MD14G1174300.v1.1

Protein LATERAL ORGAN

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0009917
Physical Location & Seq
Forward (+)
26815867 .. 26818167
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1174300.v1.1.491

Sequence Viewer

Length: 612 bp
ATGGCATCCTCCAGCTCCTCCTATAACTCTCCATGCGCTGCCTGCAAGTTCTTGAGAAGGAAATGCATGCCGGGCTGCATTTTTGCACCGTATTTCCCACCAGAGGAGCCCCAAAAATTTGCAAACGTCCACAAGATCTTCGGGGCTAGCAATGTCACCAAACTTCTTAACGAGCTCCTGCCTCACCAGCGTGAGGACGCCGTGAACTCCCTGGCCTATGAGGCCGAGGCACGTGTCAGGGACCCGGTCTATGGCTGTGTTGGTGCCATTTCTTTCCTCCAAAGACAGGTCCAGAGGCTCCAGAAGGAGCTCGATGCAGCTAATGCTGATCTTATTCACTATGCCTGCAATGAACTCACAACAACTGTGTTGCCTCCTCCTACTACTGCATCAATGGCCGGGACATATTCGGTAATTCAGCCGAATATGGATCCTCAGAGAAGGTTGGTGGTTGATCAACCTCATCATCACCATCAGTACTACCAACAAACTAGTACTACCACAACTAGTAATGCTCCTGGAGTCAGTTTCCCAGTACCTTATCTTCCATGGAATGGAGGAGGAGGAGGAGGAGGAGGTAGTGGTGATGGAGGAGGAGAGGACAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

204

Amino Acids

22.04

Weight (kDa)

