Rroxscaffold_3G00262610

Protein LATERAL ORGAN

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009917
Physical Location & Seq
Reverse (-)
56629124 .. 56629706
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262610.1

Sequence Viewer

Length: 510 bp
ATGGCTTCTTCATCCAGTTCCTCCTACAACTCACCTTGTGCCGCCTGCAAGTTCTTGAGGCGCAAATGCATGCCCGGCTGCATCTTCGCCCCTTACTTCCCACCGGAGGAGCCCCAAAAGTTCGCCAACGTCCACAAGATCTTCGGCGCCAGCAACGTCACCAAGCTCCTCAATGACCTTCTCCCCCACCAGCGGGAGGACGCCGTCAACTCCCTAGCCTATGAGGCCGAGGCACGCGTCAGGGACCCGGTCTACGGCTGCGTGGGAGCCATTTCCCTTCCTCCAGAGACAGCGACCCCGGGGGTGAATCAGGTAGTTCAACAACAAATTGCTCCTCGGAGCAGGTCTATTGATCATCATCAGTTTTATCAGCAAGCCAGTGCTGCAATTCCTCCTCCTCCAGCTAATTTCCAGGTTCCTTATAATCTTCCATGGAATGTTGATCTTCAAAACCGTACTTCCGGAGATCACATAAATGAAGGAGGAGGATGTGGAGAGGGAAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

169

Amino Acids

18.45

Weight (kDa)

6.94

Isoelectric Point (pI)

