MD06G1169000.v1.1

Protein LATERAL ORGAN

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009917
Physical Location & Seq
Forward (+)
30952015 .. 30954415
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1169000.v1.1.491

Sequence Viewer

Length: 600 bp
ATGGCATCCTCCAGCTCCTCCTATAACTCTCCATGCGCTGCCTGCAAGTTCTTGAGAAGGAAATGCATGCCCGGCTGCATTTTCGCACCGTATTTCCCACCAGAGGAGCCCCAAAAGTTTGCAAACGTCCACAAGATCTTCGGGGCAAGCAATGTCACCAAACTTCTAAACGAGCTCCTGCCTCACCAGCGTGAGGATGCCGTGAACTCCCTGGCGTATGAGGCCGAGGCACGTGTCAGGGACCCGGTCTATGGCTGTGTTGGTGCCATTTCTTTCCTCCAACGACAGGTCCAGAGGCTCCAGAAGGAGCTCGATGCCGCTAATGCTGATCTCATCCGCTATGCCTGCACTGAACTCACAACAACTGTGTTGCCTCCTCCTACTGCATCAATGGCCGGGATAAATTCGGTAATTCAGCCGAACATGGCTCCTCAGAGAAGGTTGGTTGATCATCCTTCTCATCATCATCAGTATTACCAACAAACCAGTACAACTACAACTAGTAATGCTCCTGGAGTCGCTTTCCCAGTACCTTATCTTCCGTGGAATGGAGGAGGAGCAGGTAGTGGTGGTGGTGGAGGAGGAGAGGGCAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

200

Amino Acids

21.49

Weight (kDa)