6.64

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 11 - 108 4.6e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63090 AT5G63090 AT5G63090 AT5G63090
fragaria_vesca FvH4_5g05970
malus_domestica MD06G1169000.v1.1 MD14G1174300.v1.1
prunus_persica Prupe.5G167800_v2.0.a1 Prupe.5G167800_v2.0.a1
pyrus_communis pycom06g15060 pycom14g14540
rosa_chinensis RchiOBHm_Chr7g0192861
rosa_laevigata RLG00000004318
rosa_multiflora Rmu_sc0002040.1_g000042
rosa_roxburghii Rroxscaffold_3G00262610
rosa_rugosa Rorug07G0005200
rosa_samantha Rh7AG130900 Rh7BG131700 Rh7CG135000 Rh7DG132800
rosa_wichuraiana Rw7G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 554
AclWI GGATC 2 cut(s) 425, 438
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 1 cut(s) 116
AcvI CACGTG 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 3 cut(s) 479, 496, 537
AfiI CCNNNNNNNGG 5 cut(s) 103, 193, 251, 286, 554
AflIII ACRYGT 1 cut(s) 232
AhlI ACTAGT 2 cut(s) 491, 506
AjnI CCWGG 2 cut(s) 210, 517
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 4 cut(s) 15, 175, 310, 320
AluI AGCT 4 cut(s) 15, 175, 310, 320
Alw21I GWGCWC 2 cut(s) 177, 312
AlwI GGATC 2 cut(s) 425, 438
AoxI GGCC 3 cut(s) 213, 222, 396
ApeKI GCWGC 3 cut(s) 38, 75, 317
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 241, 289
AsuC2I CCSGG 3 cut(s) 72, 245, 400
AsuHPI GGTGA 4 cut(s) 148, 176, 461, 596
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 2 cut(s) 241, 289
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 3 cut(s) 111, 177, 312
BarI GAAGNNNNNNTAC 2 cut(s) 528, 560
BbrPI CACGTG 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 177, 312
BbvI GCAGC 3 cut(s) 25, 62, 329
BccI CCATC 2 cut(s) 480, 581
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 212, 519
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 3 cut(s) 72, 245, 400
BcuI ACTAGT 2 cut(s) 491, 506
BfaI CTAG 3 cut(s) 147, 492, 507
BglI GCCNNNNNGGC 1 cut(s) 221
BglII AGATCT 1 cut(s) 135
BisI GCNGC 3 cut(s) 39, 76, 318
BlsI GCNGC 3 cut(s) 40, 77, 319
BmcAI AGTACT 2 cut(s) 479, 496
Bme1390I CCNGG 5 cut(s) 72, 212, 245, 400, 519
Bme18I GGWCC 2 cut(s) 241, 289
BmgT120I GGNCC 2 cut(s) 241, 289
BmiI GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
BmrFI CCNGG 5 cut(s) 72, 212, 245, 400, 519
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 3 cut(s) 14, 304, 398
BmtI GCTAGC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 527
BpmI CTGGAG 2 cut(s) 284, 540
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 3 cut(s) 72, 245, 400
BsaAI YACGTR 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 210, 225, 548
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 193, 251, 286, 554
Bse1I ACTGG 1 cut(s) 533
Bse3DI GCAATG 2 cut(s) 157, 355
BseBI CCWGG 2 cut(s) 212, 519
BseDI CCNNGG 3 cut(s) 210, 225, 548
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 5 cut(s) 103, 193, 251, 286, 554
BseMI GCAATG 2 cut(s) 157, 355
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 533
BseXI GCAGC 3 cut(s) 25, 62, 329
BshFI GGCC 3 cut(s) 215, 224, 398
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 177, 312
BsiSI CCGG 3 cut(s) 71, 245, 399
BslFI GGGAC 2 cut(s) 254, 415
BslI CCNNNNNNNGG 5 cut(s) 103, 193, 251, 286, 554
BsmFI GGGAC 2 cut(s) 254, 415
BsnI GGCC 3 cut(s) 215, 224, 398
Bsp1286I GDGCHC 3 cut(s) 111, 177, 312
Bsp143I GATC 4 cut(s) 135, 328, 430, 454
Bsp19I CCATGG 1 cut(s) 548
BspANI GGCC 3 cut(s) 215, 224, 398
BspCNI CTCAG 1 cut(s) 448
BspLI GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 2 cut(s) 425, 438
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 157, 355
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 3 cut(s) 210, 225, 548
BssMI GATC 4 cut(s) 135, 328, 430, 454
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 548
Bst2UI CCWGG 2 cut(s) 212, 519
Bst4CI ACNGT 2 cut(s) 90, 367
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 323
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 4 cut(s) 43, 68, 148, 346
BstDEI CTNAG 1 cut(s) 435
BstDSI CCRYGG 1 cut(s) 548
BstF5I GGATG 1 cut(s) 5
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 4 cut(s) 138, 331, 433, 457
BstMBI GATC 4 cut(s) 135, 328, 430, 454
BstMWI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
BstNI CCWGG 2 cut(s) 212, 519
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 5 cut(s) 70, 210, 243, 398, 517
BstV1I GCAGC 3 cut(s) 25, 62, 329
BstX2I RGATCY 2 cut(s) 135, 430
BstYI RGATCY 2 cut(s) 135, 430
BsuRI GGCC 3 cut(s) 215, 224, 398
BtgI CCRYGG 1 cut(s) 548
BtsCI GGATG 1 cut(s) 5
Cac8I GCNNGC 4 cut(s) 43, 68, 148, 346
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 241, 289
CseI GACGC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 478, 495, 536
CviAII CATG 3 cut(s) 33, 67, 549