63.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 12 - 92 1.4e-37 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63090 AT5G63090 AT5G63090 AT5G63090
fragaria_vesca FvH4_5g05970
malus_domestica MD06G1169000.v1.1 MD14G1174300.v1.1
prunus_persica Prupe.5G167800_v2.0.a1 Prupe.5G167800_v2.0.a1
pyrus_communis pycom06g15060 pycom14g14540
rosa_chinensis RchiOBHm_Chr7g0192861
rosa_laevigata RLG00000004318
rosa_multiflora Rmu_sc0002040.1_g000042
rosa_roxburghii Rroxscaffold_3G00262610
rosa_rugosa Rorug07G0005200
rosa_samantha Rh7AG130900 Rh7BG131700 Rh7CG135000 Rh7DG132800
rosa_wichuraiana Rw7G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 237
AccIII TCCGGA 1 cut(s) 461
AciI CCGC 2 cut(s) 42, 193
AcyI GRCGYC 2 cut(s) 147, 201
AdeI CACNNNGTG 1 cut(s) 38
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 5 cut(s) 106, 192, 193, 196, 254
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 2 cut(s) 320, 449
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 2 cut(s) 166, 404
AluI AGCT 2 cut(s) 166, 404
Alw26I GTCTC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 298
Aor13HI TCCGGA 1 cut(s) 461
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 3 cut(s) 78, 258, 383
AspLEI GCGC 2 cut(s) 63, 149
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 4 cut(s) 75, 248, 299, 300
AsuHPI GGTGA 3 cut(s) 24, 151, 316
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 65, 245, 370
BceAI ACGGC 2 cut(s) 188, 271
BciT130I CCWGG 1 cut(s) 413
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 4 cut(s) 75, 248, 299, 300
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 333
BglI GCCNNNNNGGC 1 cut(s) 224
BglII AGATCT 1 cut(s) 138
BisI GCNGC 4 cut(s) 42, 79, 259, 384
BlsI GCNGC 4 cut(s) 43, 80, 260, 385
Bme1390I CCNGG 5 cut(s) 75, 248, 299, 300, 413
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 6 cut(s) 111, 148, 245, 246, 268, 417
BmrFI CCNGG 5 cut(s) 75, 248, 299, 300, 413
BmsI GCATC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 267, 384
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 4 cut(s) 75, 248, 299, 300
BsaBI GATNNNNATC 1 cut(s) 357
BsaHI GRCGYC 2 cut(s) 147, 201
BsaJI CCNNGG 6 cut(s) 228, 297, 298, 299, 335, 431
BsaWI WCCGGW 2 cut(s) 103, 461
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 192, 193, 196, 254
Bse1I ACTGG 2 cut(s) 15, 378
Bse8I GATNNNNATC 1 cut(s) 357
BseAI TCCGGA 1 cut(s) 461
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 6 cut(s) 228, 297, 298, 299, 335, 431
BseGI GGATG 2 cut(s) 11, 494
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 5 cut(s) 106, 192, 193, 196, 254
BseNI ACTGG 2 cut(s) 15, 378
BseRI GAGGAG 6 cut(s) 122, 158, 324, 384, 387, 498
BseXI GCAGC 3 cut(s) 65, 245, 370
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 5 cut(s) 75, 104, 248, 299, 462
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 5 cut(s) 106, 192, 193, 196, 254
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 461
Bsp143I GATC 4 cut(s) 138, 352, 442, 466
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 2 cut(s) 42, 193
BspANI GGCC 1 cut(s) 227
BspEI TCCGGA 1 cut(s) 461
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 6 cut(s) 111, 148, 245, 246, 268, 417
BspMI ACCTGC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 15, 378
BssECI CCNNGG 6 cut(s) 228, 297, 298, 299, 335, 431
BssMI GATC 4 cut(s) 138, 352, 442, 466
BssNI GRCGYC 2 cut(s) 147, 201
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 455
BstACI GRCGYC 2 cut(s) 147, 201
BstC8I GCNNGC 5 cut(s) 46, 71, 151, 235, 375
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 2 cut(s) 11, 494
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 63, 149
BstKTI GATC 4 cut(s) 141, 355, 445, 469
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 4 cut(s) 138, 352, 442, 466
BstMWI GCNNNNNNNGC 3 cut(s) 75, 224, 383
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 5 cut(s) 73, 246, 297, 298, 411
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 65, 245, 370
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 431
BtsCI GGATG 2 cut(s) 11, 494
BtsIMutI CAGTG 1 cut(s) 385
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 5 cut(s) 46, 71, 151, 235, 375
CfoI GCGC 2 cut(s) 63, 149
Cfr13I GGNCC 1 cut(s) 244
Cfr9I CCCGGG 1 cut(s) 298
CseI GACGC 2 cut(s) 209, 226
Csp6I GTAC 1 cut(s) 456
CviAII CATG 2 cut(s) 70, 432