8.55

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 11 - 108 4.3e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63090 AT5G63090 AT5G63090 AT5G63090
fragaria_vesca FvH4_5g05970
malus_domestica MD06G1169000.v1.1 MD14G1174300.v1.1
prunus_persica Prupe.5G167800_v2.0.a1 Prupe.5G167800_v2.0.a1
pyrus_communis pycom06g15060 pycom14g14540
rosa_chinensis RchiOBHm_Chr7g0192861
rosa_laevigata RLG00000004318
rosa_multiflora Rmu_sc0002040.1_g000042
rosa_roxburghii Rroxscaffold_3G00262610
rosa_rugosa Rorug07G0005200
rosa_samantha Rh7AG130900 Rh7BG131700 Rh7CG135000 Rh7DG132800
rosa_wichuraiana Rw7G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 2 cut(s) 318, 337
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 403
AcvI CACGTG 1 cut(s) 233
AfaI GTAC 2 cut(s) 490, 531
AfiI CCNNNNNNNGG 5 cut(s) 103, 193, 251, 286, 548
AflIII ACRYGT 1 cut(s) 232
AhlI ACTAGT 1 cut(s) 500
AjnI CCWGG 2 cut(s) 210, 511
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 3 cut(s) 15, 175, 310
AluI AGCT 3 cut(s) 15, 175, 310
Alw21I GWGCWC 2 cut(s) 177, 312
AoxI GGCC 2 cut(s) 222, 393
ApeKI GCWGC 2 cut(s) 38, 75
ApoI RAATTY 1 cut(s) 403
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 241, 289
AsuC2I CCSGG 3 cut(s) 72, 245, 397
AsuHPI GGTGA 2 cut(s) 148, 176
AvaII GGWCC 2 cut(s) 241, 289
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 3 cut(s) 111, 177, 312
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BbrPI CACGTG 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 177, 312
BbvI GCAGC 2 cut(s) 25, 62
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 212, 513
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 3 cut(s) 72, 245, 397
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 551
BglII AGATCT 1 cut(s) 135
BisI GCNGC 3 cut(s) 39, 76, 318
BlsI GCNGC 3 cut(s) 40, 77, 319
Bme1390I CCNGG 5 cut(s) 72, 212, 245, 397, 513
Bme18I GGWCC 2 cut(s) 241, 289
BmgT120I GGNCC 2 cut(s) 241, 289
BmiI GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 429
BmrFI CCNGG 5 cut(s) 72, 212, 245, 397, 513
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 4 cut(s) 14, 187, 304, 395
BmuI ACTGGG 1 cut(s) 521
BpmI CTGGAG 2 cut(s) 284, 534
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 3 cut(s) 72, 245, 397
BsaAI YACGTR 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 210, 225, 542
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 193, 251, 286, 548
Bse1I ACTGG 2 cut(s) 486, 527
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 212, 513
BseDI CCNNGG 3 cut(s) 210, 225, 542
BseGI GGATG 4 cut(s) 5, 202, 333, 451
BseLI CCNNNNNNNGG 5 cut(s) 103, 193, 251, 286, 548
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 486, 527
BseRI GAGGAG 8 cut(s) 7, 119, 366, 420, 567, 570, 594, 597
BseXI GCAGC 2 cut(s) 25, 62
BsgI GTGCAG 1 cut(s) 331
BshFI GGCC 2 cut(s) 224, 395
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 177, 312
BsiSI CCGG 3 cut(s) 72, 245, 396
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 5 cut(s) 103, 193, 251, 286, 548
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 2 cut(s) 224, 395
Bsp1286I GDGCHC 3 cut(s) 111, 177, 312
Bsp143I GATC 3 cut(s) 135, 328, 448
BspACI CCGC 2 cut(s) 318, 337
BspANI GGCC 2 cut(s) 224, 395
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 429
BspMI ACCTGC 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 2 cut(s) 486, 527
BssECI CCNNGG 3 cut(s) 210, 225, 542
BssMI GATC 3 cut(s) 135, 328, 448
Bst2UI CCWGG 2 cut(s) 212, 513
Bst4CI ACNGT 2 cut(s) 90, 367
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 4 cut(s) 43, 68, 148, 346
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 542
BstF5I GGATG 4 cut(s) 5, 202, 333, 451
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 3 cut(s) 138, 331, 451
BstMBI GATC 3 cut(s) 135, 328, 448
BstMWI GCNNNNNNNGC 7 cut(s) 42, 72, 187, 221, 323, 345, 392
BstNI CCWGG 2 cut(s) 212, 513
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 5 cut(s) 70, 210, 243, 395, 511
BstV1I GCAGC 2 cut(s) 25, 62
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 2 cut(s) 224, 395
BtgI CCRYGG 1 cut(s) 542
BtsCI GGATG 4 cut(s) 5, 202, 333, 451
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 4 cut(s) 43, 68, 148, 346
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 241, 289
Csp6I GTAC 2 cut(s) 489, 530
CviAII CATG 3 cut(s) 33, 67, 424
CviQI GTAC 2 cut(s) 489, 530
