 177, 312
Bsp143I GATC 4 cut(s) 135, 328, 430, 451
Bsp19I CCATGG 1 cut(s) 542
BspACI CCGC 1 cut(s) 318
BspANI GGCC 3 cut(s) 215, 224, 398
BspCNI CTCAG 1 cut(s) 448
BspLI GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 2 cut(s) 425, 438
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 157, 355
BsrI ACTGG 1 cut(s) 527
BssECI CCNNGG 3 cut(s) 210, 225, 542
BssMI GATC 4 cut(s) 135, 328, 430, 451
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 542
Bst2UI CCWGG 2 cut(s) 212, 513
Bst4CI ACNGT 2 cut(s) 90, 367
BstACI GRCGYC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 4 cut(s) 43, 68, 148, 346
BstDEI CTNAG 1 cut(s) 435
BstDSI CCRYGG 1 cut(s) 542
BstF5I GGATG 1 cut(s) 5
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 4 cut(s) 138, 331, 433, 454
BstMBI GATC 4 cut(s) 135, 328, 430, 451
BstMWI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
BstNI CCWGG 2 cut(s) 212, 513
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 5 cut(s) 70, 210, 243, 398, 511
BstV1I GCAGC 2 cut(s) 25, 62
BstX2I RGATCY 2 cut(s) 135, 430
BstYI RGATCY 2 cut(s) 135, 430
BsuRI GGCC 3 cut(s) 215, 224, 398
BtgI CCRYGG 1 cut(s) 542
BtsCI GGATG 1 cut(s) 5
Cac8I GCNNGC 4 cut(s) 43, 68, 148, 346
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 241, 289
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 530
CviAII CATG 3 cut(s) 33, 67, 543
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 1 cut(s) 435
DpnI GATC 4 cut(s) 137, 330, 432, 453
DpnII GATC 4 cut(s) 135, 328, 430, 451
EaeI YGGCCR 1 cut(s) 396
Ecl136II GAGCTC 2 cut(s) 175, 310
Eco130I CCWWGG 1 cut(s) 542
Eco24I GRGCYC 3 cut(s) 111, 177, 312
Eco47I GGWCC 2 cut(s) 241, 289
Eco53kI GAGCTC 2 cut(s) 175, 310
Eco72I CACGTG 1 cut(s) 233
EcoICRI GAGCTC 2 cut(s) 175, 310
EcoO109I RGGNCCY 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 210, 511
EcoT14I CCWWGG 1 cut(s) 542
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 3 cut(s) 111, 177, 312
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 3 cut(s) 36, 70, 546
FaiI YATR 9 cut(s) 24, 34, 68, 219, 252, 342, 406, 428, 544
FaqI GGGAC 2 cut(s) 254, 415
FatI CATG 3 cut(s) 32, 66, 542
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 39, 76, 318
FriOI GRGCYC 3 cut(s) 111, 177, 312
Fsp4HI GCNGC 3 cut(s) 39, 76, 318
FspBI CTAG 2 cut(s) 147, 501
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 76, 318
GsuI CTGGAG 2 cut(s) 284, 534
HaeIII GGCC 3 cut(s) 215, 224, 398
HapII CCGG 3 cut(s) 71, 245, 399
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 36, 70, 546
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 1 cut(s) 516
HpaII CCGG 3 cut(s) 71, 245, 399
HphI GGTGA 3 cut(s) 148, 176, 587
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 3 cut(s) 52, 292, 301
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 3 cut(s) 51, 298, 435
HpyCH4III ACNGT 2 cut(s) 90, 367
HpyCH4IV ACGT 2 cut(s) 126, 232
HpyCH4V TGCA 7 cut(s) 45, 66, 78, 86, 122, 348, 389
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 2 cut(s) 126, 232
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 36, 70, 546
HspAI GCGC 1 cut(s) 36
KflI GGGWCCC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 135, 328, 430, 451
LmnI GCTCC 6 cut(s) 20, 106, 180, 303, 307, 514
Lsp1109I GCAGC 2 cut(s) 25, 62
LweI GCATC 3 cut(s) 14, 304, 398
MaeI CTAG 2 cut(s) 147, 501
MaeII ACGT 2 cut(s) 126, 232
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 137, 330, 432, 453
MboI GATC 4 cut(s) 135, 328, 430, 451
MboII GAAGA 2 cut(s) 130, 530
MflI RGATCY 2 cut(s) 135, 430
MhlI GDGCHC 3 cut(s) 111, 177, 312
MluCI AATT 3 cut(s) 116, 205, 414
MlyI GAGTC 1 cut(s) 525
Mph1103I ATGCAT 1 cut(s) 68
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 3 cut(s) 71, 245, 399
MspR9I CCNGG 5 cut(s) 72, 212, 245, 400, 513
MvaI CCWGG 2 cut(s) 212, 513
MwoI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
NciI CCSGG 3 cut(s) 72, 245, 400
NcoI CCATGG 1 cut(s) 542
NdeII GATC 4 cut(s) 135, 328, 430, 451
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 3 cut(s) 36, 70, 546
NlaIV GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 189
PaeI GCATGC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 548
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 3 cut(s) 40, 77, 319
PleI GAGTC 1 cut(s) 524
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
PpsI GAGTC 1 cut(s) 524
Ppu21I YACGTR 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 2 cut(s) 177, 312
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 210, 511
PspCI CACGTG 1 cut(s) 233
PspGI CCWGG 2 cut(s) 210, 511
PspN4I GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
PspPI GGNCC 2 cut(s) 241, 289
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 2 cut(s) 135, 430
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 177, 312
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 3 cut(s) 39, 76, 318
Sau3AI GATC 4 cut(s) 135, 328, 430, 451
Sau96I GGNCC 2 cut(s) 241, 289
SchI GAGTC 1 cut(s) 525
ScrFI CCNGG 5 cut(s) 72, 212, 245, 400, 513
SduI GDGCHC 3 cut(s) 111, 177, 312
SfaNI GCATC 3 cut(s) 14, 304, 398
SfiI GGCCNNNNNGGCC 1 cut(s) 221
SinI GGWCC 2 cut(s) 241, 289
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SpeI ACTAGT 1 cut(s) 500
SphI GCATGC 1 cut(s) 70
Sse9I AATT 3 cut(s) 116, 205, 414
SsiI CCGC 1 cut(s) 318
SspMI CTAG 2 cut(s) 147, 501
SstI GAGCTC 2 cut(s) 177, 312
StyD4I CCNGG 5 cut(s) 70, 210, 243, 398, 511
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 90, 367
TaiI ACGT 2 cut(s) 129, 235
TaqI TCGA 1 cut(s) 312
TasI AATT 3 cut(s) 116, 205, 414
TauI GCSGC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 38, 75
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 366
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 548
VpaK11BI GGWCC 2 cut(s) 241, 289
XapI RAATTY 2 cut(s) 116, 205
XceI RCATGY 1 cut(s) 70
XspI CTAG 2 cut(s) 147, 501
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.