CviQI GTAC 1 cut(s) 456
DinI GGCGCC 1 cut(s) 148
DpnI GATC 4 cut(s) 140, 354, 444, 468
DpnII GATC 4 cut(s) 138, 352, 442, 466
DraIII CACNNNGTG 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 114
EgeI GGCGCC 1 cut(s) 148
EheI GGCGCC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 2 cut(s) 73, 435
FaiI YATR 5 cut(s) 71, 222, 423, 433, 473
FaqI GGGAC 1 cut(s) 257
FatI CATG 2 cut(s) 69, 431
FauI CCCGC 1 cut(s) 186
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 4 cut(s) 42, 79, 259, 384
FokI GGATG 1 cut(s) 501
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 4 cut(s) 42, 79, 259, 384
FspBI CTAG 1 cut(s) 215
GlaI GCGC 2 cut(s) 62, 148
GluI GCNGC 4 cut(s) 42, 79, 259, 384
GsuI CTGGAG 2 cut(s) 267, 384
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 1 cut(s) 227
HapII CCGG 5 cut(s) 75, 104, 248, 299, 462
HgaI GACGC 2 cut(s) 209, 226
HhaI GCGC 2 cut(s) 63, 149
Hin1I GRCGYC 2 cut(s) 147, 201
Hin1II CATG 2 cut(s) 73, 435
Hin6I GCGC 2 cut(s) 61, 147
HinP1I GCGC 2 cut(s) 61, 147
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 1 cut(s) 307
HpaII CCGG 5 cut(s) 75, 104, 248, 299, 462
HphI GGTGA 3 cut(s) 24, 151, 316
Hpy166II GTNNAC 3 cut(s) 133, 208, 253
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 3 cut(s) 55, 284, 462
Hpy8I GTNNAC 3 cut(s) 133, 208, 253
HpyAV CCTTC 3 cut(s) 188, 287, 473
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 2 cut(s) 129, 156
HpyCH4V TGCA 4 cut(s) 48, 69, 81, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 224, 383
HpySE526I ACGT 2 cut(s) 129, 156
Hsp92I GRCGYC 2 cut(s) 147, 201
Hsp92II CATG 2 cut(s) 73, 435
HspAI GCGC 2 cut(s) 61, 147
KasI GGCGCC 1 cut(s) 146
KflI GGGWCCC 1 cut(s) 244
Kpn2I TCCGGA 1 cut(s) 461
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 4 cut(s) 138, 352, 442, 466
LmnI GCTCC 5 cut(s) 109, 171, 266, 337, 339
Lsp1109I GCAGC 3 cut(s) 65, 245, 370
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 215
MaeII ACGT 2 cut(s) 129, 156
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 140, 354, 444, 468
MboI GATC 4 cut(s) 138, 352, 442, 466
MboII GAAGA 4 cut(s) 76, 133, 419, 437
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 327, 387, 406
MluI ACGCGT 1 cut(s) 235
Mly113I GGCGCC 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 71
MroI TCCGGA 1 cut(s) 461
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 5 cut(s) 75, 104, 248, 299, 462
MspR9I CCNGG 5 cut(s) 75, 248, 299, 300, 413
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 75, 224, 383
NarI GGCGCC 1 cut(s) 147
NciI CCSGG 4 cut(s) 75, 248, 299, 300
NcoI CCATGG 1 cut(s) 431
NdeII GATC 4 cut(s) 138, 352, 442, 466
NlaIII CATG 2 cut(s) 73, 435
NlaIV GGNNCC 6 cut(s) 111, 148, 245, 246, 268, 417
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 71
NspI RCATGY 1 cut(s) 73
PaeI GCATGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 307
PflFI GACNNNGTC 2 cut(s) 203, 248
PkrI GCNGC 4 cut(s) 43, 80, 260, 385
PluTI GGCGCC 1 cut(s) 150
PpuMI RGGWCCY 1 cut(s) 244
PsiI TTATAA 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 6 cut(s) 111, 148, 245, 246, 268, 417
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 138
PsyI GACNNNGTC 2 cut(s) 203, 248
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
RseI CAYNNNNRTG 1 cut(s) 474
SatI GCNGC 4 cut(s) 42, 79, 259, 384
Sau3AI GATC 4 cut(s) 138, 352, 442, 466
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 5 cut(s) 75, 248, 299, 300, 413
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 37, 132, 159, 168, 180, 315, 347, 406, 417
SfaNI GCATC 1 cut(s) 90
SfoI GGCGCC 1 cut(s) 148
SinI GGWCC 1 cut(s) 244
SmaI CCCGGG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SphI GCATGC 1 cut(s) 73
Sse9I AATT 3 cut(s) 327, 387, 406
SsiI CCGC 2 cut(s) 42, 193
SspDI GGCGCC 1 cut(s) 146
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 5 cut(s) 73, 246, 297, 298, 411
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 2 cut(s) 132, 159
TasI AATT 3 cut(s) 327, 387, 406
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 307
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 78, 258, 383
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 492
TspMI CCCGGG 1 cut(s) 298
TspRI CASTG 1 cut(s) 385
Tth111I GACNNNGTC 2 cut(s) 203, 248
VpaK11BI GGWCC 1 cut(s) 244
XceI RCATGY 1 cut(s) 73
XmaI CCCGGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.