CviQI GTAC 3 cut(s) 478, 495, 536
DdeI CTNAG 1 cut(s) 435
DpnI GATC 4 cut(s) 137, 330, 432, 456
DpnII GATC 4 cut(s) 135, 328, 430, 454
EaeI YGGCCR 1 cut(s) 396
Ecl136II GAGCTC 2 cut(s) 175, 310
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 3 cut(s) 111, 177, 312
Eco47I GGWCC 2 cut(s) 241, 289
Eco53kI GAGCTC 2 cut(s) 175, 310
Eco72I CACGTG 1 cut(s) 233
EcoICRI GAGCTC 2 cut(s) 175, 310
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 210, 517
EcoT14I CCWWGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 3 cut(s) 111, 177, 312
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 3 cut(s) 36, 70, 552
FaiI YATR 9 cut(s) 24, 34, 68, 219, 252, 342, 406, 428, 550
FaqI GGGAC 2 cut(s) 254, 415
FatI CATG 3 cut(s) 32, 66, 548
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 3 cut(s) 39, 76, 318
FriOI GRGCYC 3 cut(s) 111, 177, 312
Fsp4HI GCNGC 3 cut(s) 39, 76, 318
FspBI CTAG 3 cut(s) 147, 492, 507
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 76, 318
GsuI CTGGAG 2 cut(s) 284, 540
HaeIII GGCC 3 cut(s) 215, 224, 398
HapII CCGG 3 cut(s) 71, 245, 399
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 36, 70, 552
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 1 cut(s) 522
HpaII CCGG 3 cut(s) 71, 245, 399
HphI GGTGA 4 cut(s) 148, 176, 461, 596
Hpy166II GTNNAC 2 cut(s) 130, 205
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 3 cut(s) 52, 292, 301
Hpy8I GTNNAC 2 cut(s) 130, 205
HpyAV CCTTC 3 cut(s) 51, 298, 435
HpyCH4III ACNGT 2 cut(s) 90, 367
HpyCH4IV ACGT 2 cut(s) 126, 232
HpyCH4V TGCA 8 cut(s) 45, 66, 78, 86, 122, 317, 348, 389
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 2 cut(s) 126, 232
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 36, 70, 552
HspAI GCGC 1 cut(s) 36
KflI GGGWCCC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 135, 328, 430, 454
LmnI GCTCC 6 cut(s) 20, 106, 180, 303, 307, 520
Lsp1109I GCAGC 3 cut(s) 25, 62, 329
LweI GCATC 3 cut(s) 14, 304, 398
MaeI CTAG 3 cut(s) 147, 492, 507
MaeII ACGT 2 cut(s) 126, 232
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 137, 330, 432, 456
MboI GATC 4 cut(s) 135, 328, 430, 454
MboII GAAGA 2 cut(s) 130, 536
MflI RGATCY 2 cut(s) 135, 430
MhlI GDGCHC 3 cut(s) 111, 177, 312
MluCI AATT 2 cut(s) 116, 414
MlyI GAGTC 1 cut(s) 531
Mph1103I ATGCAT 1 cut(s) 68
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 3 cut(s) 71, 245, 399
MspR9I CCNGG 5 cut(s) 72, 212, 245, 400, 519
MvaI CCWGG 2 cut(s) 212, 519
MwoI GCNNNNNNNGC 6 cut(s) 42, 72, 187, 221, 323, 395
NciI CCSGG 3 cut(s) 72, 245, 400
NcoI CCATGG 1 cut(s) 548
NdeII GATC 4 cut(s) 135, 328, 430, 454
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 3 cut(s) 36, 70, 552
NlaIV GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 189
PaeI GCATGC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 554
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 3 cut(s) 40, 77, 319
PleI GAGTC 1 cut(s) 530
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
PpsI GAGTC 1 cut(s) 530
Ppu21I YACGTR 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 2 cut(s) 177, 312
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 210, 517
PspCI CACGTG 1 cut(s) 233
PspGI CCWGG 2 cut(s) 210, 517
PspN4I GGNNCC 6 cut(s) 108, 242, 243, 265, 299, 432
PspPI GGNCC 2 cut(s) 241, 289
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 2 cut(s) 135, 430
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 3 cut(s) 479, 496, 537
RsaNI GTAC 3 cut(s) 478, 495, 536
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 177, 312
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 3 cut(s) 39, 76, 318
Sau3AI GATC 4 cut(s) 135, 328, 430, 454
Sau96I GGNCC 2 cut(s) 241, 289
ScaI AGTACT 2 cut(s) 479, 496
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 5 cut(s) 72, 212, 245, 400, 519
SduI GDGCHC 3 cut(s) 111, 177, 312
SfaNI GCATC 3 cut(s) 14, 304, 398
SfiI GGCCNNNNNGGCC 1 cut(s) 221
SinI GGWCC 2 cut(s) 241, 289
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SpeI ACTAGT 2 cut(s) 491, 506
SphI GCATGC 1 cut(s) 70
Sse9I AATT 2 cut(s) 116, 414
SspMI CTAG 3 cut(s) 147, 492, 507
SstI GAGCTC 2 cut(s) 177, 312
StyD4I CCNGG 5 cut(s) 70, 210, 243, 398, 517
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 2 cut(s) 90, 367
TaiI ACGT 2 cut(s) 129, 235
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 116, 414
TatI WGTACW 2 cut(s) 477, 494
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 3 cut(s) 38, 75, 317
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 366
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 241, 289
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 70
XspI CTAG 3 cut(s) 147, 492, 507
ZrmI AGTACT 2 cut(s) 479, 496
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.