DdeI CTNAG 1 cut(s) 432
DpnI GATC 3 cut(s) 137, 330, 450
DpnII GATC 3 cut(s) 135, 328, 448
EaeI YGGCCR 1 cut(s) 393
Ecl136II GAGCTC 2 cut(s) 175, 310
Eco24I GRGCYC 3 cut(s) 111, 177, 312
Eco47I GGWCC 2 cut(s) 241, 289
Eco53kI GAGCTC 2 cut(s) 175, 310
Eco72I CACGTG 1 cut(s) 233
EcoICRI GAGCTC 2 cut(s) 175, 310
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 210, 511
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 3 cut(s) 111, 177, 312
FaeI CATG 3 cut(s) 36, 70, 427
FaiI YATR 7 cut(s) 24, 34, 68, 219, 252, 342, 425
FaqI GGGAC 1 cut(s) 254
FatI CATG 3 cut(s) 32, 66, 423
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 39, 76, 318
FokI GGATG 3 cut(s) 209, 320, 438
FriOI GRGCYC 3 cut(s) 111, 177, 312
Fsp4HI GCNGC 3 cut(s) 39, 76, 318
FspBI CTAG 1 cut(s) 501
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 76, 318
GsuI CTGGAG 2 cut(s) 284, 534
HaeIII GGCC 2 cut(s) 224, 395
HapII CCGG 3 cut(s) 72, 245, 396
HhaI GCGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 36, 70, 427
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 1 cut(s) 516
HpaII CCGG 3 cut(s) 72, 245, 396
HphI GGTGA 2 cut(s) 148, 176
Hpy166II GTNNAC 2 cut(s) 130, 205
Hpy188I TCNGA 1 cut(s) 435
Hpy188III TCNNGA 3 cut(s) 52, 292, 301
Hpy8I GTNNAC 2 cut(s) 130, 205
HpyAV CCTTC 4 cut(s) 51, 298, 432, 465
HpyCH4III ACNGT 2 cut(s) 90, 367
HpyCH4IV ACGT 2 cut(s) 126, 232
HpyCH4V TGCA 6 cut(s) 45, 66, 78, 122, 348, 386
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 72, 187, 221, 323, 345, 392
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 2 cut(s) 126, 232
Hsp92II CATG 3 cut(s) 36, 70, 427
HspAI GCGC 1 cut(s) 36
KflI GGGWCCC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 3 cut(s) 135, 328, 448
LmnI GCTCC 8 cut(s) 20, 106, 180, 303, 307, 433, 514, 557
Lsp1109I GCAGC 2 cut(s) 25, 62
LweI GCATC 4 cut(s) 14, 187, 304, 395
MaeI CTAG 1 cut(s) 501
MaeII ACGT 2 cut(s) 126, 232
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 137, 330, 450
MboI GATC 3 cut(s) 135, 328, 448
MboII GAAGA 2 cut(s) 130, 530
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 3 cut(s) 111, 177, 312
MluCI AATT 2 cut(s) 403, 411
MlyI GAGTC 1 cut(s) 525
MmeI TCCRAC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 3 cut(s) 72, 245, 396
MspR9I CCNGG 5 cut(s) 72, 212, 245, 397, 513
MvaI CCWGG 2 cut(s) 212, 513
MwoI GCNNNNNNNGC 7 cut(s) 42, 72, 187, 221, 323, 345, 392
NciI CCSGG 3 cut(s) 72, 245, 397
NdeII GATC 3 cut(s) 135, 328, 448
NlaIII CATG 3 cut(s) 36, 70, 427
NlaIV GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 429
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 189
PaeI GCATGC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 3 cut(s) 40, 77, 319
PleI GAGTC 1 cut(s) 524
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
PpsI GAGTC 1 cut(s) 524
Ppu21I YACGTR 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 2 cut(s) 177, 312
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 210, 511
PspCI CACGTG 1 cut(s) 233
PspGI CCWGG 2 cut(s) 210, 511
PspN4I GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 429
PspPI GGNCC 2 cut(s) 241, 289
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 2 cut(s) 490, 531
RsaNI GTAC 2 cut(s) 489, 530
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 177, 312
SatI GCNGC 3 cut(s) 39, 76, 318
Sau3AI GATC 3 cut(s) 135, 328, 448
Sau96I GGNCC 2 cut(s) 241, 289
SchI GAGTC 1 cut(s) 525
ScrFI CCNGG 5 cut(s) 72, 212, 245, 397, 513
SduI GDGCHC 3 cut(s) 111, 177, 312
SetI ASST 9 cut(s) 17, 129, 177, 235, 291, 312, 443, 535, 565
SfaNI GCATC 4 cut(s) 14, 187, 304, 395
SinI GGWCC 2 cut(s) 241, 289
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SpeI ACTAGT 1 cut(s) 500
SphI GCATGC 1 cut(s) 70
Sse9I AATT 2 cut(s) 403, 411
SsiI CCGC 2 cut(s) 318, 337
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 2 cut(s) 177, 312
StyD4I CCNGG 5 cut(s) 70, 210, 243, 395, 511
TaaI ACNGT 2 cut(s) 90, 367
TaiI ACGT 2 cut(s) 129, 235
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 403, 411
TatI WGTACW 1 cut(s) 488
TauI GCSGC 1 cut(s) 320
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 38, 75
Tsp45I GTSAC 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 1 cut(s) 355
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 241, 289
XapI RAATTY 1 cut(s) 403
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 501